| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is ytxE [H]
Identifier: 238023638
GI number: 238023638
Start: 161937
End: 163253
Strand: Direct
Name: ytxE [H]
Synonym: bglu_2g01470
Alternate gene names: 238023638
Gene position: 161937-163253 (Clockwise)
Preceding gene: 238023637
Following gene: 238023639
Centisome position: 5.73
GC content: 68.34
Gene sequence:
>1317_bases ATGAGCACGCATGCTCATGACGAGGCCTTCAGTTTCCTCGCGGAGCCGGGGCAGGGCGAGACCGTGTCCGGCGCGGGCGC GTCGGGGGGCGCTTTCGGGCCGCCCCCTGCGGCCATGGACAGCGTCGCGTTCGAGCCACCCGAGGACGCGGCCACGCGCC TCGCGCGCGTACAAGCTGCGCGCAATCCCTTGCTCGAGGCGGCGCGCTCGTTGCTGCGCATGCTCGGCGACATGCCGGCC TCGCTCGAATCGTCGGCGGCCGTCGAAAGCCTGCGCGCGCTGCTGGTGCGCGAGGTCGCCGCGTTTCAGAAGGTCTGCGA CAAGGCGAATTTGCCATGGAAGCACGTCGCTGCGGTGCGCTACGCACTGTGCACCGGACTCGACGAGGCGGCCAATCGCA CCCAGTGGGGCGGCGGCGGCATCTGGGCCGCGCGCAGCCTGTTGATCCGTTTCGAGGGCGAGGTCGACGGCGGCGAGAAA TTCTTCCTGCTGATCGGTCGGATGGCGACAGACCCGCAGGAGTACGTCGACGTGCTCGAGGTGATGTACCGGATTCTCGG CCTCGGCTTCGAGGGGCGCTATAGCGTCGCCGAGGATGGCAGCCGCCATCTCGAGGAGATACGCCAGCGGCTGCTCACCC TCGTGAGCGGCGCGCGCGACACGATGCGCTTGGAATTCTCGCCACATTGGCGCGGCGAGGCGTATGACCAGTTGAAATTG TTGCGCAGCGTCCCCGTGTGGGCCACGGCGAGCGTCGCTGCGCTCGTCGTGTTTGGTCGCTTCGGCTGGTACACCTATCA CTTGTTAACGGTCCGCAATCCGCTGGAGGCGCGGATCCTCGCGATCGGCCGCTCGCCCGCGCCGGCCGCACATGCAGCGC CGGCGCATCTGCCGCTACGGCTGTCGGTGCTGCTCAAGGATGAAATCGCGCGTGGCGAGTTGACGGTCGACGAGGACGCG CGGCACAGCAAGGTGGTGTTCCGGGGCGACACCATGTTCGTCACCGGCAAGAGCCGCGTCCGACCCGAGCTGGAGCCGGT TCTGGCAAAGGTGGCGCGCGAGGTCGCCCGGGTGGGCGGGCGTGTGATCGTGACCGGCTATACCGACAGCCAGCCGATCC ATACCCGCGAGTTTCCCGACAATCTGGTCCTGTCCCAGAAGCGTGCGGCGTTCGTCGCCGACGTGCTGAAGGCGCATGGC ACGCCCTCCGAGCGGATTGTGTCGATCGGCAAGGGCGACGCGCAGCCGGTGGCCGACAATGCCACGCCGCAGGGGCGCTC GCGCAACCGGCGCGTGGAAGTCCTCGTGGTGCAATGA
Upstream 100 bases:
>100_bases GGCCGTTCTGGGATCAGATCGCTCGGCAAGGTGGTCTCGCGATGCATATCGCCGGGCATTTCCCTGAGCTCAAGCTTGAA CTATGGGGCGTGCGCCAGAA
Downstream 100 bases:
>100_bases CGGAGAGGTCGAATGTCCCATCTGAACCGCTTCTTCAAATTCCTCATCTCGCGTCAAACGCTCGTGTTCGTGGCGATCGT GGCGGTCGCCGCGGCCATCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 438; Mature: 437
Protein sequence:
>438_residues MSTHAHDEAFSFLAEPGQGETVSGAGASGGAFGPPPAAMDSVAFEPPEDAATRLARVQAARNPLLEAARSLLRMLGDMPA SLESSAAVESLRALLVREVAAFQKVCDKANLPWKHVAAVRYALCTGLDEAANRTQWGGGGIWAARSLLIRFEGEVDGGEK FFLLIGRMATDPQEYVDVLEVMYRILGLGFEGRYSVAEDGSRHLEEIRQRLLTLVSGARDTMRLEFSPHWRGEAYDQLKL LRSVPVWATASVAALVVFGRFGWYTYHLLTVRNPLEARILAIGRSPAPAAHAAPAHLPLRLSVLLKDEIARGELTVDEDA RHSKVVFRGDTMFVTGKSRVRPELEPVLAKVAREVARVGGRVIVTGYTDSQPIHTREFPDNLVLSQKRAAFVADVLKAHG TPSERIVSIGKGDAQPVADNATPQGRSRNRRVEVLVVQ
Sequences:
>Translated_438_residues MSTHAHDEAFSFLAEPGQGETVSGAGASGGAFGPPPAAMDSVAFEPPEDAATRLARVQAARNPLLEAARSLLRMLGDMPA SLESSAAVESLRALLVREVAAFQKVCDKANLPWKHVAAVRYALCTGLDEAANRTQWGGGGIWAARSLLIRFEGEVDGGEK FFLLIGRMATDPQEYVDVLEVMYRILGLGFEGRYSVAEDGSRHLEEIRQRLLTLVSGARDTMRLEFSPHWRGEAYDQLKL LRSVPVWATASVAALVVFGRFGWYTYHLLTVRNPLEARILAIGRSPAPAAHAAPAHLPLRLSVLLKDEIARGELTVDEDA RHSKVVFRGDTMFVTGKSRVRPELEPVLAKVAREVARVGGRVIVTGYTDSQPIHTREFPDNLVLSQKRAAFVADVLKAHG TPSERIVSIGKGDAQPVADNATPQGRSRNRRVEVLVVQ >Mature_437_residues STHAHDEAFSFLAEPGQGETVSGAGASGGAFGPPPAAMDSVAFEPPEDAATRLARVQAARNPLLEAARSLLRMLGDMPAS LESSAAVESLRALLVREVAAFQKVCDKANLPWKHVAAVRYALCTGLDEAANRTQWGGGGIWAARSLLIRFEGEVDGGEKF FLLIGRMATDPQEYVDVLEVMYRILGLGFEGRYSVAEDGSRHLEEIRQRLLTLVSGARDTMRLEFSPHWRGEAYDQLKLL RSVPVWATASVAALVVFGRFGWYTYHLLTVRNPLEARILAIGRSPAPAAHAAPAHLPLRLSVLLKDEIARGELTVDEDAR HSKVVFRGDTMFVTGKSRVRPELEPVLAKVAREVARVGGRVIVTGYTDSQPIHTREFPDNLVLSQKRAAFVADVLKAHGT PSERIVSIGKGDAQPVADNATPQGRSRNRRVEVLVVQ
Specific function: May be involved in some transport function [H]
COG id: COG3455
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell membrane; Single-pass type II membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 OmpA-like domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006665 [H]
Pfam domain/function: PF00691 OmpA [H]
EC number: NA
Molecular weight: Translated: 47677; Mature: 47546
Theoretical pI: Translated: 8.26; Mature: 8.26
Prosite motif: PS51123 OMPA_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTHAHDEAFSFLAEPGQGETVSGAGASGGAFGPPPAAMDSVAFEPPEDAATRLARVQAA CCCCCHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHH RNPLLEAARSLLRMLGDMPASLESSAAVESLRALLVREVAAFQKVCDKANLPWKHVAAVR HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH YALCTGLDEAANRTQWGGGGIWAARSLLIRFEGEVDGGEKFFLLIGRMATDPQEYVDVLE HHHHHCCHHHHCCCCCCCCHHHHHHHEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHH VMYRILGLGFEGRYSVAEDGSRHLEEIRQRLLTLVSGARDTMRLEFSPHWRGEAYDQLKL HHHHHHCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHH LRSVPVWATASVAALVVFGRFGWYTYHLLTVRNPLEARILAIGRSPAPAAHAAPAHLPLR HHHCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCHHEEEEEECCCCCCCCCCCCCCCCEE LSVLLKDEIARGELTVDEDARHSKVVFRGDTMFVTGKSRVRPELEPVLAKVAREVARVGG EEEEEHHHHCCCCEEECCCCCCCEEEEECCEEEEECCHHCCCHHHHHHHHHHHHHHHCCC RVIVTGYTDSQPIHTREFPDNLVLSQKRAAFVADVLKAHGTPSERIVSIGKGDAQPVADN EEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCCCCCCC ATPQGRSRNRRVEVLVVQ CCCCCCCCCCEEEEEEEC >Mature Secondary Structure STHAHDEAFSFLAEPGQGETVSGAGASGGAFGPPPAAMDSVAFEPPEDAATRLARVQAA CCCCHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHH RNPLLEAARSLLRMLGDMPASLESSAAVESLRALLVREVAAFQKVCDKANLPWKHVAAVR HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH YALCTGLDEAANRTQWGGGGIWAARSLLIRFEGEVDGGEKFFLLIGRMATDPQEYVDVLE HHHHHCCHHHHCCCCCCCCHHHHHHHEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHH VMYRILGLGFEGRYSVAEDGSRHLEEIRQRLLTLVSGARDTMRLEFSPHWRGEAYDQLKL HHHHHHCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHH LRSVPVWATASVAALVVFGRFGWYTYHLLTVRNPLEARILAIGRSPAPAAHAAPAHLPLR HHHCCCHHHHHHHHHHHHHHHCCEEEEEEEECCCHHEEEEEECCCCCCCCCCCCCCCCEE LSVLLKDEIARGELTVDEDARHSKVVFRGDTMFVTGKSRVRPELEPVLAKVAREVARVGG EEEEEHHHHCCCCEEECCCCCCCEEEEECCEEEEECCHHCCCHHHHHHHHHHHHHHHCCC RVIVTGYTDSQPIHTREFPDNLVLSQKRAAFVADVLKAHGTPSERIVSIGKGDAQPVADN EEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCCCCCCC ATPQGRSRNRRVEVLVVQ CCCCCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7934817; 9387221; 9384377 [H]