| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is fatA [H]
Identifier: 238024518
GI number: 238024518
Start: 1434241
End: 1436508
Strand: Reverse
Name: fatA [H]
Synonym: bglu_2g11240
Alternate gene names: 238024518
Gene position: 1436508-1434241 (Counterclockwise)
Preceding gene: 238024519
Following gene: 238024517
Centisome position: 50.81
GC content: 72.09
Gene sequence:
>2268_bases ATGACACGACGATTGCCCGCGGCCGCGCTGCGACAACTCCCGCGCACGACCGCGCTGCCCCGCCGGCTGCGCCTCGGCCT GACCGTGATGGCCGCGCACGCGGCGGCGGTGGCGGCCGCGCCGGCCGACCTTGCCGCGCCGGCCGCGGCGGCATCCCCGG CCCCGGCCGGCACGGCGCCCGCCGCCCAGACGCTGCCCGTCATCGACGTGTCGGCCGCCGCCGGCTCGGCATGGCGCGCG CGCACCGCCTCGGTGACCGGCCGCGACGACGCGCCGATCCTCGACACGCCGGCCTCGATCACGGTGGTGAGCGCCGAGCG CATCGCCGACCGGCAGGCCAGGACGCTCGCCGAGCTACTGCGCGAGGACGCCTCGGTCAACGCCGACTACACGCCGGTCG GCTATTACGGCAACTTCACGATCCGCGGCTTCCCGCTCGATCCGGCCAGCGCGCTGCGCGAGGACGGCCTGACGCTGTCG GGCGAGCAGAACGTGCCGCTCGAGAACAAGGCGCGCGTCGAGATCCTGAAGGGGCTCGCCGCGCTCGACAGCGGCGTGCT CTCGCCGGGCGGCGTGGTGAACTTCGTCAGCAAGCGGCCCGAGAACGTATCGAGCGTGACGGCCGGCACGGACAGCCGCG GCTCCAGCTCGGCCTCGGTCGATCTCGGCCGCCGCTTCGGCCCGGACAACCAGTTCGGCTTGCGCGTCGAGGCCGCGCGC GAAAACATCCATTCCTATGTGGACGGCGCGAACGGCCACCGCACGTTCGGCTCGCTCGCGGCCGACTGGAACGTCACGCC GCGTGCCAGCCTGCAGGTGAATGCCGAGTTCCAGAACTGGATCCAGCGCTCGGTGTCGGGCTATCAGCTGCTGGGCGGCA CGGTGGTGCCGCCGGCCGCCTCGGCCTCGAAGCTGCTCGGCCTGCAGCCCTGGGCGAAGCCGGTGACCACCGACGCGCTG AACCTGAACGCGCGCTTCGACTATGCGCTCGACGACGCCTGGCGCCTCTACGTCACGGCCGGCCGCAGCCGCACCATGAT CGACGACGACGTGGCGTTCGCCTACGGCTGCGCCCATGTGCCGAGCTGCGGCGCGGGCGGCAGCTCGCCGTTCTTCTTCG CCTCGAACGGCGATTTCGACGTCTACGACTACCGCAGCCCCGGTGAATACCGGCGCAACGACGAGCTGCGCGCGGCGGTG GACGGCAAGTTCCGCACCGGCGCGCTGCGTCACGACCTGCTGTTCGGCGTGGGCGCGCTGCACCGCGTGGTACGGCTGTC GAATTCGGTCTACGACTACGTGGGCAGCGAGAACATCGACGGGCCCGATCTCGGTTTCGATCCGTCGCCGAACCAGCCGA GCGTGTCGTTCCCGCAGCTCGACGCGTGGCAGGTGTCGCTGTTCGGCACCGACCGCATCAGCTTCGGCGAGCACTGGCAA CTGCTGGCGGGCGGCCGCCAGGTGCTGCTGCGCCAGCGCGCCTGGACCAGCCAGGACGGCCCGGCCGGCCGCACCGACCG CAGCAAGTTCCTGCCGCAGCTCGCGCTGGTCTACAAGCCGGTCGCGCCGCTGACGTTCTACGGCTCGTACAGCCGGGATC TCTCGCTCGGCGACCAGGCGCCGGTGCGCGCGAGCAACGCCTACGCGTTCCTGCCGCCGCTCGAATCGAGCGCCTATGAG CTCGGCGCGAAATACGACTGGGCCAATCGCGTGACGCTGACGGCCGCCGCGTTCTCGATCAGCCGCCCGTTCCAGTTCGC GCAGCCCGACGATTCCGCCGCCGGCTATACGTTCGTGCAGCGCGGCCGGGAGCGCCACGACGGCATCGAGCTGGGCGCCG CGGGCCGCCTGACCGAGCGGCTGGCGCTGAACGCGAGCCTCGCGGCGATCCGCGCGCGCGCCTACGACTCGGGCTCGCCC GCCTACGAAGGCCACCAGGTGATCAACCTGCCGGCGCTGCGCGCGACGCTGAACGCCGACTACGCGGTGCCGGGGCTGCC CGGCTTGCACCTGCTCGGCGGGATCGAATACAGCGCGAGCCGCAACGCGAACGAAGAGGGCACCACGCGCGTGCCGGGCT GGCTCGTGTTCAACGCCGGCGCGCGCTATACGACGAAGCTTGGCGGCCACCGCGTCACGGCCCGGCTGTGGGTCGACAAC CTGTTCAACCGCTATTACTGGCGCGATGCCGGCGAGCAGCAGGGCGACGCCTACCTGTTCCTCGGCGCGCCGCGCACGGC CCGGCTCTCGGTCACCTGCGACTTCTGA
Upstream 100 bases:
>100_bases CGCCGCGCGCCGCGCGCTGGCGGCCGTGCCGCGCCGCTGCGCTATGATCACGCCTTTTGAGCGCGCCGCCCGCCGGCGCG AGCGCATTTCCGACTTCCCG
Downstream 100 bases:
>100_bases TCCGGCCCGCCACGTTCTCCGGAGACGTCAACCCATGTCCCCCCTCGAAATCACCGGCGTGATCGTGAGCGCGCTGGCGA TCTGGCTGGCCGCGCGGCGC
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: OM2 [H]
Number of amino acids: Translated: 755; Mature: 754
Protein sequence:
>755_residues MTRRLPAAALRQLPRTTALPRRLRLGLTVMAAHAAAVAAAPADLAAPAAAASPAPAGTAPAAQTLPVIDVSAAAGSAWRA RTASVTGRDDAPILDTPASITVVSAERIADRQARTLAELLREDASVNADYTPVGYYGNFTIRGFPLDPASALREDGLTLS GEQNVPLENKARVEILKGLAALDSGVLSPGGVVNFVSKRPENVSSVTAGTDSRGSSSASVDLGRRFGPDNQFGLRVEAAR ENIHSYVDGANGHRTFGSLAADWNVTPRASLQVNAEFQNWIQRSVSGYQLLGGTVVPPAASASKLLGLQPWAKPVTTDAL NLNARFDYALDDAWRLYVTAGRSRTMIDDDVAFAYGCAHVPSCGAGGSSPFFFASNGDFDVYDYRSPGEYRRNDELRAAV DGKFRTGALRHDLLFGVGALHRVVRLSNSVYDYVGSENIDGPDLGFDPSPNQPSVSFPQLDAWQVSLFGTDRISFGEHWQ LLAGGRQVLLRQRAWTSQDGPAGRTDRSKFLPQLALVYKPVAPLTFYGSYSRDLSLGDQAPVRASNAYAFLPPLESSAYE LGAKYDWANRVTLTAAAFSISRPFQFAQPDDSAAGYTFVQRGRERHDGIELGAAGRLTERLALNASLAAIRARAYDSGSP AYEGHQVINLPALRATLNADYAVPGLPGLHLLGGIEYSASRNANEEGTTRVPGWLVFNAGARYTTKLGGHRVTARLWVDN LFNRYYWRDAGEQQGDAYLFLGAPRTARLSVTCDF
Sequences:
>Translated_755_residues MTRRLPAAALRQLPRTTALPRRLRLGLTVMAAHAAAVAAAPADLAAPAAAASPAPAGTAPAAQTLPVIDVSAAAGSAWRA RTASVTGRDDAPILDTPASITVVSAERIADRQARTLAELLREDASVNADYTPVGYYGNFTIRGFPLDPASALREDGLTLS GEQNVPLENKARVEILKGLAALDSGVLSPGGVVNFVSKRPENVSSVTAGTDSRGSSSASVDLGRRFGPDNQFGLRVEAAR ENIHSYVDGANGHRTFGSLAADWNVTPRASLQVNAEFQNWIQRSVSGYQLLGGTVVPPAASASKLLGLQPWAKPVTTDAL NLNARFDYALDDAWRLYVTAGRSRTMIDDDVAFAYGCAHVPSCGAGGSSPFFFASNGDFDVYDYRSPGEYRRNDELRAAV DGKFRTGALRHDLLFGVGALHRVVRLSNSVYDYVGSENIDGPDLGFDPSPNQPSVSFPQLDAWQVSLFGTDRISFGEHWQ LLAGGRQVLLRQRAWTSQDGPAGRTDRSKFLPQLALVYKPVAPLTFYGSYSRDLSLGDQAPVRASNAYAFLPPLESSAYE LGAKYDWANRVTLTAAAFSISRPFQFAQPDDSAAGYTFVQRGRERHDGIELGAAGRLTERLALNASLAAIRARAYDSGSP AYEGHQVINLPALRATLNADYAVPGLPGLHLLGGIEYSASRNANEEGTTRVPGWLVFNAGARYTTKLGGHRVTARLWVDN