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The map label for this gene is nlpD [C]

Identifier: 238024763

GI number: 238024763

Start: 1793184

End: 1793795

Strand: Reverse

Name: nlpD [C]

Synonym: bglu_2g14010

Alternate gene names: 238024763

Gene position: 1793795-1793184 (Counterclockwise)

Preceding gene: 238024765

Following gene: 238024762

Centisome position: 63.44

GC content: 77.12

Gene sequence:

>612_bases
ATGAACGACCATCACACCATCGCATCACGAGGATCGCGCGGCGCCGCCTGGTGCGCCGCGCTGGCGGCTGCCTGCCTGGC
GGCTGGCTGCGCCGCCGGCGGCCCGCCGCTGCCGGGCGACACCCTGGCGGGCGCCCCGGCCGCCGTGCCGCCCGGCGGCC
CGCTGGCGCAGCCGAAGGCAGGGCCGGACGCCGGCGACGCGCGGCGCATCGTGCGCGCCACGCGCCGCCATGCGCAGCGC
GTGGCGCTCGCGTGGCCCGCCGACGGCCCGGTGGTCGCCGGGTTCCAGCCCGGCCGCAACCGCGGCATCGAGATCGCGGT
GCGCTCGGGCGAGCCGGTGCGTGCGGCCGCCGACGGCCGCGTGATGTATGCCGGCACCGGCCTCAACGATTACGGTTCGC
TCGTGATCGTCCAGCACAGCGCCGATATCCTCACCGCCTATGCACGCAGCGGCCGCCTGCTCGTGAAGACCGGCGACATC
GTCCGGCAGGGCGAACCGATCGCCCAGGCGGGCGCGCCGGACCGGGCGCGCGACGCGGCCGTCTGCTTCGAGGTGCGCCG
CGACGGCAAGCCTGTCGATCCGGTCGCTTACCTGCCGCCGCGGCAGGGCTGA

Upstream 100 bases:

>100_bases
GCCGATGCGGATTTTTTGTCATCGTTGCTTGCATCCGGTTACAGGTGCGCGCGGCCAATTTTGAGAAGCTTGGCGGCCCC
TGCGCACCCCCGAATTGGAC

Downstream 100 bases:

>100_bases
GGCGCGCACCTGGGCGCGGGCCGGCGGGCGGGCTCGCGCGTGAGCTGGCCGCTTGGCGGGCCGGCGTCATGGCGGCTCGC
CGCGCCGGTTCGTCGGCTCG

Product: putative peptidoglycan-binding LysM/M23B peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MNDHHTIASRGSRGAAWCAALAAACLAAGCAAGGPPLPGDTLAGAPAAVPPGGPLAQPKAGPDAGDARRIVRATRRHAQR
VALAWPADGPVVAGFQPGRNRGIEIAVRSGEPVRAAADGRVMYAGTGLNDYGSLVIVQHSADILTAYARSGRLLVKTGDI
VRQGEPIAQAGAPDRARDAAVCFEVRRDGKPVDPVAYLPPRQG

Sequences:

>Translated_203_residues
MNDHHTIASRGSRGAAWCAALAAACLAAGCAAGGPPLPGDTLAGAPAAVPPGGPLAQPKAGPDAGDARRIVRATRRHAQR
VALAWPADGPVVAGFQPGRNRGIEIAVRSGEPVRAAADGRVMYAGTGLNDYGSLVIVQHSADILTAYARSGRLLVKTGDI
VRQGEPIAQAGAPDRARDAAVCFEVRRDGKPVDPVAYLPPRQG
>Mature_203_residues
MNDHHTIASRGSRGAAWCAALAAACLAAGCAAGGPPLPGDTLAGAPAAVPPGGPLAQPKAGPDAGDARRIVRATRRHAQR
VALAWPADGPVVAGFQPGRNRGIEIAVRSGEPVRAAADGRVMYAGTGLNDYGSLVIVQHSADILTAYARSGRLLVKTGDI
VRQGEPIAQAGAPDRARDAAVCFEVRRDGKPVDPVAYLPPRQG

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=119, Percent_Identity=42.0168067226891, Blast_Score=100, Evalue=6e-23,
Organism=Escherichia coli, GI87082174, Length=125, Percent_Identity=39.2, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI87082297, Length=119, Percent_Identity=34.453781512605, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 20699; Mature: 20699

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS00099 THIOLASE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDHHTIASRGSRGAAWCAALAAACLAAGCAAGGPPLPGDTLAGAPAAVPPGGPLAQPKA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GPDAGDARRIVRATRRHAQRVALAWPADGPVVAGFQPGRNRGIEIAVRSGEPVRAAADGR
CCCCHHHHHHHHHHHHHHHEEEEECCCCCCEEECCCCCCCCCEEEEEECCCCEEEECCCE
VMYAGTGLNDYGSLVIVQHSADILTAYARSGRLLVKTGDIVRQGEPIAQAGAPDRARDAA
EEEEECCCCCCCCEEEEECCCHHHHHHHHCCEEEEEECCHHHCCCCHHHCCCCCCHHHHH
VCFEVRRDGKPVDPVAYLPPRQG
HHHHHHCCCCCCCCEECCCCCCC
>Mature Secondary Structure
MNDHHTIASRGSRGAAWCAALAAACLAAGCAAGGPPLPGDTLAGAPAAVPPGGPLAQPKA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GPDAGDARRIVRATRRHAQRVALAWPADGPVVAGFQPGRNRGIEIAVRSGEPVRAAADGR
CCCCHHHHHHHHHHHHHHHEEEEECCCCCCEEECCCCCCCCCEEEEEECCCCEEEECCCE
VMYAGTGLNDYGSLVIVQHSADILTAYARSGRLLVKTGDIVRQGEPIAQAGAPDRARDAA
EEEEECCCCCCCCEEEEECCCHHHHHHHHCCEEEEEECCHHHCCCCHHHCCCCCCHHHHH
VCFEVRRDGKPVDPVAYLPPRQG
HHHHHHCCCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]