| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is ygcW [C]
Identifier: 238025384
GI number: 238025384
Start: 2558785
End: 2559573
Strand: Direct
Name: ygcW [C]
Synonym: bglu_2g20660
Alternate gene names: 238025384
Gene position: 2558785-2559573 (Clockwise)
Preceding gene: 238025383
Following gene: 238025385
Centisome position: 90.5
GC content: 66.54
Gene sequence:
>789_bases ATGATCGATCTGAATGACAAGGTGGCGATCGTCACCGGCGGCGCGACCCTGATCGGCGCGGCCGTGGCACGTGATCTCGT CGCCGCGGGCGCCCGCGTGGCGATTTTCGACATCGATCGCGACAACGGAGCGCGCGTCGCGGAATCGATCGGCGAACACG CGGTTTTCATGGCCGTCGACATCACCGACGACCACGCGATTCAACACGCCGTTGCCGGGGTCGCGGACCGCTTCGGCAGC GTGGACATCCTCGTCAACCTGGCGTGCAGCTATGTCGACAACGGCATGCAGGCGAGCCGCAACGACTGGCTGGGCGCGAT GGACGTGAACGTGGTCTCCGCCGTCATGCTGAGCCTGGCCGCGCACCCCTACATGGTGAAGCGCGGCGGCGGCGCCGTGG TGAATTTCAGCTCGATTTCCGCCAGTTGCGCCCAGACCGGGCGCTGGCTCTATCCGACCTCCAAAGCCGCGATCCGGCAG CTCACGCGCAGCATGGCAATGGATTTCGCGCGGGACCACATCCGCGTCAACTCGGTGTCGCCGGGCTGGACCTGGTCCCG GCTGATGGACGATCTCACCCATGGCGACCGTGCCAAGACCGACCGCGTGGCGGCGCCCTATCATTTGCTCGGCCGAGTGG GCGATCCCGAGGAAGTCGCACGCGTGGTCACCTTCCTCTGCAGCGATGCGGCGAGTTTCGTGACTGGCGCGGACTATGCC GTGGATGGCGGCTACTCCGCCATGGGCCCCGAGCAGGCTCAGCCCGCGATTCCCCGGCTCACCGAATAA
Upstream 100 bases:
>100_bases GCTCCTCGACGAGACCGTGCCCTCGAACCGGCTGATGCCGAACTGGCGGCGCGAGGCCGCCGCTCACGACACCCCCTGAT CCGCTTCAAGGAGAACACTG
Downstream 100 bases:
>100_bases CGGACGAGGCTCACGCGCCCCATTCACTCTTTCCATCAATAAGGAATCCAAATGAGACGAATCGCCATTGTCGGTGCTGG CCAGTCCGGCCTGCAGCTTG
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 262; Mature: 262
Protein sequence:
>262_residues MIDLNDKVAIVTGGATLIGAAVARDLVAAGARVAIFDIDRDNGARVAESIGEHAVFMAVDITDDHAIQHAVAGVADRFGS VDILVNLACSYVDNGMQASRNDWLGAMDVNVVSAVMLSLAAHPYMVKRGGGAVVNFSSISASCAQTGRWLYPTSKAAIRQ LTRSMAMDFARDHIRVNSVSPGWTWSRLMDDLTHGDRAKTDRVAAPYHLLGRVGDPEEVARVVTFLCSDAASFVTGADYA VDGGYSAMGPEQAQPAIPRLTE
Sequences:
>Translated_262_residues MIDLNDKVAIVTGGATLIGAAVARDLVAAGARVAIFDIDRDNGARVAESIGEHAVFMAVDITDDHAIQHAVAGVADRFGS VDILVNLACSYVDNGMQASRNDWLGAMDVNVVSAVMLSLAAHPYMVKRGGGAVVNFSSISASCAQTGRWLYPTSKAAIRQ LTRSMAMDFARDHIRVNSVSPGWTWSRLMDDLTHGDRAKTDRVAAPYHLLGRVGDPEEVARVVTFLCSDAASFVTGADYA VDGGYSAMGPEQAQPAIPRLTE >Mature_262_residues MIDLNDKVAIVTGGATLIGAAVARDLVAAGARVAIFDIDRDNGARVAESIGEHAVFMAVDITDDHAIQHAVAGVADRFGS VDILVNLACSYVDNGMQASRNDWLGAMDVNVVSAVMLSLAAHPYMVKRGGGAVVNFSSISASCAQTGRWLYPTSKAAIRQ LTRSMAMDFARDHIRVNSVSPGWTWSRLMDDLTHGDRAKTDRVAAPYHLLGRVGDPEEVARVVTFLCSDAASFVTGADYA VDGGYSAMGPEQAQPAIPRLTE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=253, Percent_Identity=33.201581027668, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI59889578, Length=225, Percent_Identity=32, Blast_Score=105, Evalue=3e-23, Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=29.7520661157025, Blast_Score=105, Evalue=5e-23, Organism=Homo sapiens, GI5031737, Length=253, Percent_Identity=34.3873517786561, Blast_Score=104, Evalue=8e-23, Organism=Homo sapiens, GI19923817, Length=262, Percent_Identity=28.2442748091603, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI15277342, Length=257, Percent_Identity=29.9610894941634, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI4758504, Length=249, Percent_Identity=29.3172690763052, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI126723750, Length=255, Percent_Identity=29.8039215686275, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI66933014, Length=250, Percent_Identity=30, Blast_Score=91, Evalue=7e-19, Organism=Homo sapiens, GI31542939, Length=199, Percent_Identity=29.6482412060301, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI10190704, Length=248, Percent_Identity=29.4354838709677, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI7705925, Length=247, Percent_Identity=31.1740890688259, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI83715985, Length=249, Percent_Identity=27.710843373494, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI224922801, Length=173, Percent_Identity=31.7919075144509, Blast_Score=78, Evalue=6e-15, Organism=Homo sapiens, GI33667109, Length=189, Percent_Identity=34.3915343915344, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI20149619, Length=195, Percent_Identity=30.2564102564103, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI4503301, Length=259, Percent_Identity=26.2548262548263, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=31.1475409836066, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI109715829, Length=250, Percent_Identity=26.4, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI87082160, Length=253, Percent_Identity=32.8063241106719, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=31.7073170731707, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1787905, Length=244, Percent_Identity=33.1967213114754, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1790717, Length=252, Percent_Identity=30.952380952381, Blast_Score=104, Evalue=6e-24, Organism=Escherichia coli, GI87082100, Length=260, Percent_Identity=28.4615384615385, Blast_Score=101, Evalue=4e-23, Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=29.718875502008, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1786812, Length=255, Percent_Identity=32.156862745098, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1788459, Length=253, Percent_Identity=29.6442687747036, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1789378, Length=248, Percent_Identity=29.0322580645161, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=30.6772908366534, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI2367365, Length=253, Percent_Identity=29.6442687747036, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1789057, Length=258, Percent_Identity=27.906976744186, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1787820, Length=178, Percent_Identity=25.8426966292135, Blast_Score=73, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17560332, Length=268, Percent_Identity=33.2089552238806, Blast_Score=114, Evalue=6e-26, Organism=Caenorhabditis elegans, GI71994600, Length=263, Percent_Identity=32.6996197718631, Blast_Score=110, Evalue=7e-25, Organism=Caenorhabditis elegans, GI71994604, Length=262, Percent_Identity=33.587786259542, Blast_Score=110, Evalue=8e-25, Organism=Caenorhabditis elegans, GI17560676, Length=251, Percent_Identity=32.2709163346614, Blast_Score=108, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=31.2252964426877, Blast_Score=107, Evalue=8e-24, Organism=Caenorhabditis elegans, GI25147288, Length=256, Percent_Identity=30.078125, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17555706, Length=245, Percent_Identity=30.6122448979592, Blast_Score=100, Evalue=6e-22, Organism=Caenorhabditis elegans, GI17538182, Length=252, Percent_Identity=30.1587301587302, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17562906, Length=265, Percent_Identity=30.5660377358491, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17562910, Length=262, Percent_Identity=29.0076335877863, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI193204405, Length=274, Percent_Identity=29.1970802919708, Blast_Score=94, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=30.3030303030303, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=28.6259541984733, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17536025, Length=255, Percent_Identity=32.156862745098, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17531453, Length=272, Percent_Identity=29.0441176470588, Blast_Score=88, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17562904, Length=275, Percent_Identity=27.6363636363636, Blast_Score=87, Evalue=6e-18, Organism=Caenorhabditis elegans, GI17538486, Length=270, Percent_Identity=29.2592592592593, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17551412, Length=265, Percent_Identity=27.5471698113208, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=28.4090909090909, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17563726, Length=264, Percent_Identity=28.030303030303, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17536651, Length=255, Percent_Identity=30.5882352941176, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17560150, Length=264, Percent_Identity=26.8939393939394, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17565030, Length=274, Percent_Identity=28.8321167883212, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17562990, Length=265, Percent_Identity=27.9245283018868, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI72000259, Length=275, Percent_Identity=28, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17560220, Length=270, Percent_Identity=27.7777777777778, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17544670, Length=267, Percent_Identity=28.8389513108614, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI115534694, Length=249, Percent_Identity=28.1124497991968, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17567345, Length=206, Percent_Identity=28.1553398058252, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17508651, Length=256, Percent_Identity=26.953125, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17561272, Length=256, Percent_Identity=29.296875, Blast_Score=68, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6324126, Length=269, Percent_Identity=24.1635687732342, Blast_Score=69, Evalue=8e-13, Organism=Saccharomyces cerevisiae, GI6322861, Length=259, Percent_Identity=22.7799227799228, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI28571526, Length=260, Percent_Identity=34.2307692307692, Blast_Score=122, Evalue=2e-28, Organism=Drosophila melanogaster, GI23397609, Length=255, Percent_Identity=34.1176470588235, Blast_Score=121, Evalue=5e-28, Organism=Drosophila melanogaster, GI21357041, Length=260, Percent_Identity=35, Blast_Score=119, Evalue=2e-27, Organism=Drosophila melanogaster, GI24644339, Length=260, Percent_Identity=31.9230769230769, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI24639444, Length=247, Percent_Identity=29.9595141700405, Blast_Score=98, Evalue=7e-21, Organism=Drosophila melanogaster, GI24644337, Length=259, Percent_Identity=31.6602316602317, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI21355319, Length=254, Percent_Identity=30.7086614173228, Blast_Score=92, Evalue=3e-19, Organism=Drosophila melanogaster, GI17737361, Length=258, Percent_Identity=27.906976744186, Blast_Score=91, Evalue=7e-19, Organism=Drosophila melanogaster, GI24643142, Length=252, Percent_Identity=29.3650793650794, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI24665243, Length=197, Percent_Identity=31.4720812182741, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI221331218, Length=197, Percent_Identity=31.4720812182741, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI24665247, Length=198, Percent_Identity=31.3131313131313, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI221331216, Length=198, Percent_Identity=31.3131313131313, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI21358495, Length=201, Percent_Identity=28.3582089552239, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 27780; Mature: 27780
Theoretical pI: Translated: 5.27; Mature: 5.27
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDLNDKVAIVTGGATLIGAAVARDLVAAGARVAIFDIDRDNGARVAESIGEHAVFMAVD CCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHCCCEEEEEEE ITDDHAIQHAVAGVADRFGSVDILVNLACSYVDNGMQASRNDWLGAMDVNVVSAVMLSLA CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH AHPYMVKRGGGAVVNFSSISASCAQTGRWLYPTSKAAIRQLTRSMAMDFARDHIRVNSVS CCCEEEECCCCCEEEEHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHEEEECCC PGWTWSRLMDDLTHGDRAKTDRVAAPYHLLGRVGDPEEVARVVTFLCSDAASFVTGADYA CCCCHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE VDGGYSAMGPEQAQPAIPRLTE ECCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MIDLNDKVAIVTGGATLIGAAVARDLVAAGARVAIFDIDRDNGARVAESIGEHAVFMAVD CCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHCCCEEEEEEE ITDDHAIQHAVAGVADRFGSVDILVNLACSYVDNGMQASRNDWLGAMDVNVVSAVMLSLA CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH AHPYMVKRGGGAVVNFSSISASCAQTGRWLYPTSKAAIRQLTRSMAMDFARDHIRVNSVS CCCEEEECCCCCEEEEHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHEEEECCC PGWTWSRLMDDLTHGDRAKTDRVAAPYHLLGRVGDPEEVARVVTFLCSDAASFVTGADYA CCCCHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE VDGGYSAMGPEQAQPAIPRLTE ECCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7934833; 10984043 [H]