| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is selA [H]
Identifier: 238024285
GI number: 238024285
Start: 1053826
End: 1055289
Strand: Direct
Name: selA [H]
Synonym: bglu_2g08680
Alternate gene names: 238024285
Gene position: 1053826-1055289 (Clockwise)
Preceding gene: 238024284
Following gene: 238024286
Centisome position: 37.27
GC content: 73.98
Gene sequence:
>1464_bases TTGAGCGATCACGGCCCGACCGAACTGAAGGCGCTGCTCGCGCGCGTGCCGTCCGTGGAGCGGATCGTGTCGTCCGACGC GTTACGCCCGCTCATTGGCGACCATGGACGCACGCGCGTGCTCGCTGCCGTGCGCGCCGCGCTCGACGCGTGGCGCGAGC GCGCGCGGCGCGATCCGGCCGGCGTGAGCCCGCCCGACGACGCCGGCATTGCGGCCGAGGTCCGCGCGCGGCTCGCGGCG GTCGACACGAGCGCGCTGAAGCCCGTCTTCAACCTGACCGGCACCGTGCTGCACACCAACCTCGGGCGGGCGCTGCTGCC CGACGAGGCCGTGCGCGACGTGGTGGCCGCGCTGACGCGGCCGATGAATCTCGAATTCGATCTCGCCACCGGCAAGCGCG GCGACCGCGACGACCTGATCGACGACCTGGTCTGCGAGCTGACCGGCGCCGAGGCCGCCACCGTCGTCAACAACAACGCC GCCGCCGTGCTGCTGACGCTGTCCGCGCTCGCCGCGAAGCAAGAGGTGATCGTCTCGCGCGGGGAACTCGTGGAGATCGG CGGCGCGTTCCGGATTCCCGACATCATGAGCCGGGCCGGCGCGCGGCTGCGCGAGGTGGGCACCACCAACCGCACCCATG CGCGCGACTACGCCGAGGCGATCGGCCCGCGCACCGCCCTGCTGATGAAGGTGCACTGCAGCAACTACGCGATCAGCGGC TTCACGAAGGAGGTGCCGATCGAGGCGCTCGCGCCGCTCGGCCGCGAGCGCGGCGTGCCGGTGGCCGTCGATCTCGGCAG CGGCACGCTGGTCGACCTCTCGCAATGGGGGCTGCCGCGCGAGCCCACCGTGCGCGACACCATCGCGGCCGGCGCCGATC TCGTCACGTTCAGCGGCGACAAGCTGCTGGGCGGCCCGCAGGCCGGCCTGATCGTCGGCTCGCGCGAACTCGTCGCGAGG ATCAAGAAGCATCCGCTCAAGCGCGCGCTGCGCGTCGGCAAGCTCACGCTGGCCGCGCTCGAACCCGTGCTGCGGCTCTA CCGCGCGCCCGAATTCCTGCGCGAGCGCCTCACCACGCTGCGTCTGCTCACGCGCCCTCACGCCGAGATCGCGGCCGCGG CCGAACGTCTGCTGCCGGCGTTCCAGCGCGCCGTGGGCCAGGCGTTCGCGGTCGGCGCCGAGCCGATGTTCAGCCAGATC GGCAGCGGCGCGCTGCCGGTGGACCTGCTGCCGAGCCACGGGCTGGTGGTGCGCACCGTGGGCACCAAGCGCAGCGGCCG CGCGCTCGGCCAGCTGGAGGCGCGGCTGCGCGACTGGCCGCGGCCGGTGATCGGCCGCATCGCCGACGATGCGCTGCGGC TCGACCTGCGCTGCCTCGAGGCCGCCGACGAGGCCGCGCTGATCGCGCAGTGCATGGCCGCTGGTGCCGCGGCGCTGGGC GAGCCGGGAGGCGCGCGCGCATGA
Upstream 100 bases:
>100_bases CTCGACCTGCTGATGAACGAAGCCGGCTATCGGCGCGCGTCGCCGAATCCGCTGCTGTGGCCCGAGCTGCCGGCCTCCGA CGCTTGAGCGGAGCACCGAC
Downstream 100 bases:
>100_bases TCGTCGGCACCGCGGGCCACATCGATCACGGCAAGACCACGCTGGTGCGCGCGCTGACCGGCGTGGACACCGACCGGCTG AAGGAGGAGAAGGCGCGCGG
Product: selenocysteine synthase
Products: NA
Alternate protein names: Selenocysteine synthase; Sec synthase; Selenocysteinyl-tRNA(Sec) synthase [H]
Number of amino acids: Translated: 487; Mature: 486
Protein sequence:
>487_residues MSDHGPTELKALLARVPSVERIVSSDALRPLIGDHGRTRVLAAVRAALDAWRERARRDPAGVSPPDDAGIAAEVRARLAA VDTSALKPVFNLTGTVLHTNLGRALLPDEAVRDVVAALTRPMNLEFDLATGKRGDRDDLIDDLVCELTGAEAATVVNNNA AAVLLTLSALAAKQEVIVSRGELVEIGGAFRIPDIMSRAGARLREVGTTNRTHARDYAEAIGPRTALLMKVHCSNYAISG FTKEVPIEALAPLGRERGVPVAVDLGSGTLVDLSQWGLPREPTVRDTIAAGADLVTFSGDKLLGGPQAGLIVGSRELVAR IKKHPLKRALRVGKLTLAALEPVLRLYRAPEFLRERLTTLRLLTRPHAEIAAAAERLLPAFQRAVGQAFAVGAEPMFSQI GSGALPVDLLPSHGLVVRTVGTKRSGRALGQLEARLRDWPRPVIGRIADDALRLDLRCLEAADEAALIAQCMAAGAAALG EPGGARA
Sequences:
>Translated_487_residues MSDHGPTELKALLARVPSVERIVSSDALRPLIGDHGRTRVLAAVRAALDAWRERARRDPAGVSPPDDAGIAAEVRARLAA VDTSALKPVFNLTGTVLHTNLGRALLPDEAVRDVVAALTRPMNLEFDLATGKRGDRDDLIDDLVCELTGAEAATVVNNNA AAVLLTLSALAAKQEVIVSRGELVEIGGAFRIPDIMSRAGARLREVGTTNRTHARDYAEAIGPRTALLMKVHCSNYAISG FTKEVPIEALAPLGRERGVPVAVDLGSGTLVDLSQWGLPREPTVRDTIAAGADLVTFSGDKLLGGPQAGLIVGSRELVAR IKKHPLKRALRVGKLTLAALEPVLRLYRAPEFLRERLTTLRLLTRPHAEIAAAAERLLPAFQRAVGQAFAVGAEPMFSQI GSGALPVDLLPSHGLVVRTVGTKRSGRALGQLEARLRDWPRPVIGRIADDALRLDLRCLEAADEAALIAQCMAAGAAALG EPGGARA >Mature_486_residues SDHGPTELKALLARVPSVERIVSSDALRPLIGDHGRTRVLAAVRAALDAWRERARRDPAGVSPPDDAGIAAEVRARLAAV DTSALKPVFNLTGTVLHTNLGRALLPDEAVRDVVAALTRPMNLEFDLATGKRGDRDDLIDDLVCELTGAEAATVVNNNAA AVLLTLSALAAKQEVIVSRGELVEIGGAFRIPDIMSRAGARLREVGTTNRTHARDYAEAIGPRTALLMKVHCSNYAISGF TKEVPIEALAPLGRERGVPVAVDLGSGTLVDLSQWGLPREPTVRDTIAAGADLVTFSGDKLLGGPQAGLIVGSRELVARI KKHPLKRALRVGKLTLAALEPVLRLYRAPEFLRERLTTLRLLTRPHAEIAAAAERLLPAFQRAVGQAFAVGAEPMFSQIG SGALPVDLLPSHGLVVRTVGTKRSGRALGQLEARLRDWPRPVIGRIADDALRLDLRCLEAADEAALIAQCMAAGAAALGE PGGARA
Specific function: Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis [H]
COG id: COG1921
COG function: function code E; Selenocysteine synthase [seryl-tRNASer selenium transferase]
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the selA family [H]
Homologues:
Organism=Escherichia coli, GI2367248, Length=456, Percent_Identity=55.7017543859649, Blast_Score=432, Evalue=1e-122,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR018319 - InterPro: IPR004534 [H]
Pfam domain/function: PF03841 SelA [H]
EC number: =2.9.1.1 [H]
Molecular weight: Translated: 51609; Mature: 51478
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDHGPTELKALLARVPSVERIVSSDALRPLIGDHGRTRVLAAVRAALDAWRERARRDPA CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC GVSPPDDAGIAAEVRARLAAVDTSALKPVFNLTGTVLHTNLGRALLPDEAVRDVVAALTR CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHCC PMNLEFDLATGKRGDRDDLIDDLVCELTGAEAATVVNNNAAAVLLTLSALAAKQEVIVSR CCCCEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCC GELVEIGGAFRIPDIMSRAGARLREVGTTNRTHARDYAEAIGPRTALLMKVHCSNYAISG CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEEECCCEEECC FTKEVPIEALAPLGRERGVPVAVDLGSGTLVDLSQWGLPREPTVRDTIAAGADLVTFSGD CCCCCCHHHHHCCHHCCCCEEEEECCCCCEEEHHHCCCCCCCCHHHHHHCCCCEEEECCC KLLGGPQAGLIVGSRELVARIKKHPLKRALRVGKLTLAALEPVLRLYRAPEFLRERLTTL CCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH RLLTRPHAEIAAAAERLLPAFQRAVGQAFAVGAEPMFSQIGSGALPVDLLPSHGLVVRTV HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEECCCCCEEEEEC GTKRSGRALGQLEARLRDWPRPVIGRIADDALRLDLRCLEAADEAALIAQCMAAGAAALG CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC EPGGARA CCCCCCC >Mature Secondary Structure SDHGPTELKALLARVPSVERIVSSDALRPLIGDHGRTRVLAAVRAALDAWRERARRDPA CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC GVSPPDDAGIAAEVRARLAAVDTSALKPVFNLTGTVLHTNLGRALLPDEAVRDVVAALTR CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHCC PMNLEFDLATGKRGDRDDLIDDLVCELTGAEAATVVNNNAAAVLLTLSALAAKQEVIVSR CCCCEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCC GELVEIGGAFRIPDIMSRAGARLREVGTTNRTHARDYAEAIGPRTALLMKVHCSNYAISG CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEEECCCEEECC FTKEVPIEALAPLGRERGVPVAVDLGSGTLVDLSQWGLPREPTVRDTIAAGADLVTFSGD CCCCCCHHHHHCCHHCCCCEEEEECCCCCEEEHHHCCCCCCCCHHHHHHCCCCEEEECCC KLLGGPQAGLIVGSRELVARIKKHPLKRALRVGKLTLAALEPVLRLYRAPEFLRERLTTL CCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH RLLTRPHAEIAAAAERLLPAFQRAVGQAFAVGAEPMFSQIGSGALPVDLLPSHGLVVRTV HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEECCCCCEEEEEC GTKRSGRALGQLEARLRDWPRPVIGRIADDALRLDLRCLEAADEAALIAQCMAAGAAALG CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC EPGGARA CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA