| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is lldD [H]
Identifier: 238023660
GI number: 238023660
Start: 204558
End: 205676
Strand: Direct
Name: lldD [H]
Synonym: bglu_2g01780
Alternate gene names: 238023660
Gene position: 204558-205676 (Clockwise)
Preceding gene: 238023659
Following gene: 238023662
Centisome position: 7.24
GC content: 70.87
Gene sequence:
>1119_bases ATGAGCGGAGAGCCGAACGCACGCGCGGACAGCGCCCCGTACACGATCCCCGACGACACGGTGTCGCTCGCCGATTACGC GCGGCACTTCGCGCGGCTTTGCGACCCGGCGATTGCCGCTTACATCGATGGCGCGGCAGCCGACGGCATCACGAAGCGCG ACAATCACGAAGCGTTCACGCGCATGAAGCTGCTGCCGCGCGCGCTGGCCGATCTGGCTGGCGCCAGCGCCAGCAGCGAA CTGTTCGGCACGCCGCTCGCCTATCCGATCCTGCTCGCGCCCACCGCCTATCATCGTCTCGTGCATCCCGACGGCGAACT CGCCACGGTCGAGGCAGCGTCGCTGACGCGCACCTGGATGACCGTCAGCGCGCAGGCGAGCGTACCGCTCGAAGCGATCG CGCAGCGCGCGAGTTCGCCGCTGTGGCTCCAACTCTACTGGCTGCCGCGCCGGGACGATACGCTCACGCTGGTCCGGCGC GCCGAGCAGGCCGGCTACCGCGCGATCGTTGTCACGCTCGACGCGGTCGTGAGCGGCGCGCGCAACGTCGAGCAGCGCGC GGGCTTTCGCCTGCCGCATGGCGTGTCGGCCGTCAACCTCGCTGCTTGCGCGCTGCCACCGCCCGCCGTCGCACGCACGG GTAGCCCGGTGTTCAGCCAGATGCTGGGGGGCGCGCCGACCTGGCCCGACATCGCGTGGCTGGCCGAGCGCAGCGTACTG CCGATCCTGTTGAAGGGGGTACTGAACCCGGCCGACGTGCAGCAGGCGCTCTCGGCCGGCGCGGCGGGACTGATCGTGTC GAACCACGGCGGCCGCACACTCGACACGCTGCCGGCCGCGCTCGAGGCGCTGCCGGGCGTTGCGAGCGCAGTTGCCGGGC GCGTACCCGTGCTGCTCGACGGCGGTATCCGCCGCGGCACCGACGTCGTGAAGGCGCTCGCGCTCGGTGCGTCGGCAGTG CTGATCGGTCAACCGGTCGTGCACGCGCTTGCCGTCGGGGGCATGCGCGGCGTTGCCCACATGCTGACGATCCTGCAGAC CGAATTCGAGGCCGCGATGGCGCTCGTCGGCCGAGCGCGGATTCGCGACATCGATGCATCGTTGATCTGGACCCGCTGA
Upstream 100 bases:
>100_bases TCGCGATCATCGACATTCGCGGCAAGCTCGGTGACCATGATCTCGCGGTGCTGAGCCTCGTGAACCACTACCATAACCTG CTGCGCCGGTGGTCGGAGCT
Downstream 100 bases:
>100_bases ACGGCCGAAGAAGCGTTGATCCGCCACCGGTTGCCGGAGATGGTGAACCGGATCAGGATAGCCAGTTCAAGCCGGATGCG CTCACCGAGCCGGTGCCGGG
Product: FMN-dependent alpha-hydroxy acid dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 372; Mature: 371
Protein sequence:
>372_residues MSGEPNARADSAPYTIPDDTVSLADYARHFARLCDPAIAAYIDGAAADGITKRDNHEAFTRMKLLPRALADLAGASASSE LFGTPLAYPILLAPTAYHRLVHPDGELATVEAASLTRTWMTVSAQASVPLEAIAQRASSPLWLQLYWLPRRDDTLTLVRR AEQAGYRAIVVTLDAVVSGARNVEQRAGFRLPHGVSAVNLAACALPPPAVARTGSPVFSQMLGGAPTWPDIAWLAERSVL PILLKGVLNPADVQQALSAGAAGLIVSNHGGRTLDTLPAALEALPGVASAVAGRVPVLLDGGIRRGTDVVKALALGASAV LIGQPVVHALAVGGMRGVAHMLTILQTEFEAAMALVGRARIRDIDASLIWTR
Sequences:
>Translated_372_residues MSGEPNARADSAPYTIPDDTVSLADYARHFARLCDPAIAAYIDGAAADGITKRDNHEAFTRMKLLPRALADLAGASASSE LFGTPLAYPILLAPTAYHRLVHPDGELATVEAASLTRTWMTVSAQASVPLEAIAQRASSPLWLQLYWLPRRDDTLTLVRR AEQAGYRAIVVTLDAVVSGARNVEQRAGFRLPHGVSAVNLAACALPPPAVARTGSPVFSQMLGGAPTWPDIAWLAERSVL PILLKGVLNPADVQQALSAGAAGLIVSNHGGRTLDTLPAALEALPGVASAVAGRVPVLLDGGIRRGTDVVKALALGASAV LIGQPVVHALAVGGMRGVAHMLTILQTEFEAAMALVGRARIRDIDASLIWTR >Mature_371_residues SGEPNARADSAPYTIPDDTVSLADYARHFARLCDPAIAAYIDGAAADGITKRDNHEAFTRMKLLPRALADLAGASASSEL FGTPLAYPILLAPTAYHRLVHPDGELATVEAASLTRTWMTVSAQASVPLEAIAQRASSPLWLQLYWLPRRDDTLTLVRRA EQAGYRAIVVTLDAVVSGARNVEQRAGFRLPHGVSAVNLAACALPPPAVARTGSPVFSQMLGGAPTWPDIAWLAERSVLP ILLKGVLNPADVQQALSAGAAGLIVSNHGGRTLDTLPAALEALPGVASAVAGRVPVLLDGGIRRGTDVVKALALGASAVL IGQPVVHALAVGGMRGVAHMLTILQTEFEAAMALVGRARIRDIDASLIWTR
Specific function: Unknown
COG id: COG1304
COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FMN hydroxy acid dehydrogenase domain [H]
Homologues:
Organism=Homo sapiens, GI11068137, Length=355, Percent_Identity=39.7183098591549, Blast_Score=249, Evalue=2e-66, Organism=Homo sapiens, GI54234014, Length=353, Percent_Identity=37.9603399433428, Blast_Score=234, Evalue=1e-61, Organism=Homo sapiens, GI7705393, Length=353, Percent_Identity=37.9603399433428, Blast_Score=234, Evalue=1e-61, Organism=Escherichia coli, GI1790033, Length=365, Percent_Identity=33.6986301369863, Blast_Score=185, Evalue=3e-48, Organism=Caenorhabditis elegans, GI193208036, Length=352, Percent_Identity=34.375, Blast_Score=205, Evalue=2e-53, Organism=Caenorhabditis elegans, GI32566217, Length=269, Percent_Identity=30.4832713754647, Blast_Score=129, Evalue=3e-30, Organism=Saccharomyces cerevisiae, GI6323587, Length=385, Percent_Identity=30.6493506493506, Blast_Score=175, Evalue=8e-45, Organism=Drosophila melanogaster, GI78707188, Length=354, Percent_Identity=38.7005649717514, Blast_Score=233, Evalue=2e-61, Organism=Drosophila melanogaster, GI281363140, Length=354, Percent_Identity=38.7005649717514, Blast_Score=232, Evalue=2e-61, Organism=Drosophila melanogaster, GI78707190, Length=354, Percent_Identity=38.7005649717514, Blast_Score=232, Evalue=2e-61,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR012133 - InterPro: IPR000262 - InterPro: IPR008259 - InterPro: IPR020920 [H]
Pfam domain/function: PF01070 FMN_dh [H]
EC number: =1.1.2.3 [H]
Molecular weight: Translated: 38971; Mature: 38840
Theoretical pI: Translated: 7.73; Mature: 7.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGEPNARADSAPYTIPDDTVSLADYARHFARLCDPAIAAYIDGAAADGITKRDNHEAFT CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHCCHHHCCCCCCCCHHHHH RMKLLPRALADLAGASASSELFGTPLAYPILLAPTAYHRLVHPDGELATVEAASLTRTWM HHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHCCCHHHHHHCCCCCCEEEEEHHHHHHHHE TVSAQASVPLEAIAQRASSPLWLQLYWLPRRDDTLTLVRRAEQAGYRAIVVTLDAVVSGA EEECCCCCCHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEHHHHHHCH RNVEQRAGFRLPHGVSAVNLAACALPPPAVARTGSPVFSQMLGGAPTWPDIAWLAERSVL HHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHCCCCHHHHHHHCCCCCCCHHHHHHHCCHH PILLKGVLNPADVQQALSAGAAGLIVSNHGGRTLDTLPAALEALPGVASAVAGRVPVLLD HHHHHHCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHCCCCEEEC GGIRRGTDVVKALALGASAVLIGQPVVHALAVGGMRGVAHMLTILQTEFEAAMALVGRAR CCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH IRDIDASLIWTR HHCCCCEEEECC >Mature Secondary Structure SGEPNARADSAPYTIPDDTVSLADYARHFARLCDPAIAAYIDGAAADGITKRDNHEAFT CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHCCHHHCCCCCCCCHHHHH RMKLLPRALADLAGASASSELFGTPLAYPILLAPTAYHRLVHPDGELATVEAASLTRTWM HHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHCCCHHHHHHCCCCCCEEEEEHHHHHHHHE TVSAQASVPLEAIAQRASSPLWLQLYWLPRRDDTLTLVRRAEQAGYRAIVVTLDAVVSGA EEECCCCCCHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEHHHHHHCH RNVEQRAGFRLPHGVSAVNLAACALPPPAVARTGSPVFSQMLGGAPTWPDIAWLAERSVL HHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHCCCCHHHHHHHCCCCCCCHHHHHHHCCHH PILLKGVLNPADVQQALSAGAAGLIVSNHGGRTLDTLPAALEALPGVASAVAGRVPVLLD HHHHHHCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHCCCCEEEC GGIRRGTDVVKALALGASAVLIGQPVVHALAVGGMRGVAHMLTILQTEFEAAMALVGRAR CCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH IRDIDASLIWTR HHCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA