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The map label for this gene is yfdE [H]

Identifier: 238024364

GI number: 238024364

Start: 1175764

End: 1176978

Strand: Direct

Name: yfdE [H]

Synonym: bglu_2g09570

Alternate gene names: 238024364

Gene position: 1175764-1176978 (Clockwise)

Preceding gene: 238024363

Following gene: 238024365

Centisome position: 41.59

GC content: 67.49

Gene sequence:

>1215_bases
ATGAAGCAGGCTCGTCCACTCGAAGGGATGCGCGTGGTCGACTACAGCCACTTTCTCGCGGGGCCTTACGTGGGGCGCTG
CCTCGCCGCGCTGGGCGCGGACGTGATCAAGGTCGAACGACCCGGCGGCGGCGACGCGGGCCGCCAGCACGCCACCGTGC
TCGACGCGCGTTCGAGCGGCTATTTCCTGCAGCTGAACATGGGCAAGCGCGGCGTCAGCGTGAACATGAAGGAGCCGCGC
GGCAGGGCTTTCATGGAACGGCTGTGCGACTCGGCGGACGTGTTCGTGGAGAACTATCGTCCCGGCGCGCTCGACAAGCT
CGGGCTCGGCTACGAAGCACTGTCGGCGCGCAATCCCGGGTTGGTCTACTGCTCGATTTCGGCATATGGGCACACCGGAC
CGGACGCGCATCGCGCCGGCTTCGGCCTGATTGCCGAGGCCAAGAGCGGCATCATGCAGATGGTCGGTTCGCCGGGCGAG
CGTCCGCCGCTGCTGCGCATTTCGCTCGGCGACATGTACACGGGAATCCATGCGGTCGCGGCGATCAATGCGGCCCTGCT
CGGCCGCGTGAAAAGCGGGCGCGGGCAGCATATCGACATGGCGCTCTACGACACGCTGGTGTCGATGCACGAGTACGCGG
TCCAGTGCTACACGCTTGCCGATGTCCTGCCCGAGCAGACCGGACACGACATGCCCGGCTCCACGCTGTACGGCGTGTTC
CGCGCGACCGACGGCGATCTGGTGATCGCGGCGCAGGTGGACGAGGCATGGAAGCGCTTCGCCGCGCTGATCGAGGCGAA
CGGCGGCCCGCCAGGCTTCGGCGCCGATCCGCGGTTTCACGACAGCGTGGGGCGCAACGCCCATCGGCGCGAGATTCTCG
CGGTGGTCGAGCCGTGGGTCGGCGCACGCACGGTCGCGCGGATTCTCGAGCTGCTCGACGCCATCGACGTGCCGTGCGCA
AAGGTGCAGCGTATCGACGAAGTGATTGCCGATCCGCAGATCCAGGCGCGCGGCATGATCGTCGAGCAGGAGCACCCGCG
TTACGGCACGCTGCGCCTGCCCAACTTGCCGTTCCGCTTTTCCGGGTGCGACACCACGATTCGCGAGGTCGCGCCCGATC
TGGGCCAGCACAACGCCGAAATCGCGCGAGCGCTGGGTTTCACGGCGGCCGAGATCGAGGCGATGCAGGCCGATGGCGTG
CTGTACGACAAGTGA

Upstream 100 bases:

>100_bases
GCATCGTGATACTGCCGTCGGAGCTGATCAACCAGCAGGGCGAGGTCGTGCAACGCGGCGAACATCGCCTGATGGTGCCG
CGTCGGCCGGGAGCCGCGCG

Downstream 100 bases:

>100_bases
GGCGACGATGCGCGATACCTATGCCGTGATCGGCAACCCCATTGGCCATACCAAATCGCCGATGATTCATCGGATGTTCG
CCGATGCGACCCGGCAGGCG

Product: Formyl-CoA transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MKQARPLEGMRVVDYSHFLAGPYVGRCLAALGADVIKVERPGGGDAGRQHATVLDARSSGYFLQLNMGKRGVSVNMKEPR
GRAFMERLCDSADVFVENYRPGALDKLGLGYEALSARNPGLVYCSISAYGHTGPDAHRAGFGLIAEAKSGIMQMVGSPGE
RPPLLRISLGDMYTGIHAVAAINAALLGRVKSGRGQHIDMALYDTLVSMHEYAVQCYTLADVLPEQTGHDMPGSTLYGVF
RATDGDLVIAAQVDEAWKRFAALIEANGGPPGFGADPRFHDSVGRNAHRREILAVVEPWVGARTVARILELLDAIDVPCA
KVQRIDEVIADPQIQARGMIVEQEHPRYGTLRLPNLPFRFSGCDTTIREVAPDLGQHNAEIARALGFTAAEIEAMQADGV
LYDK

Sequences:

>Translated_404_residues
MKQARPLEGMRVVDYSHFLAGPYVGRCLAALGADVIKVERPGGGDAGRQHATVLDARSSGYFLQLNMGKRGVSVNMKEPR
GRAFMERLCDSADVFVENYRPGALDKLGLGYEALSARNPGLVYCSISAYGHTGPDAHRAGFGLIAEAKSGIMQMVGSPGE
RPPLLRISLGDMYTGIHAVAAINAALLGRVKSGRGQHIDMALYDTLVSMHEYAVQCYTLADVLPEQTGHDMPGSTLYGVF
RATDGDLVIAAQVDEAWKRFAALIEANGGPPGFGADPRFHDSVGRNAHRREILAVVEPWVGARTVARILELLDAIDVPCA
KVQRIDEVIADPQIQARGMIVEQEHPRYGTLRLPNLPFRFSGCDTTIREVAPDLGQHNAEIARALGFTAAEIEAMQADGV
LYDK
>Mature_404_residues
MKQARPLEGMRVVDYSHFLAGPYVGRCLAALGADVIKVERPGGGDAGRQHATVLDARSSGYFLQLNMGKRGVSVNMKEPR
GRAFMERLCDSADVFVENYRPGALDKLGLGYEALSARNPGLVYCSISAYGHTGPDAHRAGFGLIAEAKSGIMQMVGSPGE
RPPLLRISLGDMYTGIHAVAAINAALLGRVKSGRGQHIDMALYDTLVSMHEYAVQCYTLADVLPEQTGHDMPGSTLYGVF
RATDGDLVIAAQVDEAWKRFAALIEANGGPPGFGADPRFHDSVGRNAHRREILAVVEPWVGARTVARILELLDAIDVPCA
KVQRIDEVIADPQIQARGMIVEQEHPRYGTLRLPNLPFRFSGCDTTIREVAPDLGQHNAEIARALGFTAAEIEAMQADGV
LYDK

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=385, Percent_Identity=31.4285714285714, Blast_Score=228, Evalue=9e-60,
Organism=Homo sapiens, GI300863124, Length=409, Percent_Identity=29.5843520782396, Blast_Score=213, Evalue=2e-55,
Organism=Homo sapiens, GI300863126, Length=385, Percent_Identity=28.051948051948, Blast_Score=183, Evalue=2e-46,
Organism=Homo sapiens, GI13376042, Length=409, Percent_Identity=25.4278728606357, Blast_Score=162, Evalue=5e-40,
Organism=Homo sapiens, GI266456254, Length=406, Percent_Identity=27.3399014778325, Blast_Score=132, Evalue=5e-31,
Organism=Homo sapiens, GI42794625, Length=406, Percent_Identity=27.3399014778325, Blast_Score=132, Evalue=5e-31,
Organism=Homo sapiens, GI266458393, Length=252, Percent_Identity=30.5555555555556, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI266458397, Length=251, Percent_Identity=30.2788844621514, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI42822893, Length=145, Percent_Identity=36.551724137931, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI266458395, Length=145, Percent_Identity=36.551724137931, Blast_Score=88, Evalue=1e-17,
Organism=Escherichia coli, GI87082093, Length=377, Percent_Identity=32.6259946949602, Blast_Score=208, Evalue=6e-55,
Organism=Escherichia coli, GI1788717, Length=419, Percent_Identity=30.5489260143198, Blast_Score=190, Evalue=2e-49,
Organism=Escherichia coli, GI1786222, Length=410, Percent_Identity=25.609756097561, Blast_Score=120, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI32564160, Length=268, Percent_Identity=25.7462686567164, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI115535051, Length=248, Percent_Identity=25.4032258064516, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24648431, Length=402, Percent_Identity=32.8358208955224, Blast_Score=216, Evalue=2e-56,
Organism=Drosophila melanogaster, GI24585488, Length=243, Percent_Identity=28.8065843621399, Blast_Score=105, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43663; Mature: 43663

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQARPLEGMRVVDYSHFLAGPYVGRCLAALGADVIKVERPGGGDAGRQHATVLDARSSG
CCCCCCCCCEEEECHHHHHCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEECCCC
YFLQLNMGKRGVSVNMKEPRGRAFMERLCDSADVFVENYRPGALDKLGLGYEALSARNPG
EEEEEECCCCCCEECCCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHCCCHHHHCCCCCC
LVYCSISAYGHTGPDAHRAGFGLIAEAKSGIMQMVGSPGERPPLLRISLGDMYTGIHAVA
EEEEEEEECCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHH
AINAALLGRVKSGRGQHIDMALYDTLVSMHEYAVQCYTLADVLPEQTGHDMPGSTLYGVF
HHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
RATDGDLVIAAQVDEAWKRFAALIEANGGPPGFGADPRFHDSVGRNAHRREILAVVEPWV
EECCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCC
GARTVARILELLDAIDVPCAKVQRIDEVIADPQIQARGMIVEQEHPRYGTLRLPNLPFRF
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEECCCEEEECCCCCCCEEECCCCCEEE
SGCDTTIREVAPDLGQHNAEIARALGFTAAEIEAMQADGVLYDK
CCCCHHHHHHCHHHCCCHHHHHHHHCCCHHHHHHHHCCCEEECC
>Mature Secondary Structure
MKQARPLEGMRVVDYSHFLAGPYVGRCLAALGADVIKVERPGGGDAGRQHATVLDARSSG
CCCCCCCCCEEEECHHHHHCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEECCCC
YFLQLNMGKRGVSVNMKEPRGRAFMERLCDSADVFVENYRPGALDKLGLGYEALSARNPG
EEEEEECCCCCCEECCCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHCCCHHHHCCCCCC
LVYCSISAYGHTGPDAHRAGFGLIAEAKSGIMQMVGSPGERPPLLRISLGDMYTGIHAVA
EEEEEEEECCCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHH
AINAALLGRVKSGRGQHIDMALYDTLVSMHEYAVQCYTLADVLPEQTGHDMPGSTLYGVF
HHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
RATDGDLVIAAQVDEAWKRFAALIEANGGPPGFGADPRFHDSVGRNAHRREILAVVEPWV
EECCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCC
GARTVARILELLDAIDVPCAKVQRIDEVIADPQIQARGMIVEQEHPRYGTLRLPNLPFRF
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEECCCEEEECCCCCCCEEECCCCCEEE
SGCDTTIREVAPDLGQHNAEIARALGFTAAEIEAMQADGVLYDK
CCCCHHHHHHCHHHCCCHHHHHHHHCCCHHHHHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]