LFNRYYWRDAGEQQGDAYLFLGAPRTARLSVTCDF >Mature_754_residues TRRLPAAALRQLPRTTALPRRLRLGLTVMAAHAAAVAAAPADLAAPAAAASPAPAGTAPAAQTLPVIDVSAAAGSAWRAR TASVTGRDDAPILDTPASITVVSAERIADRQARTLAELLREDASVNADYTPVGYYGNFTIRGFPLDPASALREDGLTLSG EQNVPLENKARVEILKGLAALDSGVLSPGGVVNFVSKRPENVSSVTAGTDSRGSSSASVDLGRRFGPDNQFGLRVEAARE NIHSYVDGANGHRTFGSLAADWNVTPRASLQVNAEFQNWIQRSVSGYQLLGGTVVPPAASASKLLGLQPWAKPVTTDALN LNARFDYALDDAWRLYVTAGRSRTMIDDDVAFAYGCAHVPSCGAGGSSPFFFASNGDFDVYDYRSPGEYRRNDELRAAVD GKFRTGALRHDLLFGVGALHRVVRLSNSVYDYVGSENIDGPDLGFDPSPNQPSVSFPQLDAWQVSLFGTDRISFGEHWQL LAGGRQVLLRQRAWTSQDGPAGRTDRSKFLPQLALVYKPVAPLTFYGSYSRDLSLGDQAPVRASNAYAFLPPLESSAYEL GAKYDWANRVTLTAAAFSISRPFQFAQPDDSAAGYTFVQRGRERHDGIELGAAGRLTERLALNASLAAIRARAYDSGSPA YEGHQVINLPALRATLNADYAVPGLPGLHLLGGIEYSASRNANEEGTTRVPGWLVFNAGARYTTKLGGHRVTARLWVDNL FNRYYWRDAGEQQGDAYLFLGAPRTARLSVTCDF
Specific function: Anguibactin receptor, essential component of the iron uptake system of V.anguillarum [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=752, Percent_Identity=25, Blast_Score=113, Evalue=6e-26, Organism=Escherichia coli, GI1787344, Length=747, Percent_Identity=23.8286479250335, Blast_Score=97, Evalue=3e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 81029; Mature: 80898
Theoretical pI: Translated: 8.06; Mature: 8.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRRLPAAALRQLPRTTALPRRLRLGLTVMAAHAAAVAAAPADLAAPAAAASPAPAGTAP CCCCCCHHHHHHCCCHHCCCHHHHHCHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCC AAQTLPVIDVSAAAGSAWRARTASVTGRDDAPILDTPASITVVSAERIADRQARTLAELL CCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHH REDASVNADYTPVGYYGNFTIRGFPLDPASALREDGLTLSGEQNVPLENKARVEILKGLA HHHCCCCCCCCCEEEECCEEEEECCCCHHHHHHHCCCEECCCCCCCCCCCHHHHHHHHHH ALDSGVLSPGGVVNFVSKRPENVSSVTAGTDSRGSSSASVDLGRRFGPDNQFGLRVEAAR HHHCCCCCCCCEEHHHHCCCCCCCEEECCCCCCCCCCCEEEHHHHCCCCCCCCEEEHHHH ENIHSYVDGANGHRTFGSLAADWNVTPRASLQVNAEFQNWIQRSVSGYQLLGGTVVPPAA HHHHHHHCCCCCCCCCCCEEECCCCCCCCEEEECCHHHHHHHHCCCCEEEECCEECCCCC SASKLLGLQPWAKPVTTDALNLNARFDYALDDAWRLYVTAGRSRTMIDDDVAFAYGCAHV CHHHHCCCCCCCCCCCCCEEEECEEECEEECCCEEEEEEECCCCCEECCCHHHHHCCCCC PSCGAGGSSPFFFASNGDFDVYDYRSPGEYRRNDELRAAVDGKFRTGALRHDLLFGVGAL CCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH HRVVRLSNSVYDYVGSENIDGPDLGFDPSPNQPSVSFPQLDAWQVSLFGTDRISFGEHWQ HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEE LLAGGRQVLLRQRAWTSQDGPAGRTDRSKFLPQLALVYKPVAPLTFYGSYSRDLSLGDQA EHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCC PVRASNAYAFLPPLESSAYELGAKYDWANRVTLTAAAFSISRPFQFAQPDDSAAGYTFVQ CCCCCCCEEECCCCCCCHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHH RGRERHDGIELGAAGRLTERLALNASLAAIRARAYDSGSPAYEGHQVINLPALRATLNAD CCHHHCCCEEECCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCEEEECCHHEEECCCC YAVPGLPGLHLLGGIEYSASRNANEEGTTRVPGWLVFNAGARYTTKLGGHRVTARLWVDN CCCCCCCCHHHHCCCEECCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCEEEEHHHHHH LFNRYYWRDAGEQQGDAYLFLGAPRTARLSVTCDF HHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEECC >Mature Secondary Structure TRRLPAAALRQLPRTTALPRRLRLGLTVMAAHAAAVAAAPADLAAPAAAASPAPAGTAP CCCCCHHHHHHCCCHHCCCHHHHHCHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCC AAQTLPVIDVSAAAGSAWRARTASVTGRDDAPILDTPASITVVSAERIADRQARTLAELL CCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHH REDASVNADYTPVGYYGNFTIRGFPLDPASALREDGLTLSGEQNVPLENKARVEILKGLA HHHCCCCCCCCCEEEECCEEEEECCCCHHHHHHHCCCEECCCCCCCCCCCHHHHHHHHHH ALDSGVLSPGGVVNFVSKRPENVSSVTAGTDSRGSSSASVDLGRRFGPDNQFGLRVEAAR HHHCCCCCCCCEEHHHHCCCCCCCEEECCCCCCCCCCCEEEHHHHCCCCCCCCEEEHHHH ENIHSYVDGANGHRTFGSLAADWNVTPRASLQVNAEFQNWIQRSVSGYQLLGGTVVPPAA HHHHHHHCCCCCCCCCCCEEECCCCCCCCEEEECCHHHHHHHHCCCCEEEECCEECCCCC SASKLLGLQPWAKPVTTDALNLNARFDYALDDAWRLYVTAGRSRTMIDDDVAFAYGCAHV CHHHHCCCCCCCCCCCCCEEEECEEECEEECCCEEEEEEECCCCCEECCCHHHHHCCCCC PSCGAGGSSPFFFASNGDFDVYDYRSPGEYRRNDELRAAVDGKFRTGALRHDLLFGVGAL CCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH HRVVRLSNSVYDYVGSENIDGPDLGFDPSPNQPSVSFPQLDAWQVSLFGTDRISFGEHWQ HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEE LLAGGRQVLLRQRAWTSQDGPAGRTDRSKFLPQLALVYKPVAPLTFYGSYSRDLSLGDQA EHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCC PVRASNAYAFLPPLESSAYELGAKYDWANRVTLTAAAFSISRPFQFAQPDDSAAGYTFVQ CCCCCCCEEECCCCCCCHHHCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHH RGRERHDGIELGAAGRLTERLALNASLAAIRARAYDSGSPAYEGHQVINLPALRATLNAD CCHHHCCCEEECCCCHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCEEEECCHHEEECCCC YAVPGLPGLHLLGGIEYSASRNANEEGTTRVPGWLVFNAGARYTTKLGGHRVTARLWVDN CCCCCCCCHHHHCCCEECCCCCCCCCCCCCCCEEEEEECCCCEEEECCCCEEEEHHHHHH LFNRYYWRDAGEQQGDAYLFLGAPRTARLSVTCDF HHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2830268; 13129954; 2311935 [H]