| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is dadA [H]
Identifier: 238024057
GI number: 238024057
Start: 741855
End: 743126
Strand: Reverse
Name: dadA [H]
Synonym: bglu_2g06180
Alternate gene names: 238024057
Gene position: 743126-741855 (Counterclockwise)
Preceding gene: 238024058
Following gene: 238024056
Centisome position: 26.28
GC content: 73.98
Gene sequence:
>1272_bases ATGGATTTCGACGTCATCGTCCTCGGCGCCGGCATCGTCGGCGTCAGCGTTGCCGTGCATCTTCAGGATCGCGGCCGGCG CGTCGCGCTCGTCGATCGCCAGGCGCCCGGGCTCGGCACGAGCTTCGGCAACGCGGGGCTGATCGAGCGTTCGTCGGTCA TGCCCTACGCGTTCCCGCGCAGCCCGCTCACGCTGCTGCGCTACGCGGCCAATCAGGCTACCGCGATGTACTGGCATCCG CCCTCGCTGCCCGGCTTCGCGCCATGGCTGCTGCGCTTCTGGCACGAATCCGCGCCGGCACGCCACGCCGCGGCGGCACG CGACATGCGCGCGCTGATCGAGCGCAGCGTGATCGAGCACGACGCGCTCACGGCACGCAGCGCCGAGGCCGCCGCCCTGG TGCGCGCGAGCGGCTGGATCGAGGCGTTCCGTTCGCCGCGCGCATTCGAGCGGGGCGCCGCGCAGGCAGCCGCGCTGGCC CGCTCGCACGGCCTGCGTTACGCGGCGCTCGACGGCGCCGCGCTGCGCGCGCAGCAGCCCTCGCTGCGCGCGGGCTTCGC GGGCGGCATCCACTGGCTCGATCCGAAGGCCGTGTCGAACCCGGGCGCGCTGGTCGGTGCCTACGCCGCGTTGTGCCGCC AACTGGGTGGCACGCTGCTCAGCGGCGACGCGACCACGCTGGCGCCGCTCGGCGACGCTCAGGGCAGCCGCCGCGGGTGG TGCGTGCAGACCACCGACGGCGAGGCGGTCGCACGCGACGTCGTGATCGCGCTCGGTCCGTGGTCCGACACCGTGTTCGC ACGCTTCGGCTACCGCATTCCGCTGCGCGACAAGCGCGGCTATCACATGCACTACGCGCCGCCGGCCGGCGAGCCGGGGC TCTCGGCGCCCGTCGTCGACATCGAGCAGGGCTACGTGATCGCGCCGATGCAGCGCGGCCTGCGGCTGACCACCGGCGTC GAACTCGCCGCGCGCTCGCTGCCGCCCACCGGCATCCAACTCGCGCGCGCCGAGCGCATCGCGCGGCCCACTTTCGGTCT CGGCGAGCGGCTCGATCCGGCGCCGTGGCTGGGCATGCGGCCCTGCACGCCCGACATGCGCCCGGTGCTTGGCGCCGCGC CGCGGCACCCGGGCATGTGGTTCGCGTTCGGCCATAATCACCACGGCCTGACGCTGGGCCCGATCACGGGGCGACTGCTC GCGCAGGCGATCTGCGGCGAGCCTCCCGACATCGATCTCGCGCCGTTCGACGCGCGCCGTTTCGAGCGCTGA
Upstream 100 bases:
>100_bases CACTCGAACGGCACCACGGCCGCTCCCCATCCCCGCCCTCCTGTTTCGCCCGCCGCGCGAATCGGCGAGAATCGCGTGTC CACTCCCGCCCCTCACGCCC
Downstream 100 bases:
>100_bases GCACCACGCCCGCGCGAAACCCGCGCAAGGCCTGCCGGCACCGGCCGGCTACCCGGGCGAGCGGCCTCGAGCACGGCCCC GCCGCCGAATGCCGATGCAA
Product: D-amino acid dehydrogenase small subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 423; Mature: 423
Protein sequence:
>423_residues MDFDVIVLGAGIVGVSVAVHLQDRGRRVALVDRQAPGLGTSFGNAGLIERSSVMPYAFPRSPLTLLRYAANQATAMYWHP PSLPGFAPWLLRFWHESAPARHAAAARDMRALIERSVIEHDALTARSAEAAALVRASGWIEAFRSPRAFERGAAQAAALA RSHGLRYAALDGAALRAQQPSLRAGFAGGIHWLDPKAVSNPGALVGAYAALCRQLGGTLLSGDATTLAPLGDAQGSRRGW CVQTTDGEAVARDVVIALGPWSDTVFARFGYRIPLRDKRGYHMHYAPPAGEPGLSAPVVDIEQGYVIAPMQRGLRLTTGV ELAARSLPPTGIQLARAERIARPTFGLGERLDPAPWLGMRPCTPDMRPVLGAAPRHPGMWFAFGHNHHGLTLGPITGRLL AQAICGEPPDIDLAPFDARRFER
Sequences:
>Translated_423_residues MDFDVIVLGAGIVGVSVAVHLQDRGRRVALVDRQAPGLGTSFGNAGLIERSSVMPYAFPRSPLTLLRYAANQATAMYWHP PSLPGFAPWLLRFWHESAPARHAAAARDMRALIERSVIEHDALTARSAEAAALVRASGWIEAFRSPRAFERGAAQAAALA RSHGLRYAALDGAALRAQQPSLRAGFAGGIHWLDPKAVSNPGALVGAYAALCRQLGGTLLSGDATTLAPLGDAQGSRRGW CVQTTDGEAVARDVVIALGPWSDTVFARFGYRIPLRDKRGYHMHYAPPAGEPGLSAPVVDIEQGYVIAPMQRGLRLTTGV ELAARSLPPTGIQLARAERIARPTFGLGERLDPAPWLGMRPCTPDMRPVLGAAPRHPGMWFAFGHNHHGLTLGPITGRLL AQAICGEPPDIDLAPFDARRFER >Mature_423_residues MDFDVIVLGAGIVGVSVAVHLQDRGRRVALVDRQAPGLGTSFGNAGLIERSSVMPYAFPRSPLTLLRYAANQATAMYWHP PSLPGFAPWLLRFWHESAPARHAAAARDMRALIERSVIEHDALTARSAEAAALVRASGWIEAFRSPRAFERGAAQAAALA RSHGLRYAALDGAALRAQQPSLRAGFAGGIHWLDPKAVSNPGALVGAYAALCRQLGGTLLSGDATTLAPLGDAQGSRRGW CVQTTDGEAVARDVVIALGPWSDTVFARFGYRIPLRDKRGYHMHYAPPAGEPGLSAPVVDIEQGYVIAPMQRGLRLTTGV ELAARSLPPTGIQLARAERIARPTFGLGERLDPAPWLGMRPCTPDMRPVLGAAPRHPGMWFAFGHNHHGLTLGPITGRLL AQAICGEPPDIDLAPFDARRFER
Specific function: Oxidative deamination of D-amino acids [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Inner Membrane-Bound [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DadA oxidoreductase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023080 - InterPro: IPR006076 [H]
Pfam domain/function: PF01266 DAO [H]
EC number: =1.4.99.1 [H]
Molecular weight: Translated: 45336; Mature: 45336
Theoretical pI: Translated: 10.12; Mature: 10.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDFDVIVLGAGIVGVSVAVHLQDRGRRVALVDRQAPGLGTSFGNAGLIERSSVMPYAFPR CCCEEEEEECCEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEECCCCCCEECCC SPLTLLRYAANQATAMYWHPPSLPGFAPWLLRFWHESAPARHAAAARDMRALIERSVIEH CHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH DALTARSAEAAALVRASGWIEAFRSPRAFERGAAQAAALARSHGLRYAALDGAALRAQQP HHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCC SLRAGFAGGIHWLDPKAVSNPGALVGAYAALCRQLGGTLLSGDATTLAPLGDAQGSRRGW CCCCCCCCCEEEECCHHCCCCCHHHHHHHHHHHHHCCEEECCCCCEEEECCCCCCCCCCC CVQTTDGEAVARDVVIALGPWSDTVFARFGYRIPLRDKRGYHMHYAPPAGEPGLSAPVVD EEECCCCCCEEEEEEEEECCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCCCCCCCEEE IEQGYVIAPMQRGLRLTTGVELAARSLPPTGIQLARAERIARPTFGLGERLDPAPWLGMR CCCCEEECHHHCCEEEECCHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC PCTPDMRPVLGAAPRHPGMWFAFGHNHHGLTLGPITGRLLAQAICGEPPDIDLAPFDARR CCCCCCHHHHCCCCCCCCEEEEECCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCHHH FER CCC >Mature Secondary Structure MDFDVIVLGAGIVGVSVAVHLQDRGRRVALVDRQAPGLGTSFGNAGLIERSSVMPYAFPR CCCEEEEEECCEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEECCCCCCEECCC SPLTLLRYAANQATAMYWHPPSLPGFAPWLLRFWHESAPARHAAAARDMRALIERSVIEH CHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH DALTARSAEAAALVRASGWIEAFRSPRAFERGAAQAAALARSHGLRYAALDGAALRAQQP HHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCC SLRAGFAGGIHWLDPKAVSNPGALVGAYAALCRQLGGTLLSGDATTLAPLGDAQGSRRGW CCCCCCCCCEEEECCHHCCCCCHHHHHHHHHHHHHCCEEECCCCCEEEECCCCCCCCCCC CVQTTDGEAVARDVVIALGPWSDTVFARFGYRIPLRDKRGYHMHYAPPAGEPGLSAPVVD EEECCCCCCEEEEEEEEECCCCCHHHHHCCCEECCCCCCCCEEEECCCCCCCCCCCCEEE IEQGYVIAPMQRGLRLTTGVELAARSLPPTGIQLARAERIARPTFGLGERLDPAPWLGMR CCCCEEECHHHCCEEEECCHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC PCTPDMRPVLGAAPRHPGMWFAFGHNHHGLTLGPITGRLLAQAICGEPPDIDLAPFDARR CCCCCCHHHHCCCCCCCCEEEEECCCCCCEEECCHHHHHHHHHHCCCCCCCCCCCCCHHH FER CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA