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The map label for this gene is nodB [H]

Identifier: 238024110

GI number: 238024110

Start: 808312

End: 808887

Strand: Reverse

Name: nodB [H]

Synonym: bglu_2g06790

Alternate gene names: 238024110

Gene position: 808887-808312 (Counterclockwise)

Preceding gene: 238024114

Following gene: 238024108

Centisome position: 28.61

GC content: 73.44

Gene sequence:

>576_bases
ATGTCATTCCACCTCAGTTTCGACGACGGCCCCGGCCCGTCCACGCCCCACCTGCTCGACGTGCTGCGCGAGGCGTCGTG
CGCGGCGACCTTCTTCGTGCTGGGCTGCCACCTGGAGCAGGCGCCCGAGATGGCGGCCCGCATCGTGCGCGAAGGCCATC
GGCTCGGCAATCACACCTGGACGCATGCCCGGCCCGGCGCGCTGACCGACGCGGCGCTGATCGACGAGATCGCGGCCACC
GACGCGCTGATCCGCGCGGCCCATCGGCTGGCCGAGCTGCCGCCACCCGATGCCATTGCGCTGCGCCTGCCCTACGGCCT
GCAGCCCGACGACCCGCGCGCCGCCGTGCTGGCACGGTTGTCACGCGAGCACACCGGCTGGAGCGCGATCCTCGATGACT
GGCAACACCCGCCGCCGGCCCCGCAGGTGCTGTGCGCCGCGATGCGCGAGCACCTGGCCGAGCAGCACGCGATGCAACGC
GACGTGCTGTTCTGCCTGCACGACGGCTCGCGCCACGGCGAGGCGCGGCCGGCCACGGTCGAGGCGGTGCGGCTGTTCCT
GCAGACGGCGCGCTGA

Upstream 100 bases:

>100_bases
AGTCGGAACTCGGCTGGGGCATCCGCCTGGCAGGGCCACGGCCACCCCGACGAATGGCCGATTGATTTCATGGTTTTGGG
ACCAGGCACGCCGCCGCGCA

Downstream 100 bases:

>100_bases
ACCGAAGGCCGTCGCTCAGCCGATCGGCATCGCGCCATCGAGCAGTTGCCGCCAGCCGCCAAGAAAACCGATCCCCGGGC
CGGGCGTCCACAGCCCACGC

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MSFHLSFDDGPGPSTPHLLDVLREASCAATFFVLGCHLEQAPEMAARIVREGHRLGNHTWTHARPGALTDAALIDEIAAT
DALIRAAHRLAELPPPDAIALRLPYGLQPDDPRAAVLARLSREHTGWSAILDDWQHPPPAPQVLCAAMREHLAEQHAMQR
DVLFCLHDGSRHGEARPATVEAVRLFLQTAR

Sequences:

>Translated_191_residues
MSFHLSFDDGPGPSTPHLLDVLREASCAATFFVLGCHLEQAPEMAARIVREGHRLGNHTWTHARPGALTDAALIDEIAAT
DALIRAAHRLAELPPPDAIALRLPYGLQPDDPRAAVLARLSREHTGWSAILDDWQHPPPAPQVLCAAMREHLAEQHAMQR
DVLFCLHDGSRHGEARPATVEAVRLFLQTAR
>Mature_190_residues
SFHLSFDDGPGPSTPHLLDVLREASCAATFFVLGCHLEQAPEMAARIVREGHRLGNHTWTHARPGALTDAALIDEIAATD
ALIRAAHRLAELPPPDAIALRLPYGLQPDDPRAAVLARLSREHTGWSAILDDWQHPPPAPQVLCAAMREHLAEQHAMQRD
VLFCLHDGSRHGEARPATVEAVRLFLQTAR

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 20961; Mature: 20830

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFHLSFDDGPGPSTPHLLDVLREASCAATFFVLGCHLEQAPEMAARIVREGHRLGNHTW
CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
THARPGALTDAALIDEIAATDALIRAAHRLAELPPPDAIALRLPYGLQPDDPRAAVLARL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHH
SREHTGWSAILDDWQHPPPAPQVLCAAMREHLAEQHAMQRDVLFCLHDGSRHGEARPATV
HHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHH
EAVRLFLQTAR
HHHHHHHHHCC
>Mature Secondary Structure 
SFHLSFDDGPGPSTPHLLDVLREASCAATFFVLGCHLEQAPEMAARIVREGHRLGNHTW
EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
THARPGALTDAALIDEIAATDALIRAAHRLAELPPPDAIALRLPYGLQPDDPRAAVLARL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHH
SREHTGWSAILDDWQHPPPAPQVLCAAMREHLAEQHAMQRDVLFCLHDGSRHGEARPATV
HHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCHHH
EAVRLFLQTAR
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3960737 [H]