| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is yyaJ [H]
Identifier: 238023910
GI number: 238023910
Start: 547654
End: 549069
Strand: Direct
Name: yyaJ [H]
Synonym: bglu_2g04520
Alternate gene names: 238023910
Gene position: 547654-549069 (Clockwise)
Preceding gene: 238023889
Following gene: 238023912
Centisome position: 19.37
GC content: 70.55
Gene sequence:
>1416_bases ATGGCCACCGAACACCGACACGCGACCGTCGCCGACGCCGCGCCGCCCGATGCCGGCGCGATCGCGGCGCGCCTCGACCG CCTGCCGCCGACCCGCACCGTCTGGAAGCTCGTGGTGCTGCTGAGCCTCGGCTTCTTCTTCGAACTCTACGATCTGCTCT ACAGCGGCTACGTGGCGCCGGGCCTCGTGAAGGGCGGCATCCTGAGCCCGGCCACGCACGGGCTGTTCGGCACCACCGGC GTGGCGAGCTTCATCGCCGCGCTGTTCGCGGGGCTGTTCATCGGCACGCTCGCCTGCGGCTTCCTCGCCGACCGTTTCGG GCGGCGCGGCGTGTTCACCTGGTCGCTGCTCTGGTACACGGCGGCCAACCTCGTGATGGCGTTTCAGGACACGGCGGGCG GCCTCAACTTCTGGCGCTTCATGGTGGGCCTCGGGCTCGGCGTCGAGATGGTGACCATCGGCACCTACATCTCGGAGCTG GTGCCCAAGCAGATCCGCGGCCGCGCGTTCGCCTGCGAGCAGGCGGTGGGCTTCTGCGCGGTGCCGGTGGTCGCGTTCCT CGCCTACCTGCTGGTGCCGCGCGCGCCGTTCGGCCTGGACGGCTGGCGCTGGGTGGTGCTGATCGGCGCGCACGGCGCGA TCTTCGTCTGGTGGATTCGCCGCGCGCTGCCGGAGAGCCCGCGCTGGCTCGCGCAGCAGGGCCGGCTCGACGAGGCGGAT CGCGTGATGCGCGCGCTCGAGGCGCAGGTGGCCGCCGAATACGGCCGGCCGCTGCCGCCGCCGGGGCCGGCCGAGCCGGT GGCGGCGCGCGGCCGCTTCGCCGACATGTGGGTGGCGCCGTACCGCAAGCGCACCGTGATGCTGACGGTCTTCAACGTGT TCCAGACGGTCGGCTTCTACGGCTTTGCGAACTGGGTGCCGACGCTGCTGATCAAGCAGGGCATCACCATCACCACCAGC CTGATGTACTCGGGGGTGATCGCGCTGGCCGCGCCGGTCGGCCCGCTGATCGGCCTCGCGATCGGCGACCGCTTCGAGCG CAAGAGCGTGATCGTGGCGATGGCGGGCGCGGCGATCGTCTGCGGGCTGGCGTTCAGCCGCAGCGGTTCGGCCGCGCCGC TGGTGCTGCTCGGCATCGGCCTCACGCTCGCCAACAACATCATGTCGTACAGCTTCCACGCCTATCAGGCCGAGCTGTTT CCCACCGCGATCCGCGCGCGCGCGATCGGCTTCGTCTATTCGTGGAGCCGCTTCTCGGCGATCTTCACGTCGTTCGTGAT CGCCGCGGTGCTGAACGGCTTCGGCACGGCGGGCGTGTTCGCGTTCATCTCGGCCGCGATGCTGATCGTGATGGCGTCGA TCGGGCTGATGGGGCCGCGCACGCGCGGCATCGCGCTGGAAAGGATCTCGCACTGA
Upstream 100 bases:
>100_bases GGCCGGCCCGGTACAATGCGCGACGCACCGGCCGCGCTGCCACGCGGCGGCCGGCGCGCGACGACAGGACCTCACGACAA GACCGATGGAGACGACCGGC
Downstream 100 bases:
>100_bases AAGCGGGCGGGCGCCGCCCGCTGCCTTCGCGCGGTTTCGCTTCGCCAACGACGACGCGCCCGGGGCCAGCCCCGGGCGCG TCGTCGTTTGCCGCCGCATT
Product: major facilitator family transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 471; Mature: 470
Protein sequence:
>471_residues MATEHRHATVADAAPPDAGAIAARLDRLPPTRTVWKLVVLLSLGFFFELYDLLYSGYVAPGLVKGGILSPATHGLFGTTG VASFIAALFAGLFIGTLACGFLADRFGRRGVFTWSLLWYTAANLVMAFQDTAGGLNFWRFMVGLGLGVEMVTIGTYISEL VPKQIRGRAFACEQAVGFCAVPVVAFLAYLLVPRAPFGLDGWRWVVLIGAHGAIFVWWIRRALPESPRWLAQQGRLDEAD RVMRALEAQVAAEYGRPLPPPGPAEPVAARGRFADMWVAPYRKRTVMLTVFNVFQTVGFYGFANWVPTLLIKQGITITTS LMYSGVIALAAPVGPLIGLAIGDRFERKSVIVAMAGAAIVCGLAFSRSGSAAPLVLLGIGLTLANNIMSYSFHAYQAELF PTAIRARAIGFVYSWSRFSAIFTSFVIAAVLNGFGTAGVFAFISAAMLIVMASIGLMGPRTRGIALERISH
Sequences:
>Translated_471_residues MATEHRHATVADAAPPDAGAIAARLDRLPPTRTVWKLVVLLSLGFFFELYDLLYSGYVAPGLVKGGILSPATHGLFGTTG VASFIAALFAGLFIGTLACGFLADRFGRRGVFTWSLLWYTAANLVMAFQDTAGGLNFWRFMVGLGLGVEMVTIGTYISEL VPKQIRGRAFACEQAVGFCAVPVVAFLAYLLVPRAPFGLDGWRWVVLIGAHGAIFVWWIRRALPESPRWLAQQGRLDEAD RVMRALEAQVAAEYGRPLPPPGPAEPVAARGRFADMWVAPYRKRTVMLTVFNVFQTVGFYGFANWVPTLLIKQGITITTS LMYSGVIALAAPVGPLIGLAIGDRFERKSVIVAMAGAAIVCGLAFSRSGSAAPLVLLGIGLTLANNIMSYSFHAYQAELF PTAIRARAIGFVYSWSRFSAIFTSFVIAAVLNGFGTAGVFAFISAAMLIVMASIGLMGPRTRGIALERISH >Mature_470_residues ATEHRHATVADAAPPDAGAIAARLDRLPPTRTVWKLVVLLSLGFFFELYDLLYSGYVAPGLVKGGILSPATHGLFGTTGV ASFIAALFAGLFIGTLACGFLADRFGRRGVFTWSLLWYTAANLVMAFQDTAGGLNFWRFMVGLGLGVEMVTIGTYISELV PKQIRGRAFACEQAVGFCAVPVVAFLAYLLVPRAPFGLDGWRWVVLIGAHGAIFVWWIRRALPESPRWLAQQGRLDEADR VMRALEAQVAAEYGRPLPPPGPAEPVAARGRFADMWVAPYRKRTVMLTVFNVFQTVGFYGFANWVPTLLIKQGITITTSL MYSGVIALAAPVGPLIGLAIGDRFERKSVIVAMAGAAIVCGLAFSRSGSAAPLVLLGIGLTLANNIMSYSFHAYQAELFP TAIRARAIGFVYSWSRFSAIFTSFVIAAVLNGFGTAGVFAFISAAMLIVMASIGLMGPRTRGIALERISH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Homo sapiens, GI166064021, Length=393, Percent_Identity=26.7175572519084, Blast_Score=87, Evalue=4e-17, Organism=Homo sapiens, GI4506999, Length=402, Percent_Identity=26.6169154228856, Blast_Score=83, Evalue=6e-16, Organism=Homo sapiens, GI302148518, Length=364, Percent_Identity=25.5494505494505, Blast_Score=79, Evalue=1e-14, Organism=Homo sapiens, GI213021148, Length=424, Percent_Identity=25.7075471698113, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI203098995, Length=353, Percent_Identity=24.929178470255, Blast_Score=73, Evalue=5e-13, Organism=Homo sapiens, GI24308167, Length=465, Percent_Identity=22.7956989247312, Blast_Score=73, Evalue=6e-13, Organism=Homo sapiens, GI4507005, Length=359, Percent_Identity=25.0696378830084, Blast_Score=70, Evalue=4e-12, Organism=Homo sapiens, GI23510410, Length=338, Percent_Identity=27.5147928994083, Blast_Score=69, Evalue=1e-11, Organism=Homo sapiens, GI296080734, Length=358, Percent_Identity=25.6983240223464, Blast_Score=67, Evalue=5e-11, Organism=Homo sapiens, GI296080721, Length=358, Percent_Identity=25.6983240223464, Blast_Score=66, Evalue=6e-11, Organism=Homo sapiens, GI296080719, Length=358, Percent_Identity=25.6983240223464, Blast_Score=66, Evalue=7e-11, Organism=Homo sapiens, GI24497499, Length=358, Percent_Identity=25.6983240223464, Blast_Score=66, Evalue=7e-11, Organism=Escherichia coli, GI1788068, Length=467, Percent_Identity=29.1220556745182, Blast_Score=166, Evalue=4e-42, Organism=Escherichia coli, GI1788074, Length=455, Percent_Identity=29.2307692307692, Blast_Score=159, Evalue=5e-40, Organism=Escherichia coli, GI87082159, Length=418, Percent_Identity=26.3157894736842, Blast_Score=111, Evalue=1e-25, Organism=Escherichia coli, GI1786229, Length=407, Percent_Identity=23.8329238329238, Blast_Score=85, Evalue=1e-17, Organism=Escherichia coli, GI1789207, Length=404, Percent_Identity=23.5148514851485, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI1790463, Length=430, Percent_Identity=23.2558139534884, Blast_Score=69, Evalue=8e-13, Organism=Escherichia coli, GI87082231, Length=164, Percent_Identity=32.9268292682927, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1789312, Length=403, Percent_Identity=23.8213399503722, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI87082404, Length=444, Percent_Identity=22.5225225225225, Blast_Score=66, Evalue=6e-12, Organism=Caenorhabditis elegans, GI25145172, Length=399, Percent_Identity=23.8095238095238, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24640198, Length=435, Percent_Identity=23.448275862069, Blast_Score=71, Evalue=2e-12, Organism=Drosophila melanogaster, GI24640196, Length=435, Percent_Identity=23.448275862069, Blast_Score=71, Evalue=2e-12, Organism=Drosophila melanogaster, GI24640200, Length=435, Percent_Identity=23.448275862069, Blast_Score=71, Evalue=2e-12, Organism=Drosophila melanogaster, GI21355657, Length=385, Percent_Identity=25.7142857142857, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI19922616, Length=400, Percent_Identity=23, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR016196 - InterPro: IPR005828 [H]
Pfam domain/function: PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 50671; Mature: 50540
Theoretical pI: Translated: 10.25; Mature: 10.25
Prosite motif: PS50850 MFS ; PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATEHRHATVADAAPPDAGAIAARLDRLPPTRTVWKLVVLLSLGFFFELYDLLYSGYVAP CCCCCCCCEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC GLVKGGILSPATHGLFGTTGVASFIAALFAGLFIGTLACGFLADRFGRRGVFTWSLLWYT HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH AANLVMAFQDTAGGLNFWRFMVGLGLGVEMVTIGTYISELVPKQIRGRAFACEQAVGFCA HHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH VPVVAFLAYLLVPRAPFGLDGWRWVVLIGAHGAIFVWWIRRALPESPRWLAQQGRLDEAD HHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCHHHHHCCCCCHHH RVMRALEAQVAAEYGRPLPPPGPAEPVAARGRFADMWVAPYRKRTVMLTVFNVFQTVGFY HHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHH GFANWVPTLLIKQGITITTSLMYSGVIALAAPVGPLIGLAIGDRFERKSVIVAMAGAAIV HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCHHEEEEHHHHHH CGLAFSRSGSAAPLVLLGIGLTLANNIMSYSFHAYQAELFPTAIRARAIGFVYSWSRFSA HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IFTSFVIAAVLNGFGTAGVFAFISAAMLIVMASIGLMGPRTRGIALERISH HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCC >Mature Secondary Structure ATEHRHATVADAAPPDAGAIAARLDRLPPTRTVWKLVVLLSLGFFFELYDLLYSGYVAP CCCCCCCEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC GLVKGGILSPATHGLFGTTGVASFIAALFAGLFIGTLACGFLADRFGRRGVFTWSLLWYT HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH AANLVMAFQDTAGGLNFWRFMVGLGLGVEMVTIGTYISELVPKQIRGRAFACEQAVGFCA HHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH VPVVAFLAYLLVPRAPFGLDGWRWVVLIGAHGAIFVWWIRRALPESPRWLAQQGRLDEAD HHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCHHHHHCCCCCHHH RVMRALEAQVAAEYGRPLPPPGPAEPVAARGRFADMWVAPYRKRTVMLTVFNVFQTVGFY HHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHH GFANWVPTLLIKQGITITTSLMYSGVIALAAPVGPLIGLAIGDRFERKSVIVAMAGAAIV HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCHHEEEEHHHHHH CGLAFSRSGSAAPLVLLGIGLTLANNIMSYSFHAYQAELFPTAIRARAIGFVYSWSRFSA HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IFTSFVIAAVLNGFGTAGVFAFISAAMLIVMASIGLMGPRTRGIALERISH HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7584024; 8011666; 9384377 [H]