Click here to switch to the map view.

The map label for this gene is bkdR [H]

Identifier: 238023873

GI number: 238023873

Start: 493982

End: 494446

Strand: Reverse

Name: bkdR [H]

Synonym: bglu_2g04120

Alternate gene names: 238023873

Gene position: 494446-493982 (Counterclockwise)

Preceding gene: 238023877

Following gene: 238023871

Centisome position: 17.49

GC content: 69.46

Gene sequence:

>465_bases
ATGTTCGATCTCGACAAAACCGACCGCGCGATCCTGGCCGCCGTGCAGCGCGACGGGCGCATCCCGATCGCGCGGCTCGC
CGAATCGGTCGGCTTGAGCGAAACGCCGTGCGCGCGGCGTCTGAAGCGGCTGGAGAGCGAGGGCTACGTCGAGCGCTATC
GCGGGCAGCTGTCGCGACAGCGGCTCGGCTACGGCGTGGTGGCGTTCGTGCTGTTGCGCATCGCCGTCCATGAGCGAACC
CTGGCCGACCGCTTCGAACGCGAGGTGCTGGCGATGCCGCGCGTGCTGTCGTGCCACAACGTATCGGGCTCGGCCGACTA
TCTGCTGCAGGTGATCGCGCGCGATCTCGACGACTACGGCAGCTTCGTGCGCGACGCGCTGCGCGTGCTGCCCGGCGTGA
CGTCGGTGGAATCGGTGCTGTCGCTGCGCGAGGTGAAGGCCGACGCGGGCCTGCCGATGCCGTGA

Upstream 100 bases:

>100_bases
AAGTCGGCGGAGCGCTTTTGAGCTATCTACCCACTGCAATCAGGCAAGACGAGCGGCAATCCTCTATATTTCGATAACGA
AAAAACGGAAACCGCCAATC

Downstream 100 bases:

>100_bases
CGGGGCGCCAGGCGCCGCGGCCGCCGGCACGGCCGACCCACGCGGCGCGCCCGCGCCGCCGCCGCGCGGCTCAGCGCGCG
GCGGGCACGCGCAGGTGGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MFDLDKTDRAILAAVQRDGRIPIARLAESVGLSETPCARRLKRLESEGYVERYRGQLSRQRLGYGVVAFVLLRIAVHERT
LADRFEREVLAMPRVLSCHNVSGSADYLLQVIARDLDDYGSFVRDALRVLPGVTSVESVLSLREVKADAGLPMP

Sequences:

>Translated_154_residues
MFDLDKTDRAILAAVQRDGRIPIARLAESVGLSETPCARRLKRLESEGYVERYRGQLSRQRLGYGVVAFVLLRIAVHERT
LADRFEREVLAMPRVLSCHNVSGSADYLLQVIARDLDDYGSFVRDALRVLPGVTSVESVLSLREVKADAGLPMP
>Mature_154_residues
MFDLDKTDRAILAAVQRDGRIPIARLAESVGLSETPCARRLKRLESEGYVERYRGQLSRQRLGYGVVAFVLLRIAVHERT
LADRFEREVLAMPRVLSCHNVSGSADYLLQVIARDLDDYGSFVRDALRVLPGVTSVESVLSLREVKADAGLPMP

Specific function: Positive regulator of the bkd operon for branched-chain keto acid dehydrogenase complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=150, Percent_Identity=36, Blast_Score=105, Evalue=9e-25,
Organism=Escherichia coli, GI1787116, Length=144, Percent_Identity=35.4166666666667, Blast_Score=95, Evalue=2e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 17198; Mature: 17198

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDLDKTDRAILAAVQRDGRIPIARLAESVGLSETPCARRLKRLESEGYVERYRGQLSRQ
CCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
RLGYGVVAFVLLRIAVHERTLADRFEREVLAMPRVLSCHNVSGSADYLLQVIARDLDDYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
SFVRDALRVLPGVTSVESVLSLREVKADAGLPMP
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MFDLDKTDRAILAAVQRDGRIPIARLAESVGLSETPCARRLKRLESEGYVERYRGQLSRQ
CCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
RLGYGVVAFVLLRIAVHERTLADRFEREVLAMPRVLSCHNVSGSADYLLQVIARDLDDYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
SFVRDALRVLPGVTSVESVLSLREVKADAGLPMP
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]