Click here to switch to the map view.

The map label for this gene is sepC [H]

Identifier: 238023818

GI number: 238023818

Start: 421166

End: 422698

Strand: Direct

Name: sepC [H]

Synonym: bglu_2g03560

Alternate gene names: 238023818

Gene position: 421166-422698 (Clockwise)

Preceding gene: 238023817

Following gene: 238023820

Centisome position: 14.9

GC content: 74.17

Gene sequence:

>1533_bases
ATGAAAAACGACAAGACCATCCTGCGGCTCACGAAGCTGGCCGGCCTGAGCGCGCTGCTGGCCGCGCTGCTCGCGGCCTG
CGCGGTCGGGCCGGACTACCGGCGGCCCGCGGCGGCCACGCCCGCCGCGTTCAAGGAAGCCCCGACGCTGGCCGCCGGCG
AGCAGGCCGGCAGCTGGAAGCCGGCCGAGCCGGCCGATGCCGAACATCGTGGCGAGTGGTGGAAGGTGTTCGGCGACCCG
GTGCTCGACGCGCTCGAACAGCAGGCGCTCGACGCGAACCAGAACCTGAAGGCCGCCGCCGCGCGCGTGCAGGAGGCGCG
CGCCGCCACGCGCGCCGCGCGCTCGGCGTGGTTCCCGTCGCTCGACGCGGGCTTCGGGCCGACCCGCGAGGGCCTGTCGT
CGGCCTCGCAGTTCCGGCCGCAGGGCTCCGGGCCGGTCAACGCCACGCTGTGGCGCGCGCAGGGCAGCGTGTCCTACGAG
GCCGACCTGTTCGGCCGCGTCAGCCGCAACGTCGAGGCCTCGCGCGCCGACGCCGCGCAGAGCGAGGCACTGTTCCAGTC
GGTGCGGCTCGCGCTGCAGGCCGACGTCGCGCAGAACTACTTCGAACTGCGCCAGCTCGATGCGGACCAGGACCTGTACC
GGCGCACCGTGGCGCTGCGCGAGGAATCGCTGAAGCTCTCGCAGCGGCGCTTCAGCGAGGGCGACATCGATGATCTCGAC
GTGTCGCGCGCCAAGAACGAGCTGGCCAGCGCGCAGGCCGACGCGGTCGGCGTCGCGCGCCGCCGCGCGGCCTCCGAGCA
TGCGCTCGCGATCCTGCTCGGCAAGGCGCCGGCCGATTTCGCGTTCAAGCAGGCGCCGATCGCGCCGGTCACGCTGAGGA
TCCCGCCCGGCCTGCCGTCGGCGCTGCTGGAGCGGCGCCCCGACGTGGCCGCGGCCGAGCGTGCGATGGCGGCCGCCAAC
GCCCGGATCGGCCTGGCGAAGTCGGCGTATTTCCCGAAGCTCGACATCTCCGGCTCGTTCGGCTACGAGGCATCCACGCT
CGGCGAGCTGTTCATGTGGTCGAGCCGCACCTTCCTGCTCGGGCCGTTCGCGGGCACCGCGCTCACGCTGCCGCTGTTCG
ACGGCGGCCGGCGCAGCGCGGGCGTGCAGCAGGCGCGCGCGTCCTACGAGGAGCAGGTCGCGAACTACCGGCAGCAGGTG
CTGGTGGCGTTCCGCGAGGTCGAGGACCAGCTCTCCGACCTGCGCCTGCTCGACGAGCAGATCCGCGCGCAGGGCGAGGC
GGTCCGGGCCTCGCAGCGCGCGGCGAAGCTGTCGCGCACGCAGTATCAGGAAGGGCAGATCGCCTATCTGGACGTGATCG
ACAGCGAGCGCACGGTGCTGCAGTCGCAGCTGCAGGCGAACCAGCTGACGGGCGCGCAGGCGGTGGCGACGGTGAACCTG
ATCCGCGCGCTCGGCGGCGGCTGGGGCACGCCGGCGGCCGCCGCGGCCGCCGGGGCTTCCGCCCCGGCCGCGCCGGCGGT
GGCGCAGCGCTGA

Upstream 100 bases:

>100_bases
ACGTGGTGCTGCGCACGCTGGCCGGCGGCAAGATCCACGTCGCGCAGAAGGACAATTCGCGGTACGACGTCTCGGCCGCG
GACGCTTGAGGAATCGATCC

Downstream 100 bases:

>100_bases
GGCCGGGGCGCGGCGGCGAGGGCCACATTCAGGCCGCCGCGCCGCGATGAACGGCGCGGGCGAGCGATCGACGCGGGCCG
TTCCAGGCCCGCTTCGATCG

Product: RND efflux system outer membrane lipoprotein NodT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 510; Mature: 510

Protein sequence:

>510_residues
MKNDKTILRLTKLAGLSALLAALLAACAVGPDYRRPAAATPAAFKEAPTLAAGEQAGSWKPAEPADAEHRGEWWKVFGDP
VLDALEQQALDANQNLKAAAARVQEARAATRAARSAWFPSLDAGFGPTREGLSSASQFRPQGSGPVNATLWRAQGSVSYE
ADLFGRVSRNVEASRADAAQSEALFQSVRLALQADVAQNYFELRQLDADQDLYRRTVALREESLKLSQRRFSEGDIDDLD
VSRAKNELASAQADAVGVARRRAASEHALAILLGKAPADFAFKQAPIAPVTLRIPPGLPSALLERRPDVAAAERAMAAAN
ARIGLAKSAYFPKLDISGSFGYEASTLGELFMWSSRTFLLGPFAGTALTLPLFDGGRRSAGVQQARASYEEQVANYRQQV
LVAFREVEDQLSDLRLLDEQIRAQGEAVRASQRAAKLSRTQYQEGQIAYLDVIDSERTVLQSQLQANQLTGAQAVATVNL
IRALGGGWGTPAAAAAAGASAPAAPAVAQR

Sequences:

>Translated_510_residues
MKNDKTILRLTKLAGLSALLAALLAACAVGPDYRRPAAATPAAFKEAPTLAAGEQAGSWKPAEPADAEHRGEWWKVFGDP
VLDALEQQALDANQNLKAAAARVQEARAATRAARSAWFPSLDAGFGPTREGLSSASQFRPQGSGPVNATLWRAQGSVSYE
ADLFGRVSRNVEASRADAAQSEALFQSVRLALQADVAQNYFELRQLDADQDLYRRTVALREESLKLSQRRFSEGDIDDLD
VSRAKNELASAQADAVGVARRRAASEHALAILLGKAPADFAFKQAPIAPVTLRIPPGLPSALLERRPDVAAAERAMAAAN
ARIGLAKSAYFPKLDISGSFGYEASTLGELFMWSSRTFLLGPFAGTALTLPLFDGGRRSAGVQQARASYEEQVANYRQQV
LVAFREVEDQLSDLRLLDEQIRAQGEAVRASQRAAKLSRTQYQEGQIAYLDVIDSERTVLQSQLQANQLTGAQAVATVNL
IRALGGGWGTPAAAAAAGASAPAAPAVAQR
>Mature_510_residues
MKNDKTILRLTKLAGLSALLAALLAACAVGPDYRRPAAATPAAFKEAPTLAAGEQAGSWKPAEPADAEHRGEWWKVFGDP
VLDALEQQALDANQNLKAAAARVQEARAATRAARSAWFPSLDAGFGPTREGLSSASQFRPQGSGPVNATLWRAQGSVSYE
ADLFGRVSRNVEASRADAAQSEALFQSVRLALQADVAQNYFELRQLDADQDLYRRTVALREESLKLSQRRFSEGDIDDLD
VSRAKNELASAQADAVGVARRRAASEHALAILLGKAPADFAFKQAPIAPVTLRIPPGLPSALLERRPDVAAAERAMAAAN
ARIGLAKSAYFPKLDISGSFGYEASTLGELFMWSSRTFLLGPFAGTALTLPLFDGGRRSAGVQQARASYEEQVANYRQQV
LVAFREVEDQLSDLRLLDEQIRAQGEAVRASQRAAKLSRTQYQEGQIAYLDVIDSERTVLQSQLQANQLTGAQAVATVNL
IRALGGGWGTPAAAAAAGASAPAAPAVAQR

Specific function: Probable outer membrane component of the sepABC efflux pump with unknown specificity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=471, Percent_Identity=30.1486199575372, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI2367348, Length=435, Percent_Identity=26.6666666666667, Blast_Score=125, Evalue=7e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 54421; Mature: 54421

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNDKTILRLTKLAGLSALLAALLAACAVGPDYRRPAAATPAAFKEAPTLAAGEQAGSWK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC
PAEPADAEHRGEWWKVFGDPVLDALEQQALDANQNLKAAAARVQEARAATRAARSAWFPS
CCCCCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
LDAGFGPTREGLSSASQFRPQGSGPVNATLWRAQGSVSYEADLFGRVSRNVEASRADAAQ
CCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHH
SEALFQSVRLALQADVAQNYFELRQLDADQDLYRRTVALREESLKLSQRRFSEGDIDDLD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
VSRAKNELASAQADAVGVARRRAASEHALAILLGKAPADFAFKQAPIAPVTLRIPPGLPS
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCCEEEEECCCCCHH
ALLERRPDVAAAERAMAAANARIGLAKSAYFPKLDISGSFGYEASTLGELFMWSSRTFLL
HHHHCCCCHHHHHHHHHHHHCCCCCHHCCCCCCEECCCCCCCCHHHHHHHHHHCCCCEEE
GPFAGTALTLPLFDGGRRSAGVQQARASYEEQVANYRQQVLVAFREVEDQLSDLRLLDEQ
ECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRAQGEAVRASQRAAKLSRTQYQEGQIAYLDVIDSERTVLQSQLQANQLTGAQAVATVNL
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHH
IRALGGGWGTPAAAAAAGASAPAAPAVAQR
HHHHCCCCCCCHHHHHCCCCCCCCCHHCCC
>Mature Secondary Structure
MKNDKTILRLTKLAGLSALLAALLAACAVGPDYRRPAAATPAAFKEAPTLAAGEQAGSWK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC
PAEPADAEHRGEWWKVFGDPVLDALEQQALDANQNLKAAAARVQEARAATRAARSAWFPS
CCCCCCCCCCCCHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
LDAGFGPTREGLSSASQFRPQGSGPVNATLWRAQGSVSYEADLFGRVSRNVEASRADAAQ
CCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHH
SEALFQSVRLALQADVAQNYFELRQLDADQDLYRRTVALREESLKLSQRRFSEGDIDDLD
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
VSRAKNELASAQADAVGVARRRAASEHALAILLGKAPADFAFKQAPIAPVTLRIPPGLPS
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCCEEEEECCCCCHH
ALLERRPDVAAAERAMAAANARIGLAKSAYFPKLDISGSFGYEASTLGELFMWSSRTFLL
HHHHCCCCHHHHHHHHHHHHCCCCCHHCCCCCCEECCCCCCCCHHHHHHHHHHCCCCEEE
GPFAGTALTLPLFDGGRRSAGVQQARASYEEQVANYRQQVLVAFREVEDQLSDLRLLDEQ
ECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRAQGEAVRASQRAAKLSRTQYQEGQIAYLDVIDSERTVLQSQLQANQLTGAQAVATVNL
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHH
IRALGGGWGTPAAAAAAGASAPAAPAVAQR
HHHHCCCCCCCHHHHHCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9037074 [H]