| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is hrcV [H]
Identifier: 238023709
GI number: 238023709
Start: 277439
End: 279544
Strand: Reverse
Name: hrcV [H]
Synonym: bglu_2g02370
Alternate gene names: 238023709
Gene position: 279544-277439 (Counterclockwise)
Preceding gene: 238023710
Following gene: 238023708
Centisome position: 9.89
GC content: 69.61
Gene sequence:
>2106_bases ATGCTGAAGTCCCTGAAACTCCCCGCCGGCGGCGAAATCGGCATTGTCGCGCTGGTGGTGGCGATCATCTCGCTGATGAT CCTGCCGCTGCCGCCGCTGCTGATCGACATGCTGCTCGGCCTGAACATCACCATCAGCGTGACGCTGCTGATGATCACCA TGTACGTGCCCGACATCTCGGCGCTCTCGGCGTTCCCGTCGCTGCTGCTGTTCACCACGCTGTTCCGGCTCTCGCTGAAC ATCGCCTCCACCAAGTCGATCCTGCTGCACGCCGAGGCCGGCAACATCATCGAGAGCTTCGGCAAGCTGGTGGTGGGCGG CAACCTGGTGGTGGGCCTGGTGGTGTTCGCGATCATCACCACCGTGCAGTTCATCGTGATCGCCAAGGGTTCGGAGCGGG TGGCCGAGGTGGGCGCGCGCTTCACGCTCGACGCGCTGCCCGGCAAGCAGATGAGCATCGACGCGGACCTGCGCGCGAAC CTGCTCACGCCGGAGGAGGCCAAGCGCAAGCGCGCCACGCTGGCGGTGGAAAGCCAGCTGCACGGCGGCATGGACGGGGC GATGAAGTTCGTGAAGGGCGACGCGATCGCGGGCCTCATCATCACGATGATCAACATCCTGGCGGGCATCGCGGTGGGCG TGGCCTACCACGGCATGTCGGCCGGCGACGCGGCGAACCGCTTCTCGGTGCTGTCGGTCGGTGACGCGATGGTCTCGCAG ATCCCGTCGCTGCTGCTGTCGGTGGCCGCCGGCGTGATGATCACGCGGGTGGCCGACGAGCGCCAGGCCAAGCAGCGTTC GCTCGGCGACGAGATCGGCCACCAGCTCGGCTCGAGCAGCCGCGCGCTGTTCTTCGCCGCGGTGCTGCTGCTGGGCTTCG CGATCGTGCCGGGCTTCCCGTCGCTGCTGTTCGTGCTGCTGGCCGCGGCGCTGTCGTTCGCGGGCTACCGGCTGTCGGTC AGGAAGCCCTCGTCGCGCGACAGCGAGCATGGCGGCGCCGAGACGCTCGCCTCGATGCAGCGCGTGGGCGCCAAGACCGA GGTGCCGCCGATCCTGCCGCGCGCGCCGCAGTTCGCCTGCGCGGTGGGCGTGCGGATCTCGCCCGACCTGGCCGCGAAGC TGGCCATGCCCACCCTCGACGCCGCCTTCGAGGCCGAGCGCGCGGCGCTGCAGGAGGCGCTCGGGCTGCCGTTCCCCGGC ATCACGATGTGGGTCCACGCGCCGCTGCCGGTCGCCACCTTCGAGATCCTGATCCACGACGTGCCGCATCTGATGGTGAC GATGCCGCCCGGCAAGGCGATGCTGCCCGACCTGCGCCTGGTGCCGGCCGAGGTCGCGGCGGCCTCGGCCGAGAAGCTGC TGGCGCTGGCCGAGAAGGCCGAGGACGGCCCGCCGGTCGATTCGGCCGGCACGCCCACGCGCTGGATCGACGAGCGCGCG GTGCCGGCCAAGACGCCGGTGTGGCGCACCGAGCAGATCATCGCGCACGCCTGCGTGGCCGCCATGCGGCGCCACGCGAC GCTGTTTCTCGGCATCCAGGAGGTGCAGTGGATTCTCGACCAGCTCAGCCATGACGCGCCGGGCCTGGTGGCCGAGGTGC AGAAGGTGCTGCCGCCGCAGCGGATCGCCGACGTGCTGCGCCGGCTGCTGGAGGAACAGGTGTCGATCCGCAACGTGCGC TCGATCATGGAGAGCCTGATCGCCTGGGGCGCCAAGGAAAAGGACATGCTGATGCTCACCGAGTACGTGCGCGGCGATCT CTCGCGCTTCCTCGCGCACCGCGCCGCCAAGGGCGAGCGGCAGCTCTCGGCGGTGCTGTTCGACATGCAGGCCGAGCAGC ACATCCGCGCCGCGATCAAGCAGACGCCGACCGGCAACTTCCTCGCGCTGCCGCCCAACGACGCCGCGTTCCTGATCGAC CGGATCCAGTCGTTCGTCGGCGCCGCGCCGCGCGAGGGCGTGGTGCTGGTCACCTCGATGGACATCCGCCGCTACGTGCG GCGCATGATCGAGTCGCGGCTCGGCTGGCTGTCGGTCTATTCGTACCAGGAACTGGGCGAGCACGTCGAGCTCAAGCCCG TCGGCCGCGTGACGCTGAGCGCATGA
Upstream 100 bases:
>100_bases CGCGCTGTTCGAGACCATCGCCGCGATCCTGCGCTGGGTCGACTCGATCGGCGCGGCCCGCCGCGACACGCAACACTGAC CGCCGAGAGCCGGAGCCACG
Downstream 100 bases:
>100_bases CGGCCATCGATTCGCGCACCGCGCGCGTGATCCCCGGCACCGCCGCCGACGAGCCGGGCGGCGCGCGCGAGCGGCGCTTC GACTACGCGTCGCTGGCCGC
Product: type III secretion protein SctV
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 701; Mature: 701
Protein sequence:
>701_residues MLKSLKLPAGGEIGIVALVVAIISLMILPLPPLLIDMLLGLNITISVTLLMITMYVPDISALSAFPSLLLFTTLFRLSLN IASTKSILLHAEAGNIIESFGKLVVGGNLVVGLVVFAIITTVQFIVIAKGSERVAEVGARFTLDALPGKQMSIDADLRAN LLTPEEAKRKRATLAVESQLHGGMDGAMKFVKGDAIAGLIITMINILAGIAVGVAYHGMSAGDAANRFSVLSVGDAMVSQ IPSLLLSVAAGVMITRVADERQAKQRSLGDEIGHQLGSSSRALFFAAVLLLGFAIVPGFPSLLFVLLAAALSFAGYRLSV RKPSSRDSEHGGAETLASMQRVGAKTEVPPILPRAPQFACAVGVRISPDLAAKLAMPTLDAAFEAERAALQEALGLPFPG ITMWVHAPLPVATFEILIHDVPHLMVTMPPGKAMLPDLRLVPAEVAAASAEKLLALAEKAEDGPPVDSAGTPTRWIDERA VPAKTPVWRTEQIIAHACVAAMRRHATLFLGIQEVQWILDQLSHDAPGLVAEVQKVLPPQRIADVLRRLLEEQVSIRNVR SIMESLIAWGAKEKDMLMLTEYVRGDLSRFLAHRAAKGERQLSAVLFDMQAEQHIRAAIKQTPTGNFLALPPNDAAFLID RIQSFVGAAPREGVVLVTSMDIRRYVRRMIESRLGWLSVYSYQELGEHVELKPVGRVTLSA
Sequences:
>Translated_701_residues MLKSLKLPAGGEIGIVALVVAIISLMILPLPPLLIDMLLGLNITISVTLLMITMYVPDISALSAFPSLLLFTTLFRLSLN IASTKSILLHAEAGNIIESFGKLVVGGNLVVGLVVFAIITTVQFIVIAKGSERVAEVGARFTLDALPGKQMSIDADLRAN LLTPEEAKRKRATLAVESQLHGGMDGAMKFVKGDAIAGLIITMINILAGIAVGVAYHGMSAGDAANRFSVLSVGDAMVSQ IPSLLLSVAAGVMITRVADERQAKQRSLGDEIGHQLGSSSRALFFAAVLLLGFAIVPGFPSLLFVLLAAALSFAGYRLSV RKPSSRDSEHGGAETLASMQRVGAKTEVPPILPRAPQFACAVGVRISPDLAAKLAMPTLDAAFEAERAALQEALGLPFPG ITMWVHAPLPVATFEILIHDVPHLMVTMPPGKAMLPDLRLVPAEVAAASAEKLLALAEKAEDGPPVDSAGTPTRWIDERA VPAKTPVWRTEQIIAHACVAAMRRHATLFLGIQEVQWILDQLSHDAPGLVAEVQKVLPPQRIADVLRRLLEEQVSIRNVR SIMESLIAWGAKEKDMLMLTEYVRGDLSRFLAHRAAKGERQLSAVLFDMQAEQHIRAAIKQTPTGNFLALPPNDAAFLID RIQSFVGAAPREGVVLVTSMDIRRYVRRMIESRLGWLSVYSYQELGEHVELKPVGRVTLSA >Mature_701_residues MLKSLKLPAGGEIGIVALVVAIISLMILPLPPLLIDMLLGLNITISVTLLMITMYVPDISALSAFPSLLLFTTLFRLSLN IASTKSILLHAEAGNIIESFGKLVVGGNLVVGLVVFAIITTVQFIVIAKGSERVAEVGARFTLDALPGKQMSIDADLRAN LLTPEEAKRKRATLAVESQLHGGMDGAMKFVKGDAIAGLIITMINILAGIAVGVAYHGMSAGDAANRFSVLSVGDAMVSQ IPSLLLSVAAGVMITRVADERQAKQRSLGDEIGHQLGSSSRALFFAAVLLLGFAIVPGFPSLLFVLLAAALSFAGYRLSV RKPSSRDSEHGGAETLASMQRVGAKTEVPPILPRAPQFACAVGVRISPDLAAKLAMPTLDAAFEAERAALQEALGLPFPG ITMWVHAPLPVATFEILIHDVPHLMVTMPPGKAMLPDLRLVPAEVAAASAEKLLALAEKAEDGPPVDSAGTPTRWIDERA VPAKTPVWRTEQIIAHACVAAMRRHATLFLGIQEVQWILDQLSHDAPGLVAEVQKVLPPQRIADVLRRLLEEQVSIRNVR SIMESLIAWGAKEKDMLMLTEYVRGDLSRFLAHRAAKGERQLSAVLFDMQAEQHIRAAIKQTPTGNFLALPPNDAAFLID RIQSFVGAAPREGVVLVTSMDIRRYVRRMIESRLGWLSVYSYQELGEHVELKPVGRVTLSA
Specific function: Involved in the secretion of popA, a proteinaceous elicitor of the hypersensitivity response in plants [H]
COG id: COG4789
COG function: function code U; Type III secretory pathway, component EscV
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family [H]
Homologues:
Organism=Escherichia coli, GI1788187, Length=695, Percent_Identity=32.9496402877698, Blast_Score=301, Evalue=8e-83,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001712 - InterPro: IPR006302 [H]
Pfam domain/function: PF00771 FHIPEP [H]
EC number: NA
Molecular weight: Translated: 75274; Mature: 75274
Theoretical pI: Translated: 8.27; Mature: 8.27
Prosite motif: PS00994 FHIPEP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKSLKLPAGGEIGIVALVVAIISLMILPLPPLLIDMLLGLNITISVTLLMITMYVPDIS CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHH ALSAFPSLLLFTTLFRLSLNIASTKSILLHAEAGNIIESFGKLVVGGNLVVGLVVFAIIT HHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHCCEEECCHHHHHHHHHHHHH TVQFIVIAKGSERVAEVGARFTLDALPGKQMSIDADLRANLLTPEEAKRKRATLAVESQL HHHHHEEECCCHHHHHHCCCEEEECCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHH HGGMDGAMKFVKGDAIAGLIITMINILAGIAVGVAYHGMSAGDAANRFSVLSVGDAMVSQ CCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHH IPSLLLSVAAGVMITRVADERQAKQRSLGDEIGHQLGSSSRALFFAAVLLLGFAIVPGFP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCH SLLFVLLAAALSFAGYRLSVRKPSSRDSEHGGAETLASMQRVGAKTEVPPILPRAPQFAC HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHH AVGVRISPDLAAKLAMPTLDAAFEAERAALQEALGLPFPGITMWVHAPLPVATFEILIHD EECCEECHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHC VPHLMVTMPPGKAMLPDLRLVPAEVAAASAEKLLALAEKAEDGPPVDSAGTPTRWIDERA CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCC VPAKTPVWRTEQIIAHACVAAMRRHATLFLGIQEVQWILDQLSHDAPGLVAEVQKVLPPQ CCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHCCCCCCHHHHHHHHCCHH RIADVLRRLLEEQVSIRNVRSIMESLIAWGAKEKDMLMLTEYVRGDLSRFLAHRAAKGER HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH QLSAVLFDMQAEQHIRAAIKQTPTGNFLALPPNDAAFLIDRIQSFVGAAPREGVVLVTSM HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEECH DIRRYVRRMIESRLGWLSVYSYQELGEHVELKPVGRVTLSA HHHHHHHHHHHHHCCHHHHHHHHHHCCCEEECCCCCEEECC >Mature Secondary Structure MLKSLKLPAGGEIGIVALVVAIISLMILPLPPLLIDMLLGLNITISVTLLMITMYVPDIS CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHH ALSAFPSLLLFTTLFRLSLNIASTKSILLHAEAGNIIESFGKLVVGGNLVVGLVVFAIIT HHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHCCEEECCHHHHHHHHHHHHH TVQFIVIAKGSERVAEVGARFTLDALPGKQMSIDADLRANLLTPEEAKRKRATLAVESQL HHHHHEEECCCHHHHHHCCCEEEECCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHH HGGMDGAMKFVKGDAIAGLIITMINILAGIAVGVAYHGMSAGDAANRFSVLSVGDAMVSQ CCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHH IPSLLLSVAAGVMITRVADERQAKQRSLGDEIGHQLGSSSRALFFAAVLLLGFAIVPGFP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCH SLLFVLLAAALSFAGYRLSVRKPSSRDSEHGGAETLASMQRVGAKTEVPPILPRAPQFAC HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHH AVGVRISPDLAAKLAMPTLDAAFEAERAALQEALGLPFPGITMWVHAPLPVATFEILIHD EECCEECHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHC VPHLMVTMPPGKAMLPDLRLVPAEVAAASAEKLLALAEKAEDGPPVDSAGTPTRWIDERA CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCC VPAKTPVWRTEQIIAHACVAAMRRHATLFLGIQEVQWILDQLSHDAPGLVAEVQKVLPPQ CCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHCCCCCCHHHHHHHHCCHH RIADVLRRLLEEQVSIRNVRSIMESLIAWGAKEKDMLMLTEYVRGDLSRFLAHRAAKGER HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH QLSAVLFDMQAEQHIRAAIKQTPTGNFLALPPNDAAFLIDRIQSFVGAAPREGVVLVTSM HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEECH DIRRYVRRMIESRLGWLSVYSYQELGEHVELKPVGRVTLSA HHHHHHHHHHHHHCCHHHHHHHHHHCCCEEECCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8316211; 11823852 [H]