Click here to switch to the map view.

The map label for this gene is yraP [C]

Identifier: 237814208

GI number: 237814208

Start: 3837415

End: 3838215

Strand: Reverse

Name: yraP [C]

Synonym: GBP346_A4003

Alternate gene names: 237814208

Gene position: 3838215-3837415 (Counterclockwise)

Preceding gene: 237814209

Following gene: 237814207

Centisome position: 93.65

GC content: 69.04

Gene sequence:

>801_bases
ATGAGTAACAGCCGCGTCAGACAGACGCTAGTCAGAACCACGCTCGTGATCGGCCTGTCGGCCGGCCTCGCCGCCACGCT
GCAGGGCTGCGTGCTCGCGGTCGCCGGCGCGGCGGCGGGCGGCGGCGCGCTCGTCGCGACCGATCGCCGCACGCTCGGCG
CGCAGACCGAGGATCGCGAGATCCAGGTGAAGGCGTTGACGCAGATGAACAACGGGCTGCCGGACGGCTCGCACGTGAAC
GTGACGGTGTTCAACCGCCGCGTGCTGCTGACGGGCGAAGTGCCGAGCGACGCCGCTAAGCAGCGCGCCGAAGAGATCGT
CCGAGCGATCAACAACGTGAACTCGATCGTCAACGAGCTCGCGGTGGGGCCGGCGAGCTCGCTGTCTGATCGGGCGAACG
ATTCGTATCTCGAGGGCCGCGTGAAGACCGCGATGATCGCCGAGAAGGGGATTTCCGCGAACAACTACAAAGTGGTGTGC
GAGCGCGGCAACGTTTATTTGATGGGCCTCGTGACGACCGACGAAGGCAGCCGGGGCGCGGATGTCGCGAGCCGCGTGCC
GGGCGTCGAGAAGGTCGTCAAGGTGTTCCAGTACATCAAGCCGCAGGATGCGCAGGCGCTGACGGCGGCGACGCCCGCGA
GCGGCGCGTCGGCGGCCGCGGCGCCCGCGACGGCGCCCGAAGGCGCGACGGTGGGGGCGGTGCCGGATTCGAGCGTCACC
GCGACACCGCTATCGGCGCCGGCGCCGGTTTCCAATTCGTCGAACGTGCATCCGGGCAATCCGAAGGCGGGGACGCCGTG
A

Upstream 100 bases:

>100_bases
GGTGCGCATCCAGGAAGTCCATCTGCTGACCATCCACTGCCTGTGCGACGGCATCGACGCGATGCTGCTGGGCGAGGATT
GATTCGAAGGAGAGCCGTCG

Downstream 100 bases:

>100_bases
CGATTGCGAAGCGCGTGAAACGGACGATGAGCGCAGCGGCCGCCGCGATGGCGGTGGTGAGCTGCGCGATGGCGGCCGCG
CCGGCGGCGCATGCGGATGC

Product: transport-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MSNSRVRQTLVRTTLVIGLSAGLAATLQGCVLAVAGAAAGGGALVATDRRTLGAQTEDREIQVKALTQMNNGLPDGSHVN
VTVFNRRVLLTGEVPSDAAKQRAEEIVRAINNVNSIVNELAVGPASSLSDRANDSYLEGRVKTAMIAEKGISANNYKVVC
ERGNVYLMGLVTTDEGSRGADVASRVPGVEKVVKVFQYIKPQDAQALTAATPASGASAAAAPATAPEGATVGAVPDSSVT
ATPLSAPAPVSNSSNVHPGNPKAGTP

Sequences:

>Translated_266_residues
MSNSRVRQTLVRTTLVIGLSAGLAATLQGCVLAVAGAAAGGGALVATDRRTLGAQTEDREIQVKALTQMNNGLPDGSHVN
VTVFNRRVLLTGEVPSDAAKQRAEEIVRAINNVNSIVNELAVGPASSLSDRANDSYLEGRVKTAMIAEKGISANNYKVVC
ERGNVYLMGLVTTDEGSRGADVASRVPGVEKVVKVFQYIKPQDAQALTAATPASGASAAAAPATAPEGATVGAVPDSSVT
ATPLSAPAPVSNSSNVHPGNPKAGTP
>Mature_265_residues
SNSRVRQTLVRTTLVIGLSAGLAATLQGCVLAVAGAAAGGGALVATDRRTLGAQTEDREIQVKALTQMNNGLPDGSHVNV
TVFNRRVLLTGEVPSDAAKQRAEEIVRAINNVNSIVNELAVGPASSLSDRANDSYLEGRVKTAMIAEKGISANNYKVVCE
RGNVYLMGLVTTDEGSRGADVASRVPGVEKVVKVFQYIKPQDAQALTAATPASGASAAAAPATAPEGATVGAVPDSSVTA
TPLSAPAPVSNSSNVHPGNPKAGTP

Specific function: Unknown

COG id: COG2823

COG function: function code R; Predicted periplasmic or secreted lipoprotein

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 BON domains [H]

Homologues:

Organism=Escherichia coli, GI1789540, Length=179, Percent_Identity=34.6368715083799, Blast_Score=107, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007055
- InterPro:   IPR014004 [H]

Pfam domain/function: PF04972 BON [H]

EC number: NA

Molecular weight: Translated: 27036; Mature: 26905

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNSRVRQTLVRTTLVIGLSAGLAATLQGCVLAVAGAAAGGGALVATDRRTLGAQTEDRE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHCCCCCCCCE
IQVKALTQMNNGLPDGSHVNVTVFNRRVLLTGEVPSDAAKQRAEEIVRAINNVNSIVNEL
EEEEEEHHHHCCCCCCCEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AVGPASSLSDRANDSYLEGRVKTAMIAEKGISANNYKVVCERGNVYLMGLVTTDEGSRGA
HCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEEEECCCCCCC
DVASRVPGVEKVVKVFQYIKPQDAQALTAATPASGASAAAAPATAPEGATVGAVPDSSVT
HHHHHCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCE
ATPLSAPAPVSNSSNVHPGNPKAGTP
ECCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SNSRVRQTLVRTTLVIGLSAGLAATLQGCVLAVAGAAAGGGALVATDRRTLGAQTEDRE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHCCCCCCCCE
IQVKALTQMNNGLPDGSHVNVTVFNRRVLLTGEVPSDAAKQRAEEIVRAINNVNSIVNEL
EEEEEEHHHHCCCCCCCEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AVGPASSLSDRANDSYLEGRVKTAMIAEKGISANNYKVVCERGNVYLMGLVTTDEGSRGA
HCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEEEECCCCCCC
DVASRVPGVEKVVKVFQYIKPQDAQALTAATPASGASAAAAPATAPEGATVGAVPDSSVT
HHHHHCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCE
ATPLSAPAPVSNSSNVHPGNPKAGTP
ECCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]