| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237813550
Identifier: 237813550
GI number: 237813550
Start: 3208742
End: 3210964
Strand: Reverse
Name: 237813550
Synonym: GBP346_A3326
Alternate gene names: NA
Gene position: 3210964-3208742 (Counterclockwise)
Preceding gene: 237813551
Following gene: 237813548
Centisome position: 78.34
GC content: 71.93
Gene sequence:
>2223_bases GTGACGGCGATGCGCGGGCGGCGCAGCGACGCCGCCCGCCGCGCGCGCCGGCCGTGCCTGGGCGCGGCGCGCGCCGCCCG GCGAGCGGGCGATTCGAACCCATCAGGCGGACTGGGGGCAACCATGACGGCGATCAGGGGCGGATCGAGGCGCGCGCCGG GGCTGGCGCTCGCGCTTCTCGGCGGTGTGCTGCTCGGCGCGTGCCACGGCGACGAAAACGCGCAGGTGAACGCGCTGCCC GGCTTCGTTTCGGGCAGCGTGCGCAAGACGGCCTACGACGGCGCGAGCGACGATCTGCTGACCGCGGGGCTCGGCAAGAC GGGCCTCGGCAGCGACACGCGGCCCGGCTTCGCGAATCCCGCGCAGCCGAGCGCCGCGGAGTTGCGGCGCCTCGCGATCT ACTCGAACTACCGGGCGCTCGTCGACATCACGCCGAACGGCGGCTACGGGCGCTTCTGGGGGCCGAACGTCGACCTCGCG GGCAACGACACCCTCGGCGAGGGCAAGATCGCCGGCACCGAATATCTCGCGTATTCCGACGACGGCAGCGGCCGCAAGAA CGTCACGCTGCTCGTGCAGGTGCCGGCGAGCTTCGATCCGGCGAATCCGTGCATCGTGACGGCGACGGCGTCGGGCTCGC GCGGCGTGTACGGCGCGATCGCCGCGGCGGGCGAGTGGGGGCTCAAGCGCGGCTGCGCGGTCGCