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The map label for this gene is rhaR [C]

Identifier: 237813774

GI number: 237813774

Start: 3436896

End: 3437831

Strand: Direct

Name: rhaR [C]

Synonym: GBP346_A3551

Alternate gene names: 237813774

Gene position: 3436896-3437831 (Clockwise)

Preceding gene: 237813771

Following gene: 237813779

Centisome position: 83.86

GC content: 69.12

Gene sequence:

>936_bases
TTGAGACAATATGCGTCGATAAATCTCAATTGCATGACCAATCGTCCCATGATCGACCGTCTGAAAGACCTCCTCGCGCG
TTTCGAACTGCACGCCCGCGTATTTCACTTCGGTGCGCTGCCCGGCGCGTCGACATTCGAGATTGGCGCGGACGGCTTCC
ATATGCACCTGGTGCGCACGGGGGCGGTCAACGTGACGGGCGAGGCGCTCGGGCGGCACGCGGTGCCCGAGCCGGGCGCG
GTGTTCATCGGGCGCCCCGGCAAGTACCGGATCGAGGCGCGCGGCGACGCGCCTGTCGAAGTCTTGTCCGCGGCGATCGA
ATTCGGGCTCGGCGATGAGAATCCGCTGTTGCGCGGCTTGCCCGATCTGCTCGCGATTCCGCTTGCGTCGATGTCGCCGC
TCGGCGGCGTCCAGCAGGCGCTCTTCGCGGAAGCGAGCGCGCCCGCGTGCGGGCATGACACGGTGATCAACCGGCTGACC
GAGGTGCTCGTCGTGCAGTTGCTGCGCTTCGTGATGCGCAACCGGCTGGTGGCGAGCGGATCGCTCGCCGGCCTGTCCGA
CGCGCGGCTCGCGAAGGCGTTGAACGCGATGCACGCGGATCCGGCGCTGCCGTGGTCGCTCGAGCGGATGGCTGCGATCG
CGGGCATGTCGCGCTCGCGGTTCGCCGCGCACTTCGCGGGCACGGTCGGCCTGCCGCCCGGCGAATACCTGCTCCAATGG
CGCGTCGGGCTCGCGAAGACGCTGCTCAGGCGCGGCTATGCGGTGAAGGAAATCGCGCCGGAAGTCGGCTACGGCAGCGC
GAGCGCGCTCACGCGCGCATTCGCGCAATCCACCGGGCAAGCGCCGACCGATTGGCTCGCGCGGGCGGGCGACGCACCTG
GCGCGATCGGAGCGGCAGCCGATTCGATGCCGGACGTCGGCGTGCGAGCCGCCTGA

Upstream 100 bases:

>100_bases
TTGGCCGGGTTCGGCGACGGGTGATAGAAGAAGCGGAGCATCGATTGGGCCCTCCTCGTCATGCTGGATAGTCAGCGGAA
TTGCCAATGTAGCGCACGTA

Downstream 100 bases:

>100_bases
GTGGACACCAAAAGGCTAAACGGGAGCGAAAGAGCGAAAGAGCGGAAAGGACGGTAAAACCGAAAGAAGGACGAACACTA
TCTCGACGCGCGATGCGCCG

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MRQYASINLNCMTNRPMIDRLKDLLARFELHARVFHFGALPGASTFEIGADGFHMHLVRTGAVNVTGEALGRHAVPEPGA
VFIGRPGKYRIEARGDAPVEVLSAAIEFGLGDENPLLRGLPDLLAIPLASMSPLGGVQQALFAEASAPACGHDTVINRLT
EVLVVQLLRFVMRNRLVASGSLAGLSDARLAKALNAMHADPALPWSLERMAAIAGMSRSRFAAHFAGTVGLPPGEYLLQW
RVGLAKTLLRRGYAVKEIAPEVGYGSASALTRAFAQSTGQAPTDWLARAGDAPGAIGAAADSMPDVGVRAA

Sequences:

>Translated_311_residues
MRQYASINLNCMTNRPMIDRLKDLLARFELHARVFHFGALPGASTFEIGADGFHMHLVRTGAVNVTGEALGRHAVPEPGA
VFIGRPGKYRIEARGDAPVEVLSAAIEFGLGDENPLLRGLPDLLAIPLASMSPLGGVQQALFAEASAPACGHDTVINRLT
EVLVVQLLRFVMRNRLVASGSLAGLSDARLAKALNAMHADPALPWSLERMAAIAGMSRSRFAAHFAGTVGLPPGEYLLQW
RVGLAKTLLRRGYAVKEIAPEVGYGSASALTRAFAQSTGQAPTDWLARAGDAPGAIGAAADSMPDVGVRAA
>Mature_311_residues
MRQYASINLNCMTNRPMIDRLKDLLARFELHARVFHFGALPGASTFEIGADGFHMHLVRTGAVNVTGEALGRHAVPEPGA
VFIGRPGKYRIEARGDAPVEVLSAAIEFGLGDENPLLRGLPDLLAIPLASMSPLGGVQQALFAEASAPACGHDTVINRLT
EVLVVQLLRFVMRNRLVASGSLAGLSDARLAKALNAMHADPALPWSLERMAAIAGMSRSRFAAHFAGTVGLPPGEYLLQW
RVGLAKTLLRRGYAVKEIAPEVGYGSASALTRAFAQSTGQAPTDWLARAGDAPGAIGAAADSMPDVGVRAA

Specific function: Activator Of The L-Rhamnose Operon. Rhar Putatively Autoregulates Its Synthesis. [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32819; Mature: 32819

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQYASINLNCMTNRPMIDRLKDLLARFELHARVFHFGALPGASTFEIGADGFHMHLVRT
CCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEEEE
GAVNVTGEALGRHAVPEPGAVFIGRPGKYRIEARGDAPVEVLSAAIEFGLGDENPLLRGL
CCCEECHHHHCCCCCCCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHCCCCCCCHHHCC
PDLLAIPLASMSPLGGVQQALFAEASAPACGHDTVINRLTEVLVVQLLRFVMRNRLVASG
HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEECCC
SLAGLSDARLAKALNAMHADPALPWSLERMAAIAGMSRSRFAAHFAGTVGLPPGEYLLQW
CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHH
RVGLAKTLLRRGYAVKEIAPEVGYGSASALTRAFAQSTGQAPTDWLARAGDAPGAIGAAA
HHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCC
DSMPDVGVRAA
CCCCCCCCCCC
>Mature Secondary Structure
MRQYASINLNCMTNRPMIDRLKDLLARFELHARVFHFGALPGASTFEIGADGFHMHLVRT
CCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEEEE
GAVNVTGEALGRHAVPEPGAVFIGRPGKYRIEARGDAPVEVLSAAIEFGLGDENPLLRGL
CCCEECHHHHCCCCCCCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHCCCCCCCHHHCC
PDLLAIPLASMSPLGGVQQALFAEASAPACGHDTVINRLTEVLVVQLLRFVMRNRLVASG
HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEECCC
SLAGLSDARLAKALNAMHADPALPWSLERMAAIAGMSRSRFAAHFAGTVGLPPGEYLLQW
CCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHH
RVGLAKTLLRRGYAVKEIAPEVGYGSASALTRAFAQSTGQAPTDWLARAGDAPGAIGAAA
HHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCC
DSMPDVGVRAA
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1332944 [H]