| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238024493
Identifier: 238024493
GI number: 238024493
Start: 1395408
End: 1397222
Strand: Reverse
Name: 238024493
Synonym: bglu_2g10930
Alternate gene names: NA
Gene position: 1397222-1395408 (Counterclockwise)
Preceding gene: 238024494
Following gene: 238024492
Centisome position: 49.42
GC content: 64.24
Gene sequence:
>1815_bases ATGGAAAACGACGACCCGATTCTGCGCTACTACGAGGCGGAAATGCGCTATTTGCGCGAGTCCGGCAGGGAGTTCGCGAA AGCGCATCCCGATCGCGCGCGCCTGCTCAACCTCGATCGCGTGGGCGACCGCGATCCGTATGTCGAGCGGCTGTTCGAGG GCTTTGCATTCCTGACCGGCCGGCTTCGACAGAAACTCGACGATGAACTGCCGGAGCTCACCGAGGGACTCGTGAGCCTC CTATGGCCGCACTATCTGCGGATGATCCCGTCGCTGTCGGTGGTCCAGCTGATCCCGCTCGCGGACAAGCTGCAAAAAAC CGAGATCGTGCCGGCAGGCGTGCCGGTTCGCTCCGCGCCGATTGCGATACCGCCGCCGGCCGGCGCCGATGGCTCGGTGC CGAAGACGGTTCAGTGTCTATACCGAACCACGCAGGCCGTGACGCTGCAGCCGCTTTCGATCACGCATGCCGGCCCGAGT GTGCGCCATGACGGCCGTTCGGTGATCCGGATCGGGTTCGCGCTCGACGGGTCGGCGCGCCGCAACGAAACGGACCTGAC GCGACTGCGCGTGCATCTGAATGCGGATCTGCCGACTGCGTTCGCAATGCATCTCGCGCTTACGCGCCAGGTCGATGCAA TCACCTGGCGCATTCCGGAAATCCGCGACGGCGAAGCGGTGCCGCTCTCCGGCGTCACGATCGAGCCGGCCGGTTTTTCG ACCGAAGAACGGCTGTGGCCGAAGGCCGAGGCGGCTTTCTCGGGCTACCAGCTGCTGCTCGAGTATTTTACGTTCCGCGA GAAATTCCTGTTCGTCGACCTACGCGGAGTCGACATCACGAAGCTGCCCGCGAGCGCGACCCGCTTCGAGCTGGAAATCG TATTGAAGCAGGCCTATCCGTCGGACCAGCGCTTCAGCGCCGAGAACCTGCGCCTCTTCTGCAGCCCGGTGATCAATCTG TTCGAACTGGATGCCGAACCGATCGTGATCGATCATCACGAAACCGAATATCGCGTGGTGCCGGCAGGTCATCAGGGCGG GCATGTCGAAACCTACTCGGTCGACGCCATTGCGACATTCGACCATGACACGGCCGAGCGATACGAATACGTGCCGTTCG CTACCTTCCGGCACCGCGGCGGCATGTTGCGGCACGAGGCGCCGGAGCGCTATTTCCATACGCGCGTGCGACCGGGTGTG TCCGGGCTGCACGAAACCTGGGTGATTCTCGGCGGTCATGCCTGGGAGACCATGGACACGCTGCCCGAGGAAAGCCTGTC GCTGCGTGTGACGGGCACGAACGGACTGTTGCCGCGCAAGGGGCTGCGTGAAGCCAGCCTCGACGAGCTGGCGGCCAGCC CCCCGAACGTCGCGGGCGTACGCAACCTCGTGTCGCCGACCTTGCCGCTGTATCCGCCGACCGAAGACCGTTTCCAGTGG CGCGTGTTATCGCATCTGGCGCCGAACTTCCTGTCGATGATGAATGCGGAAGTGCTGCGCGGTGCACTCGCACTGTACGA CTGGACCGACGACGAGCTGAATCGCCGCCGGCTGGCCGGCATCCGGTGGGTCTCGCAGGAGCTCATCGAGGAGGTGACGG GCGGCTCGGTCGAGCGTGGCGTGCTGATCGAGGTGACGCTCGATTCGCATGCGTTTTCGGGCGAGGGCGACGTGATGCTG TTCGGCGAGCTGCTGCACCGGTTCTTCGCGCAGTACGCGGAAATCAACCTGTTCACCAAGCTGTCGATCGTGAGCCTGCC GTCGCAGACCCGCACGATCTGGCCGCGCAGCAAAGCGCAGCGGGCTCCGCTATGA
Upstream 100 bases:
>100_bases CGACAAGCCGGCGCTGGCCCGCCGCATCGGTGAACTGCAGGCGGAACTGACCGTGCTCGATCCGGCGCGTGCCCTGACTC TCTCATAAGAACGAAGATCA
Downstream 100 bases:
>100_bases GCGCGCGCGAACCGAAGGAAGTCTCCTTGGGGGACGAACTGCCGAATCTCGAGCCACTCGTCGCGTCGCTGCTCGCTCGC GCGCCCCGCATGAATTTCAT
Product: type VI secretion protein
Products: NA
Alternate protein names: Type VI Secretion Protein Family; T6ss C; Type VI Secretion System; Type VI Secretion System Protein EvpF; Type VI Secretion System Protein; Type VI Secretion Protein VasA; Type VI Secretion; Type VI Secretion System Core Protein; Protein ImpG; Cytoplasmic Protein SciC; Type VI Secretion System Protein ImpG; Conserved Protein; Protein ImpG/VasA
Number of amino acids: Translated: 604; Mature: 604
Protein sequence:
>604_residues MENDDPILRYYEAEMRYLRESGREFAKAHPDRARLLNLDRVGDRDPYVERLFEGFAFLTGRLRQKLDDELPELTEGLVSL LWPHYLRMIPSLSVVQLIPLADKLQKTEIVPAGVPVRSAPIAIPPPAGADGSVPKTVQCLYRTTQAVTLQPLSITHAGPS VRHDGRSVIRIGFALDGSARRNETDLTRLRVHLNADLPTAFAMHLALTRQVDAITWRIPEIRDGEAVPLSGVTIEPAGFS TEERLWPKAEAAFSGYQLLLEYFTFREKFLFVDLRGVDITKLPASATRFELEIVLKQAYPSDQRFSAENLRLFCSPVINL FELDAEPIVIDHHETEYRVVPAGHQGGHVETYSVDAIATFDHDTAERYEYVPFATFRHRGGMLRHEAPERYFHTRVRPGV SGLHETWVILGGHAWETMDTLPEESLSLRVTGTNGLLPRKGLREASLDELAASPPNVAGVRNLVSPTLPLYPPTEDRFQW RVLSHLAPNFLSMMNAEVLRGALALYDWTDDELNRRRLAGIRWVSQELIEEVTGGSVERGVLIEVTLDSHAFSGEGDVML FGELLHRFFAQYAEINLFTKLSIVSLPSQTRTIWPRSKAQRAPL
Sequences:
>Translated_604_residues MENDDPILRYYEAEMRYLRESGREFAKAHPDRARLLNLDRVGDRDPYVERLFEGFAFLTGRLRQKLDDELPELTEGLVSL LWPHYLRMIPSLSVVQLIPLADKLQKTEIVPAGVPVRSAPIAIPPPAGADGSVPKTVQCLYRTTQAVTLQPLSITHAGPS VRHDGRSVIRIGFALDGSARRNETDLTRLRVHLNADLPTAFAMHLALTRQVDAITWRIPEIRDGEAVPLSGVTIEPAGFS TEERLWPKAEAAFSGYQLLLEYFTFREKFLFVDLRGVDITKLPASATRFELEIVLKQAYPSDQRFSAENLRLFCSPVINL FELDAEPIVIDHHETEYRVVPAGHQGGHVETYSVDAIATFDHDTAERYEYVPFATFRHRGGMLRHEAPERYFHTRVRPGV SGLHETWVILGGHAWETMDTLPEESLSLRVTGTNGLLPRKGLREASLDELAASPPNVAGVRNLVSPTLPLYPPTEDRFQW RVLSHLAPNFLSMMNAEVLRGALALYDWTDDELNRRRLAGIRWVSQELIEEVTGGSVERGVLIEVTLDSHAFSGEGDVML FGELLHRFFAQYAEINLFTKLSIVSLPSQTRTIWPRSKAQRAPL >Mature_604_residues MENDDPILRYYEAEMRYLRESGREFAKAHPDRARLLNLDRVGDRDPYVERLFEGFAFLTGRLRQKLDDELPELTEGLVSL LWPHYLRMIPSLSVVQLIPLADKLQKTEIVPAGVPVRSAPIAIPPPAGADGSVPKTVQCLYRTTQAVTLQPLSITHAGPS VRHDGRSVIRIGFALDGSARRNETDLTRLRVHLNADLPTAFAMHLALTRQVDAITWRIPEIRDGEAVPLSGVTIEPAGFS TEERLWPKAEAAFSGYQLLLEYFTFREKFLFVDLRGVDITKLPASATRFELEIVLKQAYPSDQRFSAENLRLFCSPVINL FELDAEPIVIDHHETEYRVVPAGHQGGHVETYSVDAIATFDHDTAERYEYVPFATFRHRGGMLRHEAPERYFHTRVRPGV SGLHETWVILGGHAWETMDTLPEESLSLRVTGTNGLLPRKGLREASLDELAASPPNVAGVRNLVSPTLPLYPPTEDRFQW RVLSHLAPNFLSMMNAEVLRGALALYDWTDDELNRRRLAGIRWVSQELIEEVTGGSVERGVLIEVTLDSHAFSGEGDVML FGELLHRFFAQYAEINLFTKLSIVSLPSQTRTIWPRSKAQRAPL
Specific function: Unknown
COG id: COG3519
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68118; Mature: 68118
Theoretical pI: Translated: 6.03; Mature: 6.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENDDPILRYYEAEMRYLRESGREFAKAHPDRARLLNLDRVGDRDPYVERLFEGFAFLTG CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCCCHHHHHHHHHHHHHHH RLRQKLDDELPELTEGLVSLLWPHYLRMIPSLSVVQLIPLADKLQKTEIVPAGVPVRSAP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHCCCCCCCCCCCCCC IAIPPPAGADGSVPKTVQCLYRTTQAVTLQPLSITHAGPSVRHDGRSVIRIGFALDGSAR EECCCCCCCCCCCCHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCEEEEEEEEECCCCC RNETDLTRLRVHLNADLPTAFAMHLALTRQVDAITWRIPEIRDGEAVPLSGVTIEPAGFS CCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCEEECCCCCC TEERLWPKAEAAFSGYQLLLEYFTFREKFLFVDLRGVDITKLPASATRFELEIVLKQAYP HHHHCCCCHHHHHHHHHHHHHHHHHHCEEEEEEECCCEEEECCCCCCEEEEEEEEECCCC SDQRFSAENLRLFCSPVINLFELDAEPIVIDHHETEYRVVPAGHQGGHVETYSVDAIATF CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEECCCCCCCEEEEEEEEEEEC DHDTAERYEYVPFATFRHRGGMLRHEAPERYFHTRVRPGVSGLHETWVILGGHAWETMDT CCCHHHHEECCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHC LPEESLSLRVTGTNGLLPRKGLREASLDELAASPPNVAGVRNLVSPTLPLYPPTEDRFQW CCCCCEEEEEECCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHH RVLSHLAPNFLSMMNAEVLRGALALYDWTDDELNRRRLAGIRWVSQELIEEVTGGSVERG HHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC VLIEVTLDSHAFSGEGDVMLFGELLHRFFAQYAEINLFTKLSIVSLPSQTRTIWPRSKAQ EEEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCEECCCCCCC RAPL CCCC >Mature Secondary Structure MENDDPILRYYEAEMRYLRESGREFAKAHPDRARLLNLDRVGDRDPYVERLFEGFAFLTG CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCCCHHHHHHHHHHHHHHH RLRQKLDDELPELTEGLVSLLWPHYLRMIPSLSVVQLIPLADKLQKTEIVPAGVPVRSAP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHCCCCCCCCCCCCCC IAIPPPAGADGSVPKTVQCLYRTTQAVTLQPLSITHAGPSVRHDGRSVIRIGFALDGSAR EECCCCCCCCCCCCHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCEEEEEEEEECCCCC RNETDLTRLRVHLNADLPTAFAMHLALTRQVDAITWRIPEIRDGEAVPLSGVTIEPAGFS CCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCEEECCCCCC TEERLWPKAEAAFSGYQLLLEYFTFREKFLFVDLRGVDITKLPASATRFELEIVLKQAYP HHHHCCCCHHHHHHHHHHHHHHHHHHCEEEEEEECCCEEEECCCCCCEEEEEEEEECCCC SDQRFSAENLRLFCSPVINLFELDAEPIVIDHHETEYRVVPAGHQGGHVETYSVDAIATF CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEECCCCCCCEEEEEEEEEEEC DHDTAERYEYVPFATFRHRGGMLRHEAPERYFHTRVRPGVSGLHETWVILGGHAWETMDT CCCHHHHEECCCCHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHC LPEESLSLRVTGTNGLLPRKGLREASLDELAASPPNVAGVRNLVSPTLPLYPPTEDRFQW CCCCCEEEEEECCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHHH RVLSHLAPNFLSMMNAEVLRGALALYDWTDDELNRRRLAGIRWVSQELIEEVTGGSVERG HHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC VLIEVTLDSHAFSGEGDVMLFGELLHRFFAQYAEINLFTKLSIVSLPSQTRTIWPRSKAQ EEEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCEECCCCCCC RAPL CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA