Click here to switch to the map view.

The map label for this gene is ccsA [H]

Identifier: 237814111

GI number: 237814111

Start: 3748538

End: 3749728

Strand: Reverse

Name: ccsA [H]

Synonym: GBP346_A3897

Alternate gene names: 237814111

Gene position: 3749728-3748538 (Counterclockwise)

Preceding gene: 237814112

Following gene: 237814110

Centisome position: 91.49

GC content: 66.25

Gene sequence:

>1191_bases
ATGGATCTGACCCAAGTTTCGTCTTCCCGCGCGCCGCGCGCTTCCGGCGCGGCCGCGCCGCTGCTCTTCGACGAGCGGCC
GTTCCTGCGGCGGCTGTCCCTCGTCGACTGGCTGTTCGCCCTGGCGCTCGTGGCGGGCGCGGGCTTCGCGCTCGCGCGGT
ACCACGCGCACATGGACTATTACGACACGGCCGTGCTGATCGGCACCGTGCCCGCGCTCGTCGCGCTCGGCTGGCGCTGG
AAGCCCGCGCGGCTCTTGATGGCGGCGATCGCCGCGCTCTCGCTCGTGTCGCTGCAGCTCTATCACGGCGACCTCGCGCG
CGCCGATTCGGCGTTCCTGCTCAAGTACTTCCTGTCGAGCCAATCGGCGATCCTGTGGATGAGCGCGCTGTTCGTGCTCG
CGACCCTTTTCTACTGGATCGGCATGCTGTCGCGCTCGGAGACGGGCGGCGCGATCGGCCAGCGGCTCACGTGGATCGCG
GTGCTGATGGGTTTCACGGGCCTGATGGTGCGCTGGTACGAGTCATACCTGATCGGCGCGGACGTCGGCCACATTCCGGT
GTCGAACCTGTATGAAGTCTTCGTGCTGTTCAGCCTCATCACCGCGCTTCTCTATCTGTATTACGAAGGGCATTACGGCA
CGCGCGCGCTCGGCGCGTTCGTGCTGCTCGTGATCAGCGCGGCGGTCGGCTTCCTGATGTGGTACTCGATCGCACGCGAC
GCGCAGCAGATCCAGCCGCTCGTGCCCGCGCTGCAGAGCTGGTGGATGAAGATCCACGTGCCGGCGAACTTCATCGGCTA
CGGCAGCTTCGCGCTGTCCGCGATGGTCGCGGTTGCGTATCTGTCGAAGGAGCGCGGCGTACTCGCCGATCGCCTGCCGG
CGCTCGAGGTGCTCGACGACGTGATGTACAAATCGATCGCGGTCGGCTTCGCGTTCTTCACGATCGCGACGATCCTCGGC
GCGCTGTGGGCGGCCGAGGCGTGGGGCGGCTACTGGAGCTGGGACCCGAAGGAAACCTGGGCGCTCATCGTGTGGCTGAA
TTATGCGGCGTGGCTGCACATGCGTCTGATGAAAGGGCTGCGCGGCACGGTCGCCGCATGGTGGGCGCTGACGGGCCTGC
TCGTCACGACGTTCGCATTCCTCGGCGTCAACATGTTCCTGTCCGGCTTGCACAGTTACGGCAAGCTGTAA

Upstream 100 bases:

>100_bases
GAATTCGTGCAGACGCGCGACGCGGCCGGGGCCGCCCTCGGCGCGCCGGCCTTCCGCGCGCCCGACGGCGCCGGCACCAA
GGACTCGACTCGGTAACATC

Downstream 100 bases:

>100_bases
GATCCGCGTTTCCCGAACGACTAATAACCGCCGACGCACTGCGTGCTCGGCGGTTTTTTCTTGCGCGGGCCGTTCGGCGC
TACGCTGCCGAAACGGCCGG

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MDLTQVSSSRAPRASGAAAPLLFDERPFLRRLSLVDWLFALALVAGAGFALARYHAHMDYYDTAVLIGTVPALVALGWRW
KPARLLMAAIAALSLVSLQLYHGDLARADSAFLLKYFLSSQSAILWMSALFVLATLFYWIGMLSRSETGGAIGQRLTWIA
VLMGFTGLMVRWYESYLIGADVGHIPVSNLYEVFVLFSLITALLYLYYEGHYGTRALGAFVLLVISAAVGFLMWYSIARD
AQQIQPLVPALQSWWMKIHVPANFIGYGSFALSAMVAVAYLSKERGVLADRLPALEVLDDVMYKSIAVGFAFFTIATILG
ALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGTVAAWWALTGLLVTTFAFLGVNMFLSGLHSYGKL

Sequences:

>Translated_396_residues
MDLTQVSSSRAPRASGAAAPLLFDERPFLRRLSLVDWLFALALVAGAGFALARYHAHMDYYDTAVLIGTVPALVALGWRW
KPARLLMAAIAALSLVSLQLYHGDLARADSAFLLKYFLSSQSAILWMSALFVLATLFYWIGMLSRSETGGAIGQRLTWIA
VLMGFTGLMVRWYESYLIGADVGHIPVSNLYEVFVLFSLITALLYLYYEGHYGTRALGAFVLLVISAAVGFLMWYSIARD
AQQIQPLVPALQSWWMKIHVPANFIGYGSFALSAMVAVAYLSKERGVLADRLPALEVLDDVMYKSIAVGFAFFTIATILG
ALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGTVAAWWALTGLLVTTFAFLGVNMFLSGLHSYGKL
>Mature_396_residues
MDLTQVSSSRAPRASGAAAPLLFDERPFLRRLSLVDWLFALALVAGAGFALARYHAHMDYYDTAVLIGTVPALVALGWRW
KPARLLMAAIAALSLVSLQLYHGDLARADSAFLLKYFLSSQSAILWMSALFVLATLFYWIGMLSRSETGGAIGQRLTWIA
VLMGFTGLMVRWYESYLIGADVGHIPVSNLYEVFVLFSLITALLYLYYEGHYGTRALGAFVLLVISAAVGFLMWYSIARD
AQQIQPLVPALQSWWMKIHVPANFIGYGSFALSAMVAVAYLSKERGVLADRLPALEVLDDVMYKSIAVGFAFFTIATILG
ALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGTVAAWWALTGLLVTTFAFLGVNMFLSGLHSYGKL

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 43903; Mature: 43903

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLTQVSSSRAPRASGAAAPLLFDERPFLRRLSLVDWLFALALVAGAGFALARYHAHMDY
CCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
YDTAVLIGTVPALVALGWRWKPARLLMAAIAALSLVSLQLYHGDLARADSAFLLKYFLSS
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHCHHHHHHHHHHCC
QSAILWMSALFVLATLFYWIGMLSRSETGGAIGQRLTWIAVLMGFTGLMVRWYESYLIGA
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DVGHIPVSNLYEVFVLFSLITALLYLYYEGHYGTRALGAFVLLVISAAVGFLMWYSIARD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQQIQPLVPALQSWWMKIHVPANFIGYGSFALSAMVAVAYLSKERGVLADRLPALEVLDD
HHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHH
VMYKSIAVGFAFFTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RGTVAAWWALTGLLVTTFAFLGVNMFLSGLHSYGKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDLTQVSSSRAPRASGAAAPLLFDERPFLRRLSLVDWLFALALVAGAGFALARYHAHMDY
CCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
YDTAVLIGTVPALVALGWRWKPARLLMAAIAALSLVSLQLYHGDLARADSAFLLKYFLSS
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHCHHHHHHHHHHCC
QSAILWMSALFVLATLFYWIGMLSRSETGGAIGQRLTWIAVLMGFTGLMVRWYESYLIGA
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DVGHIPVSNLYEVFVLFSLITALLYLYYEGHYGTRALGAFVLLVISAAVGFLMWYSIARD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQQIQPLVPALQSWWMKIHVPANFIGYGSFALSAMVAVAYLSKERGVLADRLPALEVLDD
HHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHH
VMYKSIAVGFAFFTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RGTVAAWWALTGLLVTTFAFLGVNMFLSGLHSYGKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA