| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is kdgR [C]
Identifier: 238023576
GI number: 238023576
Start: 79838
End: 80566
Strand: Reverse
Name: kdgR [C]
Synonym: bglu_2g00780
Alternate gene names: 238023576
Gene position: 80566-79838 (Counterclockwise)
Preceding gene: 238023577
Following gene: 238023566
Centisome position: 2.85
GC content: 65.29
Gene sequence:
>729_bases ATGTCGAGCCTCACCAAAATGCTGTCCATCCTCGACGTCTTCTCTTCGTCCGCGATGTCGATGACCGCCGAGGAAATCGC CGAGCATCTGGGCTTCTCGCGCACCACTTGCTACCGTTACGTGAAGGAGCTGGCTTCGGTCGGCCTGCTCGTCGGCACCA ACGGCCGCTATACGCTCGGCCCGCGCATCATCCATCTCGACTACAACATGCGGCAGTCGGACCCGACGCTGACCGCCGCA CGGCCCGTCATCCAGAAACTGGTTCAGGTCACCGGCGGCGACGCGCTCGTCTCGACGCTGTTCGACGAGCAAATCATCAA CGTGATGCACGAAACCGGCGCCGAGAACCTGCAGCTGGGCTTCGGCCGCGGCCGCATCATGCCGCTGTTCCAGGGTGCGT CGTCGAAAGTGATCGTGGCCGCGATGTCGCGCTCGCGGCTGAAGCGCCTGCACGAACGGCACCACGCCGAGCTGGGCGAG TTCGCCGCCGACTGGACGCAGTTCTGGCGTGCCTGCCAGCAGATCGTCGAGGCCGGATACTGCATCTCGCGGGGCGAGCT GGACGCCGGGTTCGTCGGCATCGCCGCGCCGATCCGCACGGCCAGCAGCGGCGAGATCAACAGCAGCCTGTCGCTGATCT TTCGCGCCGAACACTTCGCGCTGTTCGACGAACAGGTACTCGGCAAGCTCCTGATCGACGCCACGGCACGGATCGGCGAC GCCACCTGA
Upstream 100 bases:
>100_bases AGGGCCTGCTGCCCGCGGCCGCGCATGCCGTGCCGCAGCCCGACCCGCGTTCGTCTTCCCCGTTCCATTGCCGCCAGCCG TCTGAATCCCGGATCCCCTC
Downstream 100 bases:
>100_bases GCCTGCCTGCGGCGCCGCCAGCGAGGCGCCGGCCGATCGCCCGGCCGCGCGCGCTCAATTCATCTGCGTGATGAACTTGG TGACCAGGTAGCCGTCGAAG
Product: IclR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator; Transcriptional Regulator IclR Family; Regulatory Proteins IclR; Transcriptional Regulator Family; Transcription Regulator Protein; IclR Helix-Turn-Helix Domain-Containing; Transcriptional Regulatory Protein; Helix-Turn-Helix Type; DeoR-Like Helix-Turn-Helix Domain-Containing; Regulatory Protein IclR; IclR Family Transcription Regulator Protein; Transcriptional Regulator Family Protein; IclR-Family Transcriptional Regulator
Number of amino acids: Translated: 242; Mature: 241
Protein sequence:
>242_residues MSSLTKMLSILDVFSSSAMSMTAEEIAEHLGFSRTTCYRYVKELASVGLLVGTNGRYTLGPRIIHLDYNMRQSDPTLTAA RPVIQKLVQVTGGDALVSTLFDEQIINVMHETGAENLQLGFGRGRIMPLFQGASSKVIVAAMSRSRLKRLHERHHAELGE FAADWTQFWRACQQIVEAGYCISRGELDAGFVGIAAPIRTASSGEINSSLSLIFRAEHFALFDEQVLGKLLIDATARIGD AT
Sequences:
>Translated_242_residues MSSLTKMLSILDVFSSSAMSMTAEEIAEHLGFSRTTCYRYVKELASVGLLVGTNGRYTLGPRIIHLDYNMRQSDPTLTAA RPVIQKLVQVTGGDALVSTLFDEQIINVMHETGAENLQLGFGRGRIMPLFQGASSKVIVAAMSRSRLKRLHERHHAELGE FAADWTQFWRACQQIVEAGYCISRGELDAGFVGIAAPIRTASSGEINSSLSLIFRAEHFALFDEQVLGKLLIDATARIGD AT >Mature_241_residues SSLTKMLSILDVFSSSAMSMTAEEIAEHLGFSRTTCYRYVKELASVGLLVGTNGRYTLGPRIIHLDYNMRQSDPTLTAAR PVIQKLVQVTGGDALVSTLFDEQIINVMHETGAENLQLGFGRGRIMPLFQGASSKVIVAAMSRSRLKRLHERHHAELGEF AADWTQFWRACQQIVEAGYCISRGELDAGFVGIAAPIRTASSGEINSSLSLIFRAEHFALFDEQVLGKLLIDATARIGDA T
Specific function: Transcriptional Regulator Of The Kdgk Gene For The Kdg Kinase And The Kdgt Gene For The Kdg Permease. [C]
COG id: COG1414
COG function: function code K; Transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26511; Mature: 26380
Theoretical pI: Translated: 6.88; Mature: 6.88
Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSLTKMLSILDVFSSSAMSMTAEEIAEHLGFSRTTCYRYVKELASVGLLVGTNGRYTLG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEECCCCEEEC PRIIHLDYNMRQSDPTLTAARPVIQKLVQVTGGDALVSTLFDEQIINVMHETGAENLQLG CEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEE FGRGRIMPLFQGASSKVIVAAMSRSRLKRLHERHHAELGEFAADWTQFWRACQQIVEAGY CCCCCEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC CISRGELDAGFVGIAAPIRTASSGEINSSLSLIFRAEHFALFDEQVLGKLLIDATARIGD EECCCCCCCCCEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC AT CC >Mature Secondary Structure SSLTKMLSILDVFSSSAMSMTAEEIAEHLGFSRTTCYRYVKELASVGLLVGTNGRYTLG CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEECCCCEEEC PRIIHLDYNMRQSDPTLTAARPVIQKLVQVTGGDALVSTLFDEQIINVMHETGAENLQLG CEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEE FGRGRIMPLFQGASSKVIVAAMSRSRLKRLHERHHAELGEFAADWTQFWRACQQIVEAGY CCCCCEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC CISRGELDAGFVGIAAPIRTASSGEINSSLSLIFRAEHFALFDEQVLGKLLIDATARIGD EECCCCCCCCCEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC AT CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA