| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238024802
Identifier: 238024802
GI number: 238024802
Start: 1839926
End: 1841413
Strand: Reverse
Name: 238024802
Synonym: bglu_2g14400
Alternate gene names: NA
Gene position: 1841413-1839926 (Counterclockwise)
Preceding gene: 238024804
Following gene: 238024801
Centisome position: 65.13
GC content: 71.51
Gene sequence:
>1488_bases ATGAACGTCAACGATTCCTCGTGTTCGTCTTCGTCCCAGGCCGCCGCGCGCCTCGATCCGATTGTCGCGATGCCGGCCCA CGCGCTGTCGGCCGCGATTCGCAGCAGGGCCGTGTCGTGCGTCGAGACGATGCGCGCCTATCTCGACCGGATCGAACAGG TGAATGGCCGCGTGAACGCGATCGTCGCGCTGCGCGAGCGCGCCGTGCTGCTCGCCGAGGCCGCGCGGAAGGACGCGGCG CTCGCGCGCGGCGAATGGCAGGGCTGGCTGCACGGCATGCCGCAGGCGCCCAAGGATCTCGCGATGACGAAGGACATCGT CACCACCCTGGGCTCGCCGATCTTCCGTGATTTCCGTCCCGCCGAGGACACGCTCGGCGTCGCGCGGATGCGCGCGGCCG GCGCGATCTTCGTCGGCAAGACCAATACGCCCGAGTTCGGGCTCGGCTCGCACACGTTCAACGCGGTGTACGGCGCGACG CGCAATCCCTACGACCTGGCGAAGAGCGCCGGCGGCAGCAGCGGCGGCGCGGCCGCTGCGCTGGCCGCGCGCATGCTGCC GGTGGCCGACGGCAGCGACTTCGGCGGCTCGCTGCGCAATCCCGCCGCGTTCTGCAACGTGTTCGGCTTGCGCCCGTCGG CCGGGCGCGTGCCGCGCTGGCCGGTGCCGGACGTGTTCTACCAGCAGTTCGGCGTGGAGGGGCCGATGGGGCGCACGGTC GCCGATGTCGCGCAGTTGCTCGCGATCCAGGCCGGCCACGATCCGCGCGATCCGCTCTCGTTCGACGACGATCCGGCCCG CTTCACGCAGCCGCTCGACGCGGACCCGCGCGGCAAGCGCATCGCATGGGTCGGCGACTGGCGCGGCCATCTGGCCATCG AGCCCGGCGTGCTCGCGCTCGGCGAGCGGGCGCTCGACACGCTGCGCACGCTTGGTTGCGAGGTCGATGCGGCCTTGCCC GACTTCGAGCCGGCGCGGATCTGGCAAATCTGGCTCGCGCATCGCCACCTGATGTCGGGCGGCAGCCTGCTCGCGCTCTA TCGCGACCCGGCGCGGCGCGCGCTGCTCAAGCCGGAGGCCGTGTTCGAGGTCGAGGGGCTGCTGGCGATGACGGCCGATC AGGTATACGAAGCGAGCGTCGCGCGTAGCGCGTGGTATCAGGCCGCGCTGGCGATGTTCGAGCGCTACGATTTCCTCGCC GCGCCCACGGCGCAGGTGTTTCCGTTCGATGTCGAGGCGCGTTGGCCGGCCTCGATCGCGGGCCGCGCGATGGACAGCTA CCACCGCTGGATGGAAACCGTCACGCCGTGGACGCTGGCCGGCTTGCCGGTGATCAACGTCCCGGCCGGCTTCAACGAGG CGGGACTGCCGACCGGCATCCAGCTGATCGGCCGGCCGCGCGACGATTTCGGCCTGCTGCAGCTCGCGCATGCGTACCAG CAGGCGAGCGACTGGGTGGCCGGGCGGCCGCCCGTGATCGGGGGCTGA
Upstream 100 bases:
>100_bases GCATTTTTGCAGGAAACCCGTTTCTATAATCGCCCATGCGACGTCGGGGATGGCCTTGGCCCGACGCCCGTCTCCTCTCT ATCCATTTCCGGAATTTCGC
Downstream 100 bases:
>100_bases GCGCACGGCGGGCGGGAGCGCGGTGTTGCCGCGATGCCTGGCTCTGCCACCTTGCAAAACCTGGCCGGCCGCCGATACGT TTCGAGATGTATCGACAGTT
Product: amidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 495; Mature: 495
Protein sequence:
>495_residues MNVNDSSCSSSSQAAARLDPIVAMPAHALSAAIRSRAVSCVETMRAYLDRIEQVNGRVNAIVALRERAVLLAEAARKDAA LARGEWQGWLHGMPQAPKDLAMTKDIVTTLGSPIFRDFRPAEDTLGVARMRAAGAIFVGKTNTPEFGLGSHTFNAVYGAT RNPYDLAKSAGGSSGGAAAALAARMLPVADGSDFGGSLRNPAAFCNVFGLRPSAGRVPRWPVPDVFYQQFGVEGPMGRTV ADVAQLLAIQAGHDPRDPLSFDDDPARFTQPLDADPRGKRIAWVGDWRGHLAIEPGVLALGERALDTLRTLGCEVDAALP DFEPARIWQIWLAHRHLMSGGSLLALYRDPARRALLKPEAVFEVEGLLAMTADQVYEASVARSAWYQAALAMFERYDFLA APTAQVFPFDVEARWPASIAGRAMDSYHRWMETVTPWTLAGLPVINVPAGFNEAGLPTGIQLIGRPRDDFGLLQLAHAYQ QASDWVAGRPPVIGG
Sequences:
>Translated_495_residues MNVNDSSCSSSSQAAARLDPIVAMPAHALSAAIRSRAVSCVETMRAYLDRIEQVNGRVNAIVALRERAVLLAEAARKDAA LARGEWQGWLHGMPQAPKDLAMTKDIVTTLGSPIFRDFRPAEDTLGVARMRAAGAIFVGKTNTPEFGLGSHTFNAVYGAT RNPYDLAKSAGGSSGGAAAALAARMLPVADGSDFGGSLRNPAAFCNVFGLRPSAGRVPRWPVPDVFYQQFGVEGPMGRTV ADVAQLLAIQAGHDPRDPLSFDDDPARFTQPLDADPRGKRIAWVGDWRGHLAIEPGVLALGERALDTLRTLGCEVDAALP DFEPARIWQIWLAHRHLMSGGSLLALYRDPARRALLKPEAVFEVEGLLAMTADQVYEASVARSAWYQAALAMFERYDFLA APTAQVFPFDVEARWPASIAGRAMDSYHRWMETVTPWTLAGLPVINVPAGFNEAGLPTGIQLIGRPRDDFGLLQLAHAYQ QASDWVAGRPPVIGG >Mature_495_residues MNVNDSSCSSSSQAAARLDPIVAMPAHALSAAIRSRAVSCVETMRAYLDRIEQVNGRVNAIVALRERAVLLAEAARKDAA LARGEWQGWLHGMPQAPKDLAMTKDIVTTLGSPIFRDFRPAEDTLGVARMRAAGAIFVGKTNTPEFGLGSHTFNAVYGAT RNPYDLAKSAGGSSGGAAAALAARMLPVADGSDFGGSLRNPAAFCNVFGLRPSAGRVPRWPVPDVFYQQFGVEGPMGRTV ADVAQLLAIQAGHDPRDPLSFDDDPARFTQPLDADPRGKRIAWVGDWRGHLAIEPGVLALGERALDTLRTLGCEVDAALP DFEPARIWQIWLAHRHLMSGGSLLALYRDPARRALLKPEAVFEVEGLLAMTADQVYEASVARSAWYQAALAMFERYDFLA APTAQVFPFDVEARWPASIAGRAMDSYHRWMETVTPWTLAGLPVINVPAGFNEAGLPTGIQLIGRPRDDFGLLQLAHAYQ QASDWVAGRPPVIGG
Specific function: Unknown
COG id: COG0154
COG function: function code J; Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the amidase family [H]
Homologues:
Organism=Homo sapiens, GI195972892, Length=245, Percent_Identity=35.1020408163265, Blast_Score=134, Evalue=1e-31, Organism=Homo sapiens, GI222831590, Length=250, Percent_Identity=34.4, Blast_Score=98, Evalue=1e-20, Organism=Homo sapiens, GI166795287, Length=250, Percent_Identity=29.6, Blast_Score=74, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17537465, Length=252, Percent_Identity=31.3492063492063, Blast_Score=119, Evalue=5e-27, Organism=Caenorhabditis elegans, GI17543272, Length=455, Percent_Identity=26.1538461538462, Blast_Score=104, Evalue=8e-23, Organism=Caenorhabditis elegans, GI17556264, Length=321, Percent_Identity=28.9719626168224, Blast_Score=99, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17538252, Length=303, Percent_Identity=27.3927392739274, Blast_Score=96, Evalue=6e-20, Organism=Caenorhabditis elegans, GI71990152, Length=321, Percent_Identity=25.8566978193146, Blast_Score=96, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17556276, Length=313, Percent_Identity=27.7955271565495, Blast_Score=83, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17556278, Length=310, Percent_Identity=27.0967741935484, Blast_Score=82, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17538254, Length=220, Percent_Identity=28.6363636363636, Blast_Score=74, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6319685, Length=411, Percent_Identity=28.9537712895377, Blast_Score=108, Evalue=2e-24, Organism=Saccharomyces cerevisiae, GI6323950, Length=231, Percent_Identity=31.1688311688312, Blast_Score=87, Evalue=8e-18, Organism=Saccharomyces cerevisiae, GI6320448, Length=255, Percent_Identity=29.8039215686275, Blast_Score=85, Evalue=3e-17, Organism=Drosophila melanogaster, GI161078093, Length=520, Percent_Identity=26.3461538461538, Blast_Score=128, Evalue=7e-30, Organism=Drosophila melanogaster, GI24648435, Length=506, Percent_Identity=26.4822134387352, Blast_Score=117, Evalue=2e-26, Organism=Drosophila melanogaster, GI24648437, Length=506, Percent_Identity=26.4822134387352, Blast_Score=117, Evalue=2e-26, Organism=Drosophila melanogaster, GI24644968, Length=533, Percent_Identity=24.765478424015, Blast_Score=116, Evalue=4e-26, Organism=Drosophila melanogaster, GI24648113, Length=426, Percent_Identity=30.7511737089202, Blast_Score=115, Evalue=5e-26, Organism=Drosophila melanogaster, GI45550774, Length=507, Percent_Identity=26.4299802761341, Blast_Score=115, Evalue=8e-26, Organism=Drosophila melanogaster, GI24652985, Length=257, Percent_Identity=35.0194552529183, Blast_Score=114, Evalue=2e-25, Organism=Drosophila melanogaster, GI19922090, Length=257, Percent_Identity=35.0194552529183, Blast_Score=114, Evalue=2e-25, Organism=Drosophila melanogaster, GI24652981, Length=257, Percent_Identity=35.0194552529183, Blast_Score=114, Evalue=2e-25, Organism=Drosophila melanogaster, GI24652983, Length=257, Percent_Identity=35.0194552529183, Blast_Score=114, Evalue=2e-25, Organism=Drosophila melanogaster, GI21356731, Length=205, Percent_Identity=35.1219512195122, Blast_Score=106, Evalue=3e-23, Organism=Drosophila melanogaster, GI24648441, Length=429, Percent_Identity=24.9417249417249, Blast_Score=88, Evalue=1e-17, Organism=Drosophila melanogaster, GI24648439, Length=429, Percent_Identity=24.9417249417249, Blast_Score=88, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000120 - InterPro: IPR020556 [H]
Pfam domain/function: PF01425 Amidase [H]
EC number: =3.5.1.4 [H]
Molecular weight: Translated: 53316; Mature: 53316
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: PS00571 AMIDASES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVNDSSCSSSSQAAARLDPIVAMPAHALSAAIRSRAVSCVETMRAYLDRIEQVNGRVNA CCCCCCCCCCCHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH IVALRERAVLLAEAARKDAALARGEWQGWLHGMPQAPKDLAMTKDIVTTLGSPIFRDFRP HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHCCC AEDTLGVARMRAAGAIFVGKTNTPEFGLGSHTFNAVYGATRNPYDLAKSAGGSSGGAAAA CHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHCCCCCHHHHHHHCCCCCCCHHHH LAARMLPVADGSDFGGSLRNPAAFCNVFGLRPSAGRVPRWPVPDVFYQQFGVEGPMGRTV HHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHH ADVAQLLAIQAGHDPRDPLSFDDDPARFTQPLDADPRGKRIAWVGDWRGHLAIEPGVLAL HHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCCEEECCCHHHH GERALDTLRTLGCEVDAALPDFEPARIWQIWLAHRHLMSGGSLLALYRDPARRALLKPEA HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCHH VFEVEGLLAMTADQVYEASVARSAWYQAALAMFERYDFLAAPTAQVFPFDVEARWPASIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHH GRAMDSYHRWMETVTPWTLAGLPVINVPAGFNEAGLPTGIQLIGRPRDDFGLLQLAHAYQ HHHHHHHHHHHHHCCCHHCCCCCEEECCCCCCCCCCCCCHHEECCCCCHHHHHHHHHHHH QASDWVAGRPPVIGG HHHCCCCCCCCCCCC >Mature Secondary Structure MNVNDSSCSSSSQAAARLDPIVAMPAHALSAAIRSRAVSCVETMRAYLDRIEQVNGRVNA CCCCCCCCCCCHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH IVALRERAVLLAEAARKDAALARGEWQGWLHGMPQAPKDLAMTKDIVTTLGSPIFRDFRP HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHCCC AEDTLGVARMRAAGAIFVGKTNTPEFGLGSHTFNAVYGATRNPYDLAKSAGGSSGGAAAA CHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHCCCCCHHHHHHHCCCCCCCHHHH LAARMLPVADGSDFGGSLRNPAAFCNVFGLRPSAGRVPRWPVPDVFYQQFGVEGPMGRTV HHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHH ADVAQLLAIQAGHDPRDPLSFDDDPARFTQPLDADPRGKRIAWVGDWRGHLAIEPGVLAL HHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCCEEECCCHHHH GERALDTLRTLGCEVDAALPDFEPARIWQIWLAHRHLMSGGSLLALYRDPARRALLKPEA HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCHH VFEVEGLLAMTADQVYEASVARSAWYQAALAMFERYDFLAAPTAQVFPFDVEARWPASIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHH GRAMDSYHRWMETVTPWTLAGLPVINVPAGFNEAGLPTGIQLIGRPRDDFGLLQLAHAYQ HHHHHHHHHHHHHCCCHHCCCCCEEECCCCCCCCCCCCCHHEECCCCCHHHHHHHHHHHH QASDWVAGRPPVIGG HHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9389475 [H]