| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238024159
Identifier: 238024159
GI number: 238024159
Start: 884957
End: 886405
Strand: Reverse
Name: 238024159
Synonym: bglu_2g07370
Alternate gene names: NA
Gene position: 886405-884957 (Counterclockwise)
Preceding gene: 238024160
Following gene: 238024158
Centisome position: 31.35
GC content: 72.26
Gene sequence:
>1449_bases ATGACGCCCAACGCCCCCCTCCCCGACGCAGTGCAATGGTCGGAAGGCATGATGCTCTCGCCCCAGCATCTGCAACAGAA CGACCGCTACTGGCACGCGCATCTGCGCCATCGCCTGCAGGCCGTGGCGCCGCACTACTGGGGCGTGCTGACGCTGCGCT TCGAGATCGTCAAGGAGATCCTCAGCATCGGCGAGCTCGAATGCATCCTGCCCGACGGGCTGCTGGTCGCGTTCCCCGGC GGCCTGCCGCGCAATCCGCCCGGCAACGTCGAGATCGACGTCGGCGCGGCCTGCCGCAGCGGCGAGGCGCCGGTCAAGGT GTGGTGCGTGGTCAACCCGCGCGGCTCGCATGCCGCCGTGCAGGACAGCCAGGAGCGCCGCTACAACTCGGTGCTCGACG AGCCCAGCGTGGACGAGAACACCGGCGACGGCGCGCTGTCGCTGCCGCGCCTGCAGGTGCGCTTCCAGCTCCACCTCGGC ACGATCTCGCCGGCGCCGCAGAGCGCCGTGCCGCTGCTCGAGTTCGTGCGCGGCGACAACCAGCAGCTGCAGGTCACCGC CTACCACGCGCCGATGCTGCGCATCGAGGCGGCCGACTGCCTCGGCCAGACGAGCCTCTGGCGCCAGCTGCACGCGTTCC ACGACCGCCTGTGGGACAAGCTCTCGCAGCTCGCCGAGCCGGGCAGGTCCGGCGACACCGAGGACACCGCCGGCAACGAG CGCCGCCAGCATCTGGCCGCCGCGCGCCAGATCGGCGCGTGCCTGCCGCCGCTCTCCACGCTGCTGCACGGGCGCACCCA TCCCGAGGCGCTCTACCAGGCGCTCGCGCGGATCGTCGGCGCGGTGTCGGGCATCGGCCCCAACCCGCTGCCGCTGCTGA TGAAGCCGTATCAGCACGACGACTGCCAGCCGCAGTTCCAGCAGGCCATGGCGTTCGTCGCCAACCGGCTGGACACGGTC GATACGCGCTACGAGACGCTCGCGTTCCTGCGCACCGACCAGCACGACGCCAGCCTGCCCGAGGCCTGCTTCGAGCGCCG CCTGCCGGCCGGCATGGGCGACGACCTGATCGTCGAGCTCGAGCCGCGCGAGGCGCAGACGCCCTCGCAACTGCAGGCGT GGCTCGACGAGGCGATGATCGCCGACGCCGCGCTGATGCCGCTGCTGCGCCGCGCGCGGGTGGCCGGCGCGACGGCGCGG CCGTTGCAGCCGCACGAGATCGAGCGCGAGAAGCTGCGCCCGCAGGCCTGCCTGTTCTGGGTGAGGAACCAGCCGCTCGC GCTCGACGACCAGGGCGCGCAGACCGCGTTCGGCGACAGCGCGATGCTGCAGATCGTCGGCCGCAAGAACGACGGCCTGC CGGCCGCGATCGTGCTGTATCGCCGCAAGCAGAAGAACGGCGCGAGCGCCGGCGCCGCGCCGGCGCCGTCCGGGGACCAG CATGCGTGA
Upstream 100 bases:
>100_bases CCCTACCAGAACGTAACGATCTGGCTCACGCCGACGACGGTGCTGTACAAGTCGCAGTGACGCCGCCCGCACCCGACACG AGCCACGGAACCCACAGGCC
Downstream 100 bases:
>100_bases CGCCCCGCACTGGCCGCAGCCGCATCCGGGCACGCCCGATCTGGTGGCGCGCTTCGCCGACTTCTACCAGGAGCTGGCCG CCATCAAGGCCGCCCAGACG
Product: type VI secretion protein
Products: NA
Alternate protein names: T6ss M
Number of amino acids: Translated: 482; Mature: 481
Protein sequence:
>482_residues MTPNAPLPDAVQWSEGMMLSPQHLQQNDRYWHAHLRHRLQAVAPHYWGVLTLRFEIVKEILSIGELECILPDGLLVAFPG GLPRNPPGNVEIDVGAACRSGEAPVKVWCVVNPRGSHAAVQDSQERRYNSVLDEPSVDENTGDGALSLPRLQVRFQLHLG TISPAPQSAVPLLEFVRGDNQQLQVTAYHAPMLRIEAADCLGQTSLWRQLHAFHDRLWDKLSQLAEPGRSGDTEDTAGNE RRQHLAAARQIGACLPPLSTLLHGRTHPEALYQALARIVGAVSGIGPNPLPLLMKPYQHDDCQPQFQQAMAFVANRLDTV DTRYETLAFLRTDQHDASLPEACFERRLPAGMGDDLIVELEPREAQTPSQLQAWLDEAMIADAALMPLLRRARVAGATAR PLQPHEIEREKLRPQACLFWVRNQPLALDDQGAQTAFGDSAMLQIVGRKNDGLPAAIVLYRRKQKNGASAGAAPAPSGDQ HA
Sequences:
>Translated_482_residues MTPNAPLPDAVQWSEGMMLSPQHLQQNDRYWHAHLRHRLQAVAPHYWGVLTLRFEIVKEILSIGELECILPDGLLVAFPG GLPRNPPGNVEIDVGAACRSGEAPVKVWCVVNPRGSHAAVQDSQERRYNSVLDEPSVDENTGDGALSLPRLQVRFQLHLG TISPAPQSAVPLLEFVRGDNQQLQVTAYHAPMLRIEAADCLGQTSLWRQLHAFHDRLWDKLSQLAEPGRSGDTEDTAGNE RRQHLAAARQIGACLPPLSTLLHGRTHPEALYQALARIVGAVSGIGPNPLPLLMKPYQHDDCQPQFQQAMAFVANRLDTV DTRYETLAFLRTDQHDASLPEACFERRLPAGMGDDLIVELEPREAQTPSQLQAWLDEAMIADAALMPLLRRARVAGATAR PLQPHEIEREKLRPQACLFWVRNQPLALDDQGAQTAFGDSAMLQIVGRKNDGLPAAIVLYRRKQKNGASAGAAPAPSGDQ HA >Mature_481_residues TPNAPLPDAVQWSEGMMLSPQHLQQNDRYWHAHLRHRLQAVAPHYWGVLTLRFEIVKEILSIGELECILPDGLLVAFPGG LPRNPPGNVEIDVGAACRSGEAPVKVWCVVNPRGSHAAVQDSQERRYNSVLDEPSVDENTGDGALSLPRLQVRFQLHLGT ISPAPQSAVPLLEFVRGDNQQLQVTAYHAPMLRIEAADCLGQTSLWRQLHAFHDRLWDKLSQLAEPGRSGDTEDTAGNER RQHLAAARQIGACLPPLSTLLHGRTHPEALYQALARIVGAVSGIGPNPLPLLMKPYQHDDCQPQFQQAMAFVANRLDTVD TRYETLAFLRTDQHDASLPEACFERRLPAGMGDDLIVELEPREAQTPSQLQAWLDEAMIADAALMPLLRRARVAGATARP LQPHEIEREKLRPQACLFWVRNQPLALDDQGAQTAFGDSAMLQIVGRKNDGLPAAIVLYRRKQKNGASAGAAPAPSGDQH A
Specific function: Unknown
COG id: COG3522
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53072; Mature: 52941
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPNAPLPDAVQWSEGMMLSPQHLQQNDRYWHAHLRHRLQAVAPHYWGVLTLRFEIVKEI CCCCCCCCCCCCCCCCCEECHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH LSIGELECILPDGLLVAFPGGLPRNPPGNVEIDVGAACRSGEAPVKVWCVVNPRGSHAAV HCCCCEEEECCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCHH QDSQERRYNSVLDEPSVDENTGDGALSLPRLQVRFQLHLGTISPAPQSAVPLLEFVRGDN CCHHHHHHHHHCCCCCCCCCCCCCCEECCEEEEEEEEEECCCCCCCCHHHHHHHHHCCCC QQLQVTAYHAPMLRIEAADCLGQTSLWRQLHAFHDRLWDKLSQLAEPGRSGDTEDTAGNE CEEEEEEECCCEEEEEHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH RRQHLAAARQIGACLPPLSTLLHGRTHPEALYQALARIVGAVSGIGPNPLPLLMKPYQHD HHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCC DCQPQFQQAMAFVANRLDTVDTRYETLAFLRTDQHDASLPEACFERRLPAGMGDDLIVEL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCEEEEE EPREAQTPSQLQAWLDEAMIADAALMPLLRRARVAGATARPLQPHEIEREKLRPQACLFW CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHEEEE VRNQPLALDDQGAQTAFGDSAMLQIVGRKNDGLPAAIVLYRRKQKNGASAGAAPAPSGDQ ECCCCCEECCCCCCCCCCCCEEEEEECCCCCCCCCEEHEEHHHCCCCCCCCCCCCCCCCC HA CC >Mature Secondary Structure TPNAPLPDAVQWSEGMMLSPQHLQQNDRYWHAHLRHRLQAVAPHYWGVLTLRFEIVKEI CCCCCCCCCCCCCCCCEECHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH LSIGELECILPDGLLVAFPGGLPRNPPGNVEIDVGAACRSGEAPVKVWCVVNPRGSHAAV HCCCCEEEECCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCHH QDSQERRYNSVLDEPSVDENTGDGALSLPRLQVRFQLHLGTISPAPQSAVPLLEFVRGDN CCHHHHHHHHHCCCCCCCCCCCCCCEECCEEEEEEEEEECCCCCCCCHHHHHHHHHCCCC QQLQVTAYHAPMLRIEAADCLGQTSLWRQLHAFHDRLWDKLSQLAEPGRSGDTEDTAGNE CEEEEEEECCCEEEEEHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH RRQHLAAARQIGACLPPLSTLLHGRTHPEALYQALARIVGAVSGIGPNPLPLLMKPYQHD HHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCC DCQPQFQQAMAFVANRLDTVDTRYETLAFLRTDQHDASLPEACFERRLPAGMGDDLIVEL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCEEEEE EPREAQTPSQLQAWLDEAMIADAALMPLLRRARVAGATARPLQPHEIEREKLRPQACLFW CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHEEEE VRNQPLALDDQGAQTAFGDSAMLQIVGRKNDGLPAAIVLYRRKQKNGASAGAAPAPSGDQ ECCCCCEECCCCCCCCCCCCEEEEEECCCCCCCCCEEHEEHHHCCCCCCCCCCCCCCCCC HA CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA