| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238024165
Identifier: 238024165
GI number: 238024165
Start: 891621
End: 894263
Strand: Reverse
Name: 238024165
Synonym: bglu_2g07430
Alternate gene names: NA
Gene position: 894263-891621 (Counterclockwise)
Preceding gene: 238024166
Following gene: 238024164
Centisome position: 31.63
GC content: 67.92
Gene sequence:
>2643_bases ATGAGCGACCTGGCGAGCGCCGACGCGCGCAGCTTCTCCGTCAACCGGCTCGCGCCGCCCGAGCCGGCCGTCTACCTGCA CTGCGCGGTGTTCATCGACCGCCACACCGTGCTCGGCGCCGAGACCTTCCGCCTGCAGAGCTTCCAGGGGCAGGAGAGCG TGTCGGAGCCGTTCGAATACCAGCTGGAGCTGGTGGCCAACTCCGACGGCGAGCGCGCGCTGCCGGTGCGCTTCGACGAG CTGATCGGCCGCGCCATCACGGTCGGCATCGGCAAGCAGATCGATCCCGACTGGAGCACCAGCCTGTTCCGCGCCGCGCT CGAGGGCGGCGTCGCGCCGGACGACACGCGGCTGTCGCTGTTCAACGGCATCGTGACGAGCTTCGCGGTGAAGAACCGCG GCACCTACGCCATCACGATGAAGCCGGCGCTGCACCGGCTCGGCCTGACCAACAACTACCGCGTGTTCCATGGCCGCACC GTCTGGGAAATGATCGAGCTGCTGCTCGACGCGCACCACGTCGCCTACGCGCCGTTCCAGCACAGCCAGCGCAACCTCGC CGTGATCCGCCGCCAGGACTGGATGCAGGCCGGCGAGACCGACCTCGAATTCCTCAAGCGGCTGATGAGCAAGGCGCTGC TGCACTTCTACTTCGTGCATTCGGGCAACGGCCACGCGCTGGTGTTCTCCAACACCGCCCAGTATCCCGAGGCGGTGCCG GGCGGCCGGCCGCTGCGCTACACCTACAGCGACGCGCGGGCGCTCGGCATGGAGCAGGAGGACGTCGTCGGCGAATTCAG CATGAAGAAGTCGATGGGCAGCACCGGCGTGCACGGCGTGCTCACGCAGCAGGACGGCGCGTGGCTCGCCAACCCGGTGG TCGAGTTCAACTCGTTCTACGCCGACGACAACCAGGACGCCAACCCGCTGCCGTTCAACCTCTACAAGAGCTACCAGTAC GGCGGCAGCAAGGAGGAGGCGCAGAGCCTGTCGAGCATCACCCGCAGCACGCTCGACGGCAGCCGCCACGAGCTGTCGGG CGCCAGCAACTGCGCGCGCTTGCGCGTCGGCCACCGCTTCAGGCTGACCAGCGGCGCGGGACCCACCAACCCGGTCGAGC CGTTCCTCGAGGACGGCGCGTTCGTGCTGACCGCGGTCCAGCACCAGGCCAGCGCCGACGGCAGCTATCGCAACCAGTTC CAGGCCGGCGACGCGGCCTACCTCATCACGCCCTACTCGATCCAGGCGACCCAGCAGGGCAGCGTGCTGGCCGAGGTGGT GCCGGACCCGGCCGCGCAGGCGCAGACCGCCATCGATTTCGGCGCGCGGCAATCGTTCAGCACCGGCGGCAGCAGCTTCA GCGACGCGCTGAACGACACCGCGTACCCGCAGACCGGCGTGTACGTGCGCTTCTCGACCGCCCCGCGCGACGCGGCCCCG GTGTGGGTCAAGCTCTCCGGCGCGATGCAGACGGCGCCCACGGTGGGCTCGATCGTCGTGGTGGGACGCGCCCAGGACGA ATCGGAGCTGCCGGAGATCCAGAACATCATCCAGACCAACGGCAGCCAGCTGGTGGTGCCGGGCAGCTGGCTCTCCAGCA CGCGCATCGGCAACAACTACTCGACCAGCTACGGCGACAATCAGAGCATCAGCTACGGCGCCCACTCGCCCGTCGATCTC AAGCAGGCGACGCGGATCGTCACCGACGCCTATCGGAGCGGCCGCTTCGACAACACCAGCTTCTCGGAGGGCGCCGGCTA CAGCTTCAGCACCTCGAGCCAGCGCGCGCCGGCCGCGAGCGCCGACAGCGGCGAGCTGTACGGCGCCGACCCGGTGGCGC CCGACATCGTGAGCGCCTCGGAATCGTTCGGCTCGACCTACGGCCGCCAGATCGGCAGCGTCAGCTACAACCATTCGCAC TTCGACAAGTCGATCAGCGACGCCTGGGTGCAGACCGAGCAATCGACGCGCTACACGGGCGACAGCACCAGCGTCAGCGT CGGCCTGAGCAGCACCTCGATGGCCTCGATGGGAACCGCGTCGTCGGTCTCGGTCACCGGCACCTCGATCAGCAGCAACC TGGTCGGCGCCTCGATCTCCGCCAACTTCACCGGCTCGTCGATCAGCACCAGCATGACCGGCAGCGTGATCGACAGCTCG ATCGTCGGCGACACGGTTCGCAGCTCGGTCTCCGGCAACCTGATGGAAGACAGCGTGTCCGGCAACACGGTCCGCAACAC CGTCTCCGGCAACCTGGTCGAAACCAGCGAGTCCGGCAACGTCACGCGCAACTCGCTGTCGGGCGACCTGATCGAGAACA CCGAGTCCGGCGACATCACGCGCGACACCATCGCCGGCGTCGTGACGGAAAACGGCGTGGTGGTGTCGCGCAACGGCGTG AAGACCGAGGGCGCCGTCGAGGAAATGGACGTGAAGGGCTCGCACAACCTCTGCGTGACGGCGGGCAGCACCACCCGCGT CGAGACCTCCGGCGCGACCTCGCAGATCACCACCACCGCCGAGATCACGCTGGTGGAAACCGCCGGCCCCGGCGCGCGCG TGTCGAACAACGACGAAACCCCGCACATCGACAACATCGTCACGCGGATCTACATGATCGAAGCCATGATCATCTTCATG TGA
Upstream 100 bases:
>100_bases GGCTCGGCCAGAGCGCCTGGCTCGCCGGCGCGCCCGCGCATCGCCACGCCACGCGGCCGGTGCGCTTTCTCATCACCACC CGCGATTCCGGGAGCCTCGC
Downstream 100 bases:
>100_bases GCCGCGATGAAAATCATCAAACCCCAATCGCTCGGCCTGCTGCAGAAGCCCTACACCCACCTCGGCCGGCATCGGCTGTC GGTGGCCGTGATCGGCTTCT
Product: Rhs element Vgr protein
Products: NA
Alternate protein names: Type VI Secretion System Vgr Family Protein; Rhs-Family Protein; Type VI Secretion System VgrG Family Protein; Rhs Family Protein; VgrG Protein
Number of amino acids: Translated: 880; Mature: 879
Protein sequence:
>880_residues MSDLASADARSFSVNRLAPPEPAVYLHCAVFIDRHTVLGAETFRLQSFQGQESVSEPFEYQLELVANSDGERALPVRFDE LIGRAITVGIGKQIDPDWSTSLFRAALEGGVAPDDTRLSLFNGIVTSFAVKNRGTYAITMKPALHRLGLTNNYRVFHGRT VWEMIELLLDAHHVAYAPFQHSQRNLAVIRRQDWMQAGETDLEFLKRLMSKALLHFYFVHSGNGHALVFSNTAQYPEAVP GGRPLRYTYSDARALGMEQEDVVGEFSMKKSMGSTGVHGVLTQQDGAWLANPVVEFNSFYADDNQDANPLPFNLYKSYQY GGSKEEAQSLSSITRSTLDGSRHELSGASNCARLRVGHRFRLTSGAGPTNPVEPFLEDGAFVLTAVQHQASADGSYRNQF QAGDAAYLITPYSIQATQQGSVLAEVVPDPAAQAQTAIDFGARQSFSTGGSSFSDALNDTAYPQTGVYVRFSTAPRDAAP VWVKLSGAMQTAPTVGSIVVVGRAQDESELPEIQNIIQTNGSQLVVPGSWLSSTRIGNNYSTSYGDNQSISYGAHSPVDL KQATRIVTDAYRSGRFDNTSFSEGAGYSFSTSSQRAPAASADSGELYGADPVAPDIVSASESFGSTYGRQIGSVSYNHSH FDKSISDAWVQTEQSTRYTGDSTSVSVGLSSTSMASMGTASSVSVTGTSISSNLVGASISANFTGSSISTSMTGSVIDSS IVGDTVRSSVSGNLMEDSVSGNTVRNTVSGNLVETSESGNVTRNSLSGDLIENTESGDITRDTIAGVVTENGVVVSRNGV KTEGAVEEMDVKGSHNLCVTAGSTTRVETSGATSQITTTAEITLVETAGPGARVSNNDETPHIDNIVTRIYMIEAMIIFM
Sequences:
>Translated_880_residues MSDLASADARSFSVNRLAPPEPAVYLHCAVFIDRHTVLGAETFRLQSFQGQESVSEPFEYQLELVANSDGERALPVRFDE LIGRAITVGIGKQIDPDWSTSLFRAALEGGVAPDDTRLSLFNGIVTSFAVKNRGTYAITMKPALHRLGLTNNYRVFHGRT VWEMIELLLDAHHVAYAPFQHSQRNLAVIRRQDWMQAGETDLEFLKRLMSKALLHFYFVHSGNGHALVFSNTAQYPEAVP GGRPLRYTYSDARALGMEQEDVVGEFSMKKSMGSTGVHGVLTQQDGAWLANPVVEFNSFYADDNQDANPLPFNLYKSYQY GGSKEEAQSLSSITRSTLDGSRHELSGASNCARLRVGHRFRLTSGAGPTNPVEPFLEDGAFVLTAVQHQASADGSYRNQF QAGDAAYLITPYSIQATQQGSVLAEVVPDPAAQAQTAIDFGARQSFSTGGSSFSDALNDTAYPQTGVYVRFSTAPRDAAP VWVKLSGAMQTAPTVGSIVVVGRAQDESELPEIQNIIQTNGSQLVVPGSWLSSTRIGNNYSTSYGDNQSISYGAHSPVDL KQATRIVTDAYRSGRFDNTSFSEGAGYSFSTSSQRAPAASADSGELYGADPVAPDIVSASESFGSTYGRQIGSVSYNHSH FDKSISDAWVQTEQSTRYTGDSTSVSVGLSSTSMASMGTASSVSVTGTSISSNLVGASISANFTGSSISTSMTGSVIDSS IVGDTVRSSVSGNLMEDSVSGNTVRNTVSGNLVETSESGNVTRNSLSGDLIENTESGDITRDTIAGVVTENGVVVSRNGV KTEGAVEEMDVKGSHNLCVTAGSTTRVETSGATSQITTTAEITLVETAGPGARVSNNDETPHIDNIVTRIYMIEAMIIFM >Mature_879_residues SDLASADARSFSVNRLAPPEPAVYLHCAVFIDRHTVLGAETFRLQSFQGQESVSEPFEYQLELVANSDGERALPVRFDEL IGRAITVGIGKQIDPDWSTSLFRAALEGGVAPDDTRLSLFNGIVTSFAVKNRGTYAITMKPALHRLGLTNNYRVFHGRTV WEMIELLLDAHHVAYAPFQHSQRNLAVIRRQDWMQAGETDLEFLKRLMSKALLHFYFVHSGNGHALVFSNTAQYPEAVPG GRPLRYTYSDARALGMEQEDVVGEFSMKKSMGSTGVHGVLTQQDGAWLANPVVEFNSFYADDNQDANPLPFNLYKSYQYG GSKEEAQSLSSITRSTLDGSRHELSGASNCARLRVGHRFRLTSGAGPTNPVEPFLEDGAFVLTAVQHQASADGSYRNQFQ AGDAAYLITPYSIQATQQGSVLAEVVPDPAAQAQTAIDFGARQSFSTGGSSFSDALNDTAYPQTGVYVRFSTAPRDAAPV WVKLSGAMQTAPTVGSIVVVGRAQDESELPEIQNIIQTNGSQLVVPGSWLSSTRIGNNYSTSYGDNQSISYGAHSPVDLK QATRIVTDAYRSGRFDNTSFSEGAGYSFSTSSQRAPAASADSGELYGADPVAPDIVSASESFGSTYGRQIGSVSYNHSHF DKSISDAWVQTEQSTRYTGDSTSVSVGLSSTSMASMGTASSVSVTGTSISSNLVGASISANFTGSSISTSMTGSVIDSSI VGDTVRSSVSGNLMEDSVSGNTVRNTVSGNLVETSESGNVTRNSLSGDLIENTESGDITRDTIAGVVTENGVVVSRNGVK TEGAVEEMDVKGSHNLCVTAGSTTRVETSGATSQITTTAEITLVETAGPGARVSNNDETPHIDNIVTRIYMIEAMIIFM
Specific function: Unknown
COG id: COG3501
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 93984; Mature: 93853
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDLASADARSFSVNRLAPPEPAVYLHCAVFIDRHTVLGAETFRLQSFQGQESVSEPFEY CCCCCCCCCCCEECCCCCCCCCCEEEEEEEEEECCEEECCCEEEEECCCCCHHHCCCCEE QLELVANSDGERALPVRFDELIGRAITVGIGKQIDPDWSTSLFRAALEGGVAPDDTRLSL EEEEEECCCCCEECCEEHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCHHHH FNGIVTSFAVKNRGTYAITMKPALHRLGLTNNYRVFHGRTVWEMIELLLDAHHVAYAPFQ HHHHHHHHHCCCCCEEEEEECHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHEECCCC HSQRNLAVIRRQDWMQAGETDLEFLKRLMSKALLHFYFVHSGNGHALVFSNTAQYPEAVP CCCCCEEEEEHHHHHHCCCHHHHHHHHHHHHHHEEEEEEECCCCCEEEEECCCCCCCCCC GGRPLRYTYSDARALGMEQEDVVGEFSMKKSMGSTGVHGVLTQQDGAWLANPVVEFNSFY CCCEEEEEECHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCHHHHHCEE ADDNQDANPLPFNLYKSYQYGGSKEEAQSLSSITRSTLDGSRHELSGASNCARLRVGHRF CCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCEEEEECCEE RLTSGAGPTNPVEPFLEDGAFVLTAVQHQASADGSYRNQFQAGDAAYLITPYSIQATQQG EEECCCCCCCCCCHHHHCCCEEEEEEHHHHCCCCCHHHHCCCCCEEEEEECEEEEECCCC SVLAEVVPDPAAQAQTAIDFGARQSFSTGGSSFSDALNDTAYPQTGVYVRFSTAPRDAAP CEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCC VWVKLSGAMQTAPTVGSIVVVGRAQDESELPEIQNIIQTNGSQLVVPGSWLSSTRIGNNY EEEEECCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCHHHCCCCCCC STSYGDNQSISYGAHSPVDLKQATRIVTDAYRSGRFDNTSFSEGAGYSFSTSSQRAPAAS CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC ADSGELYGADPVAPDIVSASESFGSTYGRQIGSVSYNHSHFDKSISDAWVQTEQSTRYTG CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHCCCCCCEECC DSTSVSVGLSSTSMASMGTASSVSVTGTSISSNLVGASISANFTGSSISTSMTGSVIDSS CCCEEEEECCCCCHHHCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHH IVGDTVRSSVSGNLMEDSVSGNTVRNTVSGNLVETSESGNVTRNSLSGDLIENTESGDIT HHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCHHCCCCCCCCC RDTIAGVVTENGVVVSRNGVKTEGAVEEMDVKGSHNLCVTAGSTTRVETSGATSQITTTA HHHHHEEEECCCEEEECCCCCCCCCHHHCCCCCCCCEEEECCCCEEEECCCCCCEEEEEE EITLVETAGPGARVSNNDETPHIDNIVTRIYMIEAMIIFM EEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SDLASADARSFSVNRLAPPEPAVYLHCAVFIDRHTVLGAETFRLQSFQGQESVSEPFEY CCCCCCCCCCEECCCCCCCCCCEEEEEEEEEECCEEECCCEEEEECCCCCHHHCCCCEE QLELVANSDGERALPVRFDELIGRAITVGIGKQIDPDWSTSLFRAALEGGVAPDDTRLSL EEEEEECCCCCEECCEEHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCHHHH FNGIVTSFAVKNRGTYAITMKPALHRLGLTNNYRVFHGRTVWEMIELLLDAHHVAYAPFQ HHHHHHHHHCCCCCEEEEEECHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHEECCCC HSQRNLAVIRRQDWMQAGETDLEFLKRLMSKALLHFYFVHSGNGHALVFSNTAQYPEAVP CCCCCEEEEEHHHHHHCCCHHHHHHHHHHHHHHEEEEEEECCCCCEEEEECCCCCCCCCC GGRPLRYTYSDARALGMEQEDVVGEFSMKKSMGSTGVHGVLTQQDGAWLANPVVEFNSFY CCCEEEEEECHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCHHHHHCEE ADDNQDANPLPFNLYKSYQYGGSKEEAQSLSSITRSTLDGSRHELSGASNCARLRVGHRF CCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCEEEEECCEE RLTSGAGPTNPVEPFLEDGAFVLTAVQHQASADGSYRNQFQAGDAAYLITPYSIQATQQG EEECCCCCCCCCCHHHHCCCEEEEEEHHHHCCCCCHHHHCCCCCEEEEEECEEEEECCCC SVLAEVVPDPAAQAQTAIDFGARQSFSTGGSSFSDALNDTAYPQTGVYVRFSTAPRDAAP CEEEEECCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCC VWVKLSGAMQTAPTVGSIVVVGRAQDESELPEIQNIIQTNGSQLVVPGSWLSSTRIGNNY EEEEECCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCHHHCCCCCCC STSYGDNQSISYGAHSPVDLKQATRIVTDAYRSGRFDNTSFSEGAGYSFSTSSQRAPAAS CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC ADSGELYGADPVAPDIVSASESFGSTYGRQIGSVSYNHSHFDKSISDAWVQTEQSTRYTG CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHCCCCCCEECC DSTSVSVGLSSTSMASMGTASSVSVTGTSISSNLVGASISANFTGSSISTSMTGSVIDSS CCCEEEEECCCCCHHHCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHH IVGDTVRSSVSGNLMEDSVSGNTVRNTVSGNLVETSESGNVTRNSLSGDLIENTESGDIT HHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCHHCCCCCCCCC RDTIAGVVTENGVVVSRNGVKTEGAVEEMDVKGSHNLCVTAGSTTRVETSGATSQITTTA HHHHHEEEECCCEEEECCCCCCCCCHHHCCCCCCCCEEEECCCCEEEECCCCCCEEEEEE EITLVETAGPGARVSNNDETPHIDNIVTRIYMIEAMIIFM EEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA