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The map label for this gene is dapB [H]

Identifier: 237813820

GI number: 237813820

Start: 3475742

End: 3476548

Strand: Reverse

Name: dapB [H]

Synonym: GBP346_A3598

Alternate gene names: 237813820

Gene position: 3476548-3475742 (Counterclockwise)

Preceding gene: 237813821

Following gene: 237813819

Centisome position: 84.82

GC content: 69.52

Gene sequence:

>807_bases
ATGTCGTCCATGAAGATTGCGATTGCTGGGGCGTCCGGCCGGATGGGCCGGATGCTGATCGAAGCGGTGCTCGCCGCGCC
CGACGCGACGCTCGCCGGCGCGCTCGACCGCACGGGCTCGCCGCAGCTCGGCCAGGACGCGGGCGCGTTCCTCGGCAAGC
AGACCGGCGTCGCGCTCACCGACGACATCGAACGCGTGTGCGCCGAGGCCGATTACCTGATCGACTTCACGCGCCCCGAG
GGCACGCTCGCGCATCTGGATGCGGCGCTGCGCCACGACGTGAAGCTCGTGATCGGCACGACGGGCTTCAGCGAGCCGCA
GAAGGCGCAGCTGCGCGCGGCGGGCGGGAAGATCGCGCTCGTGTTCTCGGCGAACATGAGCGTCGGCGTGAACGTCACGA
TGAAGTTGCTCGAATTCGCGGCGAAGCAGTTCGCGCAGGGCTACGACATCGAGATCATCGAGGCGCATCACCGGCACAAG
GTCGACGCGCCGTCCGGCACCGCGCTGATGATGGGCGAGACGATCGCGGCGGCGACGGGCCGCACGCTCGACGATTGCGC
GGTCTACGGCCGCCACGGCGTGACGGGCGAGCGCGATCCGTCGACGATCGGTTTCTCGGCGATCCGCGGCGGCGACATCG
TCGGCGATCACACGGTGCTCTTCGCCGGCATCGGCGAGCGCATCGAGATCACGCACAAATCGGCGAGCCGCGTGTCGTAT
GCGCAAGGGGCGCTGCGCGCGGCGCGCTTCCTCGCCGGCCATCAGGCCGGTTTCTTCGACATGCAGGACGTGCTCGGCCT
GCGCTGA

Upstream 100 bases:

>100_bases
GCGTCCGGCGCGCAGGGAACGGGCGGCTGATCCGGCAGTCCGAGCCTAACCAGGGGCGGCGCGCGCCGCCCGTCTTTCAT
TCGTAGCAAGCAGGTAGCGC

Downstream 100 bases:

>100_bases
GCGCCCCGAGCGCCATTTCCGGGCATCGATGGCGACCCCGACCGGCATCCTCCACTACCTCGCAAGCGGCGACGCCGTCA
CGCACGCGGTCGCTTACGTG

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MSSMKIAIAGASGRMGRMLIEAVLAAPDATLAGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTRPE
GTLAHLDAALRHDVKLVIGTTGFSEPQKAQLRAAGGKIALVFSANMSVGVNVTMKLLEFAAKQFAQGYDIEIIEAHHRHK
VDAPSGTALMMGETIAAATGRTLDDCAVYGRHGVTGERDPSTIGFSAIRGGDIVGDHTVLFAGIGERIEITHKSASRVSY
AQGALRAARFLAGHQAGFFDMQDVLGLR

Sequences:

>Translated_268_residues
MSSMKIAIAGASGRMGRMLIEAVLAAPDATLAGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTRPE
GTLAHLDAALRHDVKLVIGTTGFSEPQKAQLRAAGGKIALVFSANMSVGVNVTMKLLEFAAKQFAQGYDIEIIEAHHRHK
VDAPSGTALMMGETIAAATGRTLDDCAVYGRHGVTGERDPSTIGFSAIRGGDIVGDHTVLFAGIGERIEITHKSASRVSY
AQGALRAARFLAGHQAGFFDMQDVLGLR
>Mature_267_residues
SSMKIAIAGASGRMGRMLIEAVLAAPDATLAGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTRPEG
TLAHLDAALRHDVKLVIGTTGFSEPQKAQLRAAGGKIALVFSANMSVGVNVTMKLLEFAAKQFAQGYDIEIIEAHHRHKV
DAPSGTALMMGETIAAATGRTLDDCAVYGRHGVTGERDPSTIGFSAIRGGDIVGDHTVLFAGIGERIEITHKSASRVSYA
QGALRAARFLAGHQAGFFDMQDVLGLR

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=268, Percent_Identity=57.8358208955224, Blast_Score=286, Evalue=1e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 28136; Mature: 28005

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSMKIAIAGASGRMGRMLIEAVLAAPDATLAGALDRTGSPQLGQDAGAFLGKQTGVALT
CCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHCCCCCCEEH
DDIERVCAEADYLIDFTRPEGTLAHLDAALRHDVKLVIGTTGFSEPQKAQLRAAGGKIAL
HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHCCCCEEEE
VFSANMSVGVNVTMKLLEFAAKQFAQGYDIEIIEAHHRHKVDAPSGTALMMGETIAAATG
EEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCHHHHCC
RTLDDCAVYGRHGVTGERDPSTIGFSAIRGGDIVGDHTVLFAGIGERIEITHKSASRVSY
CCHHHHHHHCCCCCCCCCCCCCCCHHEECCCCEECCCEEEEECCCCEEEEECCCCHHHHH
AQGALRAARFLAGHQAGFFDMQDVLGLR
HHHHHHHHHHHHCCCCCCCCHHHHHCCC
>Mature Secondary Structure 
SSMKIAIAGASGRMGRMLIEAVLAAPDATLAGALDRTGSPQLGQDAGAFLGKQTGVALT
CCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHCCCCCCEEH
DDIERVCAEADYLIDFTRPEGTLAHLDAALRHDVKLVIGTTGFSEPQKAQLRAAGGKIAL
HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHCCCCEEEE
VFSANMSVGVNVTMKLLEFAAKQFAQGYDIEIIEAHHRHKVDAPSGTALMMGETIAAATG
EEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCHHHHCC
RTLDDCAVYGRHGVTGERDPSTIGFSAIRGGDIVGDHTVLFAGIGERIEITHKSASRVSY
CCHHHHHHHCCCCCCCCCCCCCCCHHEECCCCEECCCEEEEECCCCEEEEECCCCHHHHH
AQGALRAARFLAGHQAGFFDMQDVLGLR
HHHHHHHHHHHHCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA