| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is ytfT [H]
Identifier: 238023905
GI number: 238023905
Start: 537488
End: 538528
Strand: Reverse
Name: ytfT [H]
Synonym: bglu_2g04450
Alternate gene names: 238023905
Gene position: 538528-537488 (Counterclockwise)
Preceding gene: 238023906
Following gene: 238023904
Centisome position: 19.05
GC content: 69.07
Gene sequence:
>1041_bases ATGAAACGCATTCTCGGGCGGCTCGACCACCCGCTCGTCTGGCCGGCGCTGACGCTGGCACTTCTGCTCGCCCTGGACGT CGTCTATCGGCCCAGCTTCCTGGCGGTGACGATGCTCGACGGCCATCTGTTCGGCGCGCCGATCGACATCCTGAACCGCG CGGCGCCGCTCGTCATCGTGTCGCTCGGCATGACGCTCGTGATCGCCACGCGCGGCATCGACATCTCGGTGGGCGCGATC GTCGCCATCGCCGGCGCGACCGCGGCGGTGATCCTGCAGGCGGACCCGTCCCACCTCGCCCAGGCGCTCATCGCGGCGGC CGGCGTGGGGCTGCTGGCAGGCTTCTGGAACGGCTTGCTGGTGGCCTTCGTCGGCATGCAGCCGATCATCGCCACGCTCA TCCTGATGGTGGCCGGGCGGGGCGTGGCGCAACTGCTCACCGACGGCCAGATCATTCCGATCGGCGTCAGCGGCTATCTG CGGCTCGGCGACGGCTATCTCGCGACGATCCCGTGTTCCGTCTGGATCGCGGCCGCCGTGGTGACGCTCTCGGCGCTGCT CGTCAATCGCACGGCGCTCGGCCTCTTCATCCGCGCCATCGGCGTGAACCCGGTGGCGACGCGTCTGGTCGGCCTGCGAT CCGGCATGATCGTGTTCAGCGTCTATGCGTTCTCGGGGCTCACGGCGGCCATCGCCGGCATCATCGCCAGCTCGAACGTG CGCAGCGCGGACGGCAACAACGCCGGCCTGCTGCTCGAGCTCGACGCGATCCTGGCCGTGACGCTCGGCGGCACGTCGCT GATGGGCGGCCGCTTCAGCATGGCAGGCACCGTGCTCGGCGCACTCACCATCCAGACCCTGACGTACACCACCTACTCGA TCGGCGTGCCGCCCGAGGCGACGCTGGTCGTGAAGGCCGTGGTCGTGATCCTGGTCAGCGTGATCCAGTCCGACGCCGCG CGAGGGCTGCTGATGCGGCCGATCCGAAAAGCGCTTCATGGCGCGCGCGCGCGCCTCATCAACGGTTCGACGACATCATG A
Upstream 100 bases:
>100_bases ATCGGATCGCGGTGCTGCGCGACCGGCACAAGGTGGCCGAGGTGACGGGCGAATCGCTGTCGGAGGACGAGGTCTATCGG TTCATCGCAGGAGGCCAGTC
Downstream 100 bases:
>100_bases AAACGTTGACTCGCTACCTGGGCGATCCCCGTACCCTGCCGATCGTCGTGACGATCGTGCTGTTCGCCGCGCTGTTCGGC TTCGGCTCCGTGATGTACAC
Product: Monosaccharide-transporting ATPase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 346; Mature: 346
Protein sequence:
>346_residues MKRILGRLDHPLVWPALTLALLLALDVVYRPSFLAVTMLDGHLFGAPIDILNRAAPLVIVSLGMTLVIATRGIDISVGAI VAIAGATAAVILQADPSHLAQALIAAAGVGLLAGFWNGLLVAFVGMQPIIATLILMVAGRGVAQLLTDGQIIPIGVSGYL RLGDGYLATIPCSVWIAAAVVTLSALLVNRTALGLFIRAIGVNPVATRLVGLRSGMIVFSVYAFSGLTAAIAGIIASSNV RSADGNNAGLLLELDAILAVTLGGTSLMGGRFSMAGTVLGALTIQTLTYTTYSIGVPPEATLVVKAVVVILVSVIQSDAA RGLLMRPIRKALHGARARLINGSTTS
Sequences:
>Translated_346_residues MKRILGRLDHPLVWPALTLALLLALDVVYRPSFLAVTMLDGHLFGAPIDILNRAAPLVIVSLGMTLVIATRGIDISVGAI VAIAGATAAVILQADPSHLAQALIAAAGVGLLAGFWNGLLVAFVGMQPIIATLILMVAGRGVAQLLTDGQIIPIGVSGYL RLGDGYLATIPCSVWIAAAVVTLSALLVNRTALGLFIRAIGVNPVATRLVGLRSGMIVFSVYAFSGLTAAIAGIIASSNV RSADGNNAGLLLELDAILAVTLGGTSLMGGRFSMAGTVLGALTIQTLTYTTYSIGVPPEATLVVKAVVVILVSVIQSDAA RGLLMRPIRKALHGARARLINGSTTS >Mature_346_residues MKRILGRLDHPLVWPALTLALLLALDVVYRPSFLAVTMLDGHLFGAPIDILNRAAPLVIVSLGMTLVIATRGIDISVGAI VAIAGATAAVILQADPSHLAQALIAAAGVGLLAGFWNGLLVAFVGMQPIIATLILMVAGRGVAQLLTDGQIIPIGVSGYL RLGDGYLATIPCSVWIAAAVVTLSALLVNRTALGLFIRAIGVNPVATRLVGLRSGMIVFSVYAFSGLTAAIAGIIASSNV RSADGNNAGLLLELDAILAVTLGGTSLMGGRFSMAGTVLGALTIQTLTYTTYSIGVPPEATLVVKAVVVILVSVIQSDAA RGLLMRPIRKALHGARARLINGSTTS
Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]
Homologues:
Organism=Escherichia coli, GI145693214, Length=288, Percent_Identity=54.5138888888889, Blast_Score=237, Evalue=7e-64, Organism=Escherichia coli, GI1790191, Length=304, Percent_Identity=36.1842105263158, Blast_Score=128, Evalue=5e-31, Organism=Escherichia coli, GI145693152, Length=255, Percent_Identity=32.5490196078431, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1788896, Length=272, Percent_Identity=31.25, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1788471, Length=285, Percent_Identity=30.8771929824561, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1787793, Length=285, Percent_Identity=32.6315789473684, Blast_Score=82, Evalue=7e-17, Organism=Escherichia coli, GI1789992, Length=136, Percent_Identity=39.7058823529412, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1790524, Length=240, Percent_Identity=28.75, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI87082395, Length=258, Percent_Identity=33.3333333333333, Blast_Score=71, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001851 [H]
Pfam domain/function: PF02653 BPD_transp_2 [H]
EC number: NA
Molecular weight: Translated: 35462; Mature: 35462
Theoretical pI: Translated: 10.62; Mature: 10.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRILGRLDHPLVWPALTLALLLALDVVYRPSFLAVTMLDGHLFGAPIDILNRAAPLVIV CCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHCCCHHHHHH SLGMTLVIATRGIDISVGAIVAIAGATAAVILQADPSHLAQALIAAAGVGLLAGFWNGLL HHCCEEEEEECCCEEEHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH VAFVGMQPIIATLILMVAGRGVAQLLTDGQIIPIGVSGYLRLGDGYLATIPCSVWIAAAV HHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEECCCEEEECCCEEEEHHHHHHHHHHH VTLSALLVNRTALGLFIRAIGVNPVATRLVGLRSGMIVFSVYAFSGLTAAIAGIIASSNV HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC RSADGNNAGLLLELDAILAVTLGGTSLMGGRFSMAGTVLGALTIQTLTYTTYSIGVPPEA CCCCCCCCEEEEEEHHEEEEEECCCEECCCCHHHHHHHHHHHHHHHEEEEEEEECCCCCH TLVVKAVVVILVSVIQSDAARGLLMRPIRKALHGARARLINGSTTS HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHEEECCCCCC >Mature Secondary Structure MKRILGRLDHPLVWPALTLALLLALDVVYRPSFLAVTMLDGHLFGAPIDILNRAAPLVIV CCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHCCCHHHHHH SLGMTLVIATRGIDISVGAIVAIAGATAAVILQADPSHLAQALIAAAGVGLLAGFWNGLL HHCCEEEEEECCCEEEHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH VAFVGMQPIIATLILMVAGRGVAQLLTDGQIIPIGVSGYLRLGDGYLATIPCSVWIAAAV HHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEECCCEEEECCCEEEEHHHHHHHHHHH VTLSALLVNRTALGLFIRAIGVNPVATRLVGLRSGMIVFSVYAFSGLTAAIAGIIASSNV HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC RSADGNNAGLLLELDAILAVTLGGTSLMGGRFSMAGTVLGALTIQTLTYTTYSIGVPPEA CCCCCCCCEEEEEEHHEEEEEECCCEECCCCHHHHHHHHHHHHHHHEEEEEEEECCCCCH TLVVKAVVVILVSVIQSDAARGLLMRPIRKALHGARARLINGSTTS HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]