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The map label for this gene is rlpA [C]

Identifier: 237814212

GI number: 237814212

Start: 3840395

End: 3841087

Strand: Reverse

Name: rlpA [C]

Synonym: GBP346_A4007

Alternate gene names: 237814212

Gene position: 3841087-3840395 (Counterclockwise)

Preceding gene: 237814216

Following gene: 237814210

Centisome position: 93.72

GC content: 65.51

Gene sequence:

>693_bases
ATGTCCGTCCGGATCGCATTCGTAGCGACACGATCCGTACAAGCAGGCGACACGTCGATGAAATTTCGATTACCGAGGCA
TCTCGGGACTCTAGCTGTATTTTTCGCGCTGACAGGCTGCGCGGTGCCGCCGAACGCACCGACCTCCGAGCAGGCGAAAA
GCGCCGCGTCGAAGGATGCGCTGCGCACGGCCGCATCGGGCGCGGCCAGCAACAATAAGGAATCGGCGGGCGCGCCGCTG
AACTTCGACACGGCGCTCGCCTCGATGCCGGCCGCCGGCTCGCAGGACGTCTCGCGCCAATCGCTCGCGGACGCGAAGCC
GATCGATGCCGCGGACATCTCGGATTTCCGGCAGACCGGCCGCGCGTCATGGTACGGCAAGGGTTTTCACGGCCGCCGCA
CCGCGAACGGCGAACGCTTCAACATGAACGAATTCACCGCCGCACACCGGACGCTGCCGCTCGCGTCATACGTGCGCGTG
ACGAACCAGGCGAACGGCAAGTCCGTCGTCGTGAAGATCAATGATCGCGGTCCGTTCTCGCGCGGGCGGATCCTCGATCT
GTCGTACGCGGCCGCGAAGGTGATCGGCCTGGTCCATGCGGGTACCGCGCGCGTGAAGATCCAGGGGCTCTCGCCTGAAG
AGGCGCGCGTCGCGCGCGACGAGATGCTCGCGTCGAACAGCACGACGAAGTAA

Upstream 100 bases:

>100_bases
GGACAGGTTGCGCCAGACGTGAAAGCTAATCAGGACCGGTTGCGGCAGAACGTGAGCCGCGCCAATGCAAGCCGCCCGCG
CAAGCGCGACTGGGGCATGC

Downstream 100 bases:

>100_bases
TCGCGACAACGGCGTTGCATCGCCCGCCGGGCGGCGATCGAACGCAGACGAAAAGGGCCGCTTCATGCGGCCCTTTCGCT
TTTGCAGCGAATCCTTACTC

Product: rare lipoprotein A family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MSVRIAFVATRSVQAGDTSMKFRLPRHLGTLAVFFALTGCAVPPNAPTSEQAKSAASKDALRTAASGAASNNKESAGAPL
NFDTALASMPAAGSQDVSRQSLADAKPIDAADISDFRQTGRASWYGKGFHGRRTANGERFNMNEFTAAHRTLPLASYVRV
TNQANGKSVVVKINDRGPFSRGRILDLSYAAAKVIGLVHAGTARVKIQGLSPEEARVARDEMLASNSTTK

Sequences:

>Translated_230_residues
MSVRIAFVATRSVQAGDTSMKFRLPRHLGTLAVFFALTGCAVPPNAPTSEQAKSAASKDALRTAASGAASNNKESAGAPL
NFDTALASMPAAGSQDVSRQSLADAKPIDAADISDFRQTGRASWYGKGFHGRRTANGERFNMNEFTAAHRTLPLASYVRV
TNQANGKSVVVKINDRGPFSRGRILDLSYAAAKVIGLVHAGTARVKIQGLSPEEARVARDEMLASNSTTK
>Mature_229_residues
SVRIAFVATRSVQAGDTSMKFRLPRHLGTLAVFFALTGCAVPPNAPTSEQAKSAASKDALRTAASGAASNNKESAGAPLN
FDTALASMPAAGSQDVSRQSLADAKPIDAADISDFRQTGRASWYGKGFHGRRTANGERFNMNEFTAAHRTLPLASYVRVT
NQANGKSVVVKINDRGPFSRGRILDLSYAAAKVIGLVHAGTARVKIQGLSPEEARVARDEMLASNSTTK

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=81, Percent_Identity=50.6172839506173, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 24295; Mature: 24163

Theoretical pI: Translated: 11.00; Mature: 11.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVRIAFVATRSVQAGDTSMKFRLPRHLGTLAVFFALTGCAVPPNAPTSEQAKSAASKDA
CCEEEEEEEECCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
LRTAASGAASNNKESAGAPLNFDTALASMPAAGSQDVSRQSLADAKPIDAADISDFRQTG
HHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHC
RASWYGKGFHGRRTANGERFNMNEFTAAHRTLPLASYVRVTNQANGKSVVVKINDRGPFS
CCCCCCCCCCCCCCCCCCEECCHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEECCCCCCC
RGRILDLSYAAAKVIGLVHAGTARVKIQGLSPEEARVARDEMLASNSTTK
CCCEEEHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SVRIAFVATRSVQAGDTSMKFRLPRHLGTLAVFFALTGCAVPPNAPTSEQAKSAASKDA
CEEEEEEEECCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
LRTAASGAASNNKESAGAPLNFDTALASMPAAGSQDVSRQSLADAKPIDAADISDFRQTG
HHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHC
RASWYGKGFHGRRTANGERFNMNEFTAAHRTLPLASYVRVTNQANGKSVVVKINDRGPFS
CCCCCCCCCCCCCCCCCCEECCHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEECCCCCCC
RGRILDLSYAAAKVIGLVHAGTARVKIQGLSPEEARVARDEMLASNSTTK
CCCEEEHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]