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The map label for this gene is yecS [H]

Identifier: 238024355

GI number: 238024355

Start: 1167977

End: 1168633

Strand: Direct

Name: yecS [H]

Synonym: bglu_2g09480

Alternate gene names: 238024355

Gene position: 1167977-1168633 (Clockwise)

Preceding gene: 238024354

Following gene: 238024356

Centisome position: 41.31

GC content: 59.21

Gene sequence:

>657_bases
ATGCGTTGGAGCGATATCGTCGAATTCGTCCCCATCCTGTTGCAAGGGGCCGGGCTGACCGTTTTTATCACGATCAGTTG
TCTGGTTCTCAGTACGATGCTGGGTCTCGTCTGGGCGCTTCTGAAGATGTCGCGGCACGCGCCGGTCCGGCGCGCGGCAG
CCACGCTGATCAACGTGGTGCGTGGGCTGCCCATGATCGTGCTGCTGTTTTATATCTACTTCGTACTGCCCTCGATCGGG
CTGCAGATGAGCGCCCTGCAGGCGAGCATCGTGGGCTTGGCCTTCGGGTATTCCACCTACGTGGCCGAAATCATTCGGTC
CGGCATCGAATCCGTCGATCCGGGCCAATACGAGGCAGCGCAATCCATCGGCATGGGGCGCGTCAAGACGATGACGCGCG
TGATTCTTCCTCAAGCCATCAAGGTCGCGTTGCCTCCTTACAGCAACACGCTGGTATCGATGCTCAAGGATTCGTCGCTG
GCATCGACGATCACCGTTTCGGAGATGACGCGTCAAGGCTCGCTGATCGCGGCCGCGACTTTCCAGAATCTCGAGGTCTA
CACGCTCGTCGCGATCGGATATCTCGCCATGAGCCTGCCGTTGATGAGCTTGACGAAGGCACTCGAACGGCGCTTCGGCA
AGCACAAGGTGAAGTGA

Upstream 100 bases:

>100_bases
CGCATACTCCGAGTGCCGCTATCGAGGTCATCTGCTCTCGATGGCGGCAGCGCAGACGGCGCCGTTCTCGAAGTGCGGAA
AATTATTAGGAAAGCAAAGC

Downstream 100 bases:

>100_bases
GGCTGCAAATGATCGAGATCAAGAACATACACAAGAGCTTTGGCGACGTGCCCGTGCTCAAGGGCATTACCTTGGGCGTC
AGGGAGGGCGAGGTCGTGTG

Product: ABC polar amino acid family transporter inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MRWSDIVEFVPILLQGAGLTVFITISCLVLSTMLGLVWALLKMSRHAPVRRAAATLINVVRGLPMIVLLFYIYFVLPSIG
LQMSALQASIVGLAFGYSTYVAEIIRSGIESVDPGQYEAAQSIGMGRVKTMTRVILPQAIKVALPPYSNTLVSMLKDSSL
ASTITVSEMTRQGSLIAAATFQNLEVYTLVAIGYLAMSLPLMSLTKALERRFGKHKVK

Sequences:

>Translated_218_residues
MRWSDIVEFVPILLQGAGLTVFITISCLVLSTMLGLVWALLKMSRHAPVRRAAATLINVVRGLPMIVLLFYIYFVLPSIG
LQMSALQASIVGLAFGYSTYVAEIIRSGIESVDPGQYEAAQSIGMGRVKTMTRVILPQAIKVALPPYSNTLVSMLKDSSL
ASTITVSEMTRQGSLIAAATFQNLEVYTLVAIGYLAMSLPLMSLTKALERRFGKHKVK
>Mature_218_residues
MRWSDIVEFVPILLQGAGLTVFITISCLVLSTMLGLVWALLKMSRHAPVRRAAATLINVVRGLPMIVLLFYIYFVLPSIG
LQMSALQASIVGLAFGYSTYVAEIIRSGIESVDPGQYEAAQSIGMGRVKTMTRVILPQAIKVALPPYSNTLVSMLKDSSL
ASTITVSEMTRQGSLIAAATFQNLEVYTLVAIGYLAMSLPLMSLTKALERRFGKHKVK

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=211, Percent_Identity=39.3364928909953, Blast_Score=166, Evalue=8e-43,
Organism=Escherichia coli, GI1787030, Length=211, Percent_Identity=35.0710900473934, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1786873, Length=217, Percent_Identity=29.9539170506912, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI87082239, Length=210, Percent_Identity=31.9047619047619, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1788645, Length=223, Percent_Identity=30.0448430493274, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787087, Length=228, Percent_Identity=27.1929824561404, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1788646, Length=215, Percent_Identity=26.046511627907, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI48994930, Length=118, Percent_Identity=38.135593220339, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1786874, Length=209, Percent_Identity=23.444976076555, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787086, Length=214, Percent_Identity=23.8317757009346, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23743; Mature: 23743

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWSDIVEFVPILLQGAGLTVFITISCLVLSTMLGLVWALLKMSRHAPVRRAAATLINVV
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
RGLPMIVLLFYIYFVLPSIGLQMSALQASIVGLAFGYSTYVAEIIRSGIESVDPGQYEAA
HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
QSIGMGRVKTMTRVILPQAIKVALPPYSNTLVSMLKDSSLASTITVSEMTRQGSLIAAAT
HHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEH
FQNLEVYTLVAIGYLAMSLPLMSLTKALERRFGKHKVK
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRWSDIVEFVPILLQGAGLTVFITISCLVLSTMLGLVWALLKMSRHAPVRRAAATLINVV
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
RGLPMIVLLFYIYFVLPSIGLQMSALQASIVGLAFGYSTYVAEIIRSGIESVDPGQYEAA
HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
QSIGMGRVKTMTRVILPQAIKVALPPYSNTLVSMLKDSSLASTITVSEMTRQGSLIAAAT
HHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEH
FQNLEVYTLVAIGYLAMSLPLMSLTKALERRFGKHKVK
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]