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The map label for this gene is rbsC [H]

Identifier: 238025177

GI number: 238025177

Start: 2304270

End: 2305304

Strand: Direct

Name: rbsC [H]

Synonym: bglu_2g18480

Alternate gene names: 238025177

Gene position: 2304270-2305304 (Clockwise)

Preceding gene: 238025176

Following gene: 238025178

Centisome position: 81.5

GC content: 68.31

Gene sequence:

>1035_bases
ATGCTTGACATCACATCCGATCCCACCCACGTCGCCAGGCAGGCCGCCCATCAACGGCGCCGCGACCTCATCCAGAAGTT
CGCGGCGCTGGGCAGCCTGGTCGCGCTCGTGATCGCGTTCTCGGCCGCCAGCCCGGCGTTCTTCTCGGTCGACAACCTGA
TGACCGTCTGCCTGCAGGTGACCTCGATCGCCTACCTCGGGGTCGCGGCCACCTGCGTCATCATCGCCGGCGGCATCGAT
CTGTCGGTCGGCTCCGTGCTGGCGCTGGCCGGCGTCTCGGCCGCGCTGCTCACCAAGTCCGGCGTGCCGGTGCCGGTCGC
GATGCTTTGCGGAGTCCTGGTGGGCGCGCTGTGCGGCATCGTCAACGGCATCTGCGTGACGCGCATGGGCCTGCCGCCCT
TCATCGCCACGCTCGGCATGATGCTGGTGGCGCGCGGCCTCGCGCTGCAGATCACCGGCGCACGCCCGGTATCCGATCTC
GGCGACGCGTTCGGCACGCTCGGCAACGGCGCGCTGTTCCGCATCGCACGGATCGGCGCCGACGGATTTCCCGACGTCAC
CTTCCCCGGCATTCCCTATCCGGTGGTCGTGATGGTGGTGCTGTTCGTGGGCGTGTCCGTGCTGCTGTCGAAGACCTCGC
TCGGGCGCCACATCTACGCGGTCGGCTCCAACGCCGAAGCGGCGCGGCTGTCCGGCGTCGACGTGCGCGGCGTGACGCTC
TTCACCTACGTGCTCTCCGGCGCGATGGCCGGCGTGACGGGCTGCATCCTGATGTCGCGGCTCGTGACCGGGCAGCCCAA
CGAAGGCGTCATGTACGAACTCGACGCGATCGCCAGCTCCGTGATCGGGGGCACCTCGCTGATGGGCGGCGTCGGCACCA
TCTCGGGCACCGCGATCGGCTCGTTCGTCATCGGCGTGCTGCGCAACGGCCTGAACATGAACGGCGTCTCCAGCTTCATC
CAGCAGATCATCATCGGCATCGTGATCCTGGGCACGGTCTGGATCGACCAGTTGCGCAACCGGACGACGCGGTAA

Upstream 100 bases:

>100_bases
GACCGCATCGCCGTCTTTCACGAGGGCCGCGTGACGGCGGTGCTCGACACCCCGCACACCAGCCAGGAGGAAATCATGCA
CTACGCTTCGGGGCGCACCC

Downstream 100 bases:

>100_bases
TCCCACGGCATTTGATTTCCCACGAGCAGTGCAATAACACGAGACAGGAGCGAGACATGCGGAAACTTTCCCTGCTGGCG
GTAGCGGCAATGGCGTGCGC

Product: Inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MLDITSDPTHVARQAAHQRRRDLIQKFAALGSLVALVIAFSAASPAFFSVDNLMTVCLQVTSIAYLGVAATCVIIAGGID
LSVGSVLALAGVSAALLTKSGVPVPVAMLCGVLVGALCGIVNGICVTRMGLPPFIATLGMMLVARGLALQITGARPVSDL
GDAFGTLGNGALFRIARIGADGFPDVTFPGIPYPVVVMVVLFVGVSVLLSKTSLGRHIYAVGSNAEAARLSGVDVRGVTL
FTYVLSGAMAGVTGCILMSRLVTGQPNEGVMYELDAIASSVIGGTSLMGGVGTISGTAIGSFVIGVLRNGLNMNGVSSFI
QQIIIGIVILGTVWIDQLRNRTTR

Sequences:

>Translated_344_residues
MLDITSDPTHVARQAAHQRRRDLIQKFAALGSLVALVIAFSAASPAFFSVDNLMTVCLQVTSIAYLGVAATCVIIAGGID
LSVGSVLALAGVSAALLTKSGVPVPVAMLCGVLVGALCGIVNGICVTRMGLPPFIATLGMMLVARGLALQITGARPVSDL
GDAFGTLGNGALFRIARIGADGFPDVTFPGIPYPVVVMVVLFVGVSVLLSKTSLGRHIYAVGSNAEAARLSGVDVRGVTL
FTYVLSGAMAGVTGCILMSRLVTGQPNEGVMYELDAIASSVIGGTSLMGGVGTISGTAIGSFVIGVLRNGLNMNGVSSFI
QQIIIGIVILGTVWIDQLRNRTTR
>Mature_344_residues
MLDITSDPTHVARQAAHQRRRDLIQKFAALGSLVALVIAFSAASPAFFSVDNLMTVCLQVTSIAYLGVAATCVIIAGGID
LSVGSVLALAGVSAALLTKSGVPVPVAMLCGVLVGALCGIVNGICVTRMGLPPFIATLGMMLVARGLALQITGARPVSDL
GDAFGTLGNGALFRIARIGADGFPDVTFPGIPYPVVVMVVLFVGVSVLLSKTSLGRHIYAVGSNAEAARLSGVDVRGVTL
FTYVLSGAMAGVTGCILMSRLVTGQPNEGVMYELDAIASSVIGGTSLMGGVGTISGTAIGSFVIGVLRNGLNMNGVSSFI
QQIIIGIVILGTVWIDQLRNRTTR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=331, Percent_Identity=39.8791540785499, Blast_Score=192, Evalue=3e-50,
Organism=Escherichia coli, GI1788896, Length=314, Percent_Identity=36.624203821656, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1790524, Length=338, Percent_Identity=34.0236686390533, Blast_Score=159, Evalue=4e-40,
Organism=Escherichia coli, GI1789992, Length=367, Percent_Identity=33.2425068119891, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI145693152, Length=317, Percent_Identity=32.4921135646688, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI145693214, Length=261, Percent_Identity=35.632183908046, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI1788471, Length=298, Percent_Identity=34.5637583892617, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI87082395, Length=307, Percent_Identity=32.8990228013029, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1787794, Length=298, Percent_Identity=28.8590604026846, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1787793, Length=300, Percent_Identity=30, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35177; Mature: 35177

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDITSDPTHVARQAAHQRRRDLIQKFAALGSLVALVIAFSAASPAFFSVDNLMTVCLQV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
TSIAYLGVAATCVIIAGGIDLSVGSVLALAGVSAALLTKSGVPVPVAMLCGVLVGALCGI
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
VNGICVTRMGLPPFIATLGMMLVARGLALQITGARPVSDLGDAFGTLGNGALFRIARIGA
HHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHCC
DGFPDVTFPGIPYPVVVMVVLFVGVSVLLSKTSLGRHIYAVGSNAEAARLSGVDVRGVTL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCHHHHH
FTYVLSGAMAGVTGCILMSRLVTGQPNEGVMYELDAIASSVIGGTSLMGGVGTISGTAIG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHCCHHHHCCCCCCCHHHHH
SFVIGVLRNGLNMNGVSSFIQQIIIGIVILGTVWIDQLRNRTTR
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLDITSDPTHVARQAAHQRRRDLIQKFAALGSLVALVIAFSAASPAFFSVDNLMTVCLQV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
TSIAYLGVAATCVIIAGGIDLSVGSVLALAGVSAALLTKSGVPVPVAMLCGVLVGALCGI
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
VNGICVTRMGLPPFIATLGMMLVARGLALQITGARPVSDLGDAFGTLGNGALFRIARIGA
HHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHCC
DGFPDVTFPGIPYPVVVMVVLFVGVSVLLSKTSLGRHIYAVGSNAEAARLSGVDVRGVTL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCCHHHHH
FTYVLSGAMAGVTGCILMSRLVTGQPNEGVMYELDAIASSVIGGTSLMGGVGTISGTAIG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHCCHHHHCCCCCCCHHHHH
SFVIGVLRNGLNMNGVSSFIQQIIIGIVILGTVWIDQLRNRTTR
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]