| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is foxA [H]
Identifier: 237813559
GI number: 237813559
Start: 3218018
End: 3220306
Strand: Reverse
Name: foxA [H]
Synonym: GBP346_A3335
Alternate gene names: 237813559
Gene position: 3220306-3218018 (Counterclockwise)
Preceding gene: 237813561
Following gene: 237813558
Centisome position: 78.57
GC content: 72.87
Gene sequence:
>2289_bases ATGAGCCGGGCGCCGCATGCACCGTCGCGCCGTCGCGCGTTCGGGCGCGGGTTCGCGGCGGCTGCTCGCGCCGCTCACGG CGCGCCTGTCGCGCCTGTCGCGCATGGCGCGCATGGCGCGCACGCGTGCTTCGCCGCCGCGTCGCGTCGCTCGACGGCCG TCGAGCGCTGCGTCACCGCGCTCGCGTGCGCGGTGACGGCGTCCGGCGCGCTCGCCGCCGAGGCGGAACCGGCCGACGCC GCGCGCGGCCCGCATCGCGAACTGCCGACCGTGCGCGTGACGAGCGACGGGGCGCACGCATCGCCGCTGTCCACGCCGCT CGCGGCCGGCTCGCGCCTGAAGCTCGCGAGCCTCGACACGCCCGCGAGCGTCGAGGCGATCACCTCCGCGCAGATCGCCG CGCGCGGCGATCGCACGATCGTCGACGCCGTCACGCGCGCGACGGGCTTCAGCACGGCCGCAGCGCCCGGCAACGGCGGC ACGGCGCTCAGCGTGCGCGGCTTCGCCGGCCAGGAATCGGTGACGACGCTTGTCGACGGCGTGCGCCTCTACCCCGGCGC GGGCACCGTCACGTTCCCGTTCTCGACGTGGTCCGCCGAGCGCATCGAGGTGCTGCGCGGGCCGGCGTCGGTGCTGTACG GCGAAGGGGCGATCGGCGGCGTCGCCAACGTCGTGACCCGGCGCCCGCGCCGCGAACGCTCGACGACGCTGCAGGCGGGC ATCGGCACGCAAGGCGAAAAGCGCGTGGCGCTCGATACGGCGGGCGCGCTCGGCCCGCGTCTTTCCTATCGTTTCCATCT GAGCGACGAGCGCGCGCGCGGCTTCGTCGAGCGCGGCGACGCGCACGTGACGGCTGTCGGCGGCGCGCTGAAGCTCGATG TCGATTCGCGTCTGTCGATCACGCTCGATTACGACTACGGCCGCCAGAAGCCGGCGACCTATTTCGGCGTGCCGGCGACG AACGGCGTGCTCGAGCGTGCGCTGCGCGAGCGCAACTACAACGTCGGCGACGCGACGATCGCATACCACGACACCTGGAC GCGGCTTGCCGCGACCTATCGCGCGGGCAACGGCGTGACGCTCGATGCCCAGCTCTACTATCTCGCGACGCGCCGCCATT GGCGCAACGCGGAATCGTACGCGCTCGACCCGGCGGCGCGCACCGTCGCGCGCAGCGATTATCTCGAGATCTTCCATCGC GAGCGGCAGTTCGGCGAGCGCTTCACCGCACGCATCGACTCGCGCGTGTTCGGCCGCGCGAACCGGCTCGTGCTCGGCGC CGAGTTCAACCAGATCGCGTTCGACGGCGCGAACAACGCGCCGTATCGCGGCGAATCGACCGTCGCCGCCGCCGGCTTCG ATCCCGGCGCGTTCGCGAGCCCCGATCCGACGCTGCCGCGCTTTCGCACGCGCACGCATCAGGCCGCGGCGTTCATCGAG AACCGGCTCGAGGTCCTGCCGCGGCTCGCGTGGGTGAGCGGGCTGCGTTACGACCATCTGTCGTTTCATCGCGACGATCT GATCGCGGGCGGCGCGTTCGACAAGACGTTCGCGCACACCGGCTGGCGCAGCGGGCTCGTCTACGAGATCGCGCCGGGTC TCGCCGCGTACGCGCAGTACACGACGGGTGCGCAGGGCGTGGGCTCGCTCGTCACGCTGTCGGCGTCGCAGGCGAACTAC ACGCTCGCGACCGGGCGTCAATGGGAAGCGGGCATCAAGCACGAGATCGACGGCGCTCGCGCGTACTGGACGCTCGCCGT CTACGACATCGTCAAGCGCGGCCTCGTCAGCGTCGATCCGCTGAATCCGGCGCGCGCGCAGCAGATCGGCCGCCAGTCGT CGCGCGGCGTCGAGCTCGCGGGCGGCGTGCGGCTGCCGGGCGGCGTGACGGTCGACGCAAACGCGGCGTTGCTGCGCGCG CGCTACGACGCGTTCGACCAGCGCGTCGGCGACACGGTCGTGCAGCGCGCCGGCAACGTGCCGCACGACATCGCGCAGCA GAGCGCGAACCTGTGGATCGGCTGGGCGTTCGCGCCCGGCTGGCGCGCGAACGCGGGCCTGCGCTACGTCGGTCCCCGCT ACGGCGACGACGCGAACCGCGTGCCGGTGCCTTCTTACACGGTGTTCGACGCGTCGCTCGCGTGGCAGGCGACGCGCGAC GTCGACCTCGCGCTCTATGCGCGCAACCTCGCGAACCGCACGTACGCGGCGTCGACGTCGAACGGCGGCGCGCAATGGCT GCTCGGCCCGTCGCGCTCGGTCGAGCTCGTCGCGACGCTGCGCTTCTAG
Upstream 100 bases:
>100_bases GAGCGAAGCGGGCGGGAAACGTTCGGAGCCACGCGGCGCCGACGACAGTGGAGCGTGCGGCGTGCGCTCGGGCGTGGGCG GTGGACGAGGCGATCCGCCG
Downstream 100 bases:
>100_bases CCCGGCGGCGCATCCCGACGCTCGACGACGCACGCATGCCCATGTCCGCGACCCTCGACATCGAACGCCTGAACTGGTCG CCCGCCGGCGCGGGCGCGTT
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 762; Mature: 761
Protein sequence:
>762_residues MSRAPHAPSRRRAFGRGFAAAARAAHGAPVAPVAHGAHGAHACFAAASRRSTAVERCVTALACAVTASGALAAEAEPADA ARGPHRELPTVRVTSDGAHASPLSTPLAAGSRLKLASLDTPASVEAITSAQIAARGDRTIVDAVTRATGFSTAAAPGNGG TALSVRGFAGQESVTTLVDGVRLYPGAGTVTFPFSTWSAERIEVLRGPASVLYGEGAIGGVANVVTRRPRRERSTTLQAG IGTQGEKRVALDTAGALGPRLSYRFHLSDERARGFVERGDAHVTAVGGALKLDVDSRLSITLDYDYGRQKPATYFGVPAT NGVLERALRERNYNVGDATIAYHDTWTRLAATYRAGNGVTLDAQLYYLATRRHWRNAESYALDPAARTVARSDYLEIFHR ERQFGERFTARIDSRVFGRANRLVLGAEFNQIAFDGANNAPYRGESTVAAAGFDPGAFASPDPTLPRFRTRTHQAAAFIE NRLEVLPRLAWVSGLRYDHLSFHRDDLIAGGAFDKTFAHTGWRSGLVYEIAPGLAAYAQYTTGAQGVGSLVTLSASQANY TLATGRQWEAGIKHEIDGARAYWTLAVYDIVKRGLVSVDPLNPARAQQIGRQSSRGVELAGGVRLPGGVTVDANAALLRA RYDAFDQRVGDTVVQRAGNVPHDIAQQSANLWIGWAFAPGWRANAGLRYVGPRYGDDANRVPVPSYTVFDASLAWQATRD VDLALYARNLANRTYAASTSNGGAQWLLGPSRSVELVATLRF
Sequences:
>Translated_762_residues MSRAPHAPSRRRAFGRGFAAAARAAHGAPVAPVAHGAHGAHACFAAASRRSTAVERCVTALACAVTASGALAAEAEPADA ARGPHRELPTVRVTSDGAHASPLSTPLAAGSRLKLASLDTPASVEAITSAQIAARGDRTIVDAVTRATGFSTAAAPGNGG TALSVRGFAGQESVTTLVDGVRLYPGAGTVTFPFSTWSAERIEVLRGPASVLYGEGAIGGVANVVTRRPRRERSTTLQAG IGTQGEKRVALDTAGALGPRLSYRFHLSDERARGFVERGDAHVTAVGGALKLDVDSRLSITLDYDYGRQKPATYFGVPAT NGVLERALRERNYNVGDATIAYHDTWTRLAATYRAGNGVTLDAQLYYLATRRHWRNAESYALDPAARTVARSDYLEIFHR ERQFGERFTARIDSRVFGRANRLVLGAEFNQIAFDGANNAPYRGESTVAAAGFDPGAFASPDPTLPRFRTRTHQAAAFIE NRLEVLPRLAWVSGLRYDHLSFHRDDLIAGGAFDKTFAHTGWRSGLVYEIAPGLAAYAQYTTGAQGVGSLVTLSASQANY TLATGRQWEAGIKHEIDGARAYWTLAVYDIVKRGLVSVDPLNPARAQQIGRQSSRGVELAGGVRLPGGVTVDANAALLRA RYDAFDQRVGDTVVQRAGNVPHDIAQQSANLWIGWAFAPGWRANAGLRYVGPRYGDDANRVPVPSYTVFDASLAWQATRD VDLALYARNLANRTYAASTSNGGAQWLLGPSRSVELVATLRF >Mature_761_residues SRAPHAPSRRRAFGRGFAAAARAAHGAPVAPVAHGAHGAHACFAAASRRSTAVERCVTALACAVTASGALAAEAEPADAA RGPHRELPTVRVTSDGAHASPLSTPLAAGSRLKLASLDTPASVEAITSAQIAARGDRTIVDAVTRATGFSTAAAPGNGGT ALSVRGFAGQESVTTLVDGVRLYPGAGTVTFPFSTWSAERIEVLRGPASVLYGEGAIGGVANVVTRRPRRERSTTLQAGI GTQGEKRVALDTAGALGPRLSYRFHLSDERARGFVERGDAHVTAVGGALKLDVDSRLSITLDYDYGRQKPATYFGVPATN GVLERALRERNYNVGDATIAYHDTWTRLAATYRAGNGVTLDAQLYYLATRRHWRNAESYALDPAARTVARSDYLEIFHRE RQFGERFTARIDSRVFGRANRLVLGAEFNQIAFDGANNAPYRGESTVAAAGFDPGAFASPDPTLPRFRTRTHQAAAFIEN RLEVLPRLAWVSGLRYDHLSFHRDDLIAGGAFDKTFAHTGWRSGLVYEIAPGLAAYAQYTTGAQGVGSLVTLSASQANYT LATGRQWEAGIKHEIDGARAYWTLAVYDIVKRGLVSVDPLNPARAQQIGRQSSRGVELAGGVRLPGGVTVDANAALLRAR YDAFDQRVGDTVVQRAGNVPHDIAQQSANLWIGWAFAPGWRANAGLRYVGPRYGDDANRVPVPSYTVFDASLAWQATRDV DLALYARNLANRTYAASTSNGGAQWLLGPSRSVELVATLRF
Specific function: Ferrioxamine binding and uptake, in association with the tonB protein [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=703, Percent_Identity=24.4665718349929, Blast_Score=133, Evalue=5e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 81308; Mature: 81176
Theoretical pI: Translated: 10.11; Mature: 10.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.1 %Met (Translated Protein) 0.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRAPHAPSRRRAFGRGFAAAARAAHGAPVAPVAHGAHGAHACFAAASRRSTAVERCVTA CCCCCCCCHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH LACAVTASGALAAEAEPADAARGPHRELPTVRVTSDGAHASPLSTPLAAGSRLKLASLDT HHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHCCCCEEEEEECCC PASVEAITSAQIAARGDRTIVDAVTRATGFSTAAAPGNGGTALSVRGFAGQESVTTLVDG CCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCC VRLYPGAGTVTFPFSTWSAERIEVLRGPASVLYGEGAIGGVANVVTRRPRRERSTTLQAG EEEECCCCEEEEECCCCCHHHHHHHCCCHHEEECCCCCCHHHHHHHCCCCHHHHCEEEEC IGTQGEKRVALDTAGALGPRLSYRFHLSDERARGFVERGDAHVTAVGGALKLDVDSRLSI CCCCCCCEEEEECCCCCCCCEEEEEECCCHHHCCHHHCCCEEEEEECCEEEEECCCCEEE TLDYDYGRQKPATYFGVPATNGVLERALRERNYNVGDATIAYHDTWTRLAATYRAGNGVT EEECCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHEECCCCEE LDAQLYYLATRRHWRNAESYALDPAARTVARSDYLEIFHRERQFGERFTARIDSRVFGRA EEEEEEEEEHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC NRLVLGAEFNQIAFDGANNAPYRGESTVAAAGFDPGAFASPDPTLPRFRTRTHQAAAFIE CEEEEECCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH NRLEVLPRLAWVSGLRYDHLSFHRDDLIAGGAFDKTFAHTGWRSGLVYEIAPGLAAYAQY HHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHCCCCCCEEEEECCCHHHHHHH TTGAQGVGSLVTLSASQANYTLATGRQWEAGIKHEIDGARAYWTLAVYDIVKRGLVSVDP CCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCC LNPARAQQIGRQSSRGVELAGGVRLPGGVTVDANAALLRARYDAFDQRVGDTVVQRAGNV CCHHHHHHHCCCCCCCEEEECCEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCC PHDIAQQSANLWIGWAFAPGWRANAGLRYVGPRYGDDANRVPVPSYTVFDASLAWQATRD CHHHHHCCCCEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCEEECCCCC VDLALYARNLANRTYAASTSNGGAQWLLGPSRSVELVATLRF CHHHHHHHHHCCCEEEECCCCCCEEEEECCCCCEEEEEEECC >Mature Secondary Structure SRAPHAPSRRRAFGRGFAAAARAAHGAPVAPVAHGAHGAHACFAAASRRSTAVERCVTA CCCCCCCHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH LACAVTASGALAAEAEPADAARGPHRELPTVRVTSDGAHASPLSTPLAAGSRLKLASLDT HHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHCCCCEEEEEECCC PASVEAITSAQIAARGDRTIVDAVTRATGFSTAAAPGNGGTALSVRGFAGQESVTTLVDG CCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCC VRLYPGAGTVTFPFSTWSAERIEVLRGPASVLYGEGAIGGVANVVTRRPRRERSTTLQAG EEEECCCCEEEEECCCCCHHHHHHHCCCHHEEECCCCCCHHHHHHHCCCCHHHHCEEEEC IGTQGEKRVALDTAGALGPRLSYRFHLSDERARGFVERGDAHVTAVGGALKLDVDSRLSI CCCCCCCEEEEECCCCCCCCEEEEEECCCHHHCCHHHCCCEEEEEECCEEEEECCCCEEE TLDYDYGRQKPATYFGVPATNGVLERALRERNYNVGDATIAYHDTWTRLAATYRAGNGVT EEECCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHEECCCCEE LDAQLYYLATRRHWRNAESYALDPAARTVARSDYLEIFHRERQFGERFTARIDSRVFGRA EEEEEEEEEHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC NRLVLGAEFNQIAFDGANNAPYRGESTVAAAGFDPGAFASPDPTLPRFRTRTHQAAAFIE CEEEEECCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH NRLEVLPRLAWVSGLRYDHLSFHRDDLIAGGAFDKTFAHTGWRSGLVYEIAPGLAAYAQY HHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHCCCCCCEEEEECCCHHHHHHH TTGAQGVGSLVTLSASQANYTLATGRQWEAGIKHEIDGARAYWTLAVYDIVKRGLVSVDP CCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCCCC LNPARAQQIGRQSSRGVELAGGVRLPGGVTVDANAALLRARYDAFDQRVGDTVVQRAGNV CCHHHHHHHCCCCCCCEEEECCEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCC PHDIAQQSANLWIGWAFAPGWRANAGLRYVGPRYGDDANRVPVPSYTVFDASLAWQATRD CHHHHHCCCCEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCEEECCCCC VDLALYARNLANRTYAASTSNGGAQWLLGPSRSVELVATLRF CHHHHHHHHHCCCEEEECCCCCCEEEEECCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1640832 [H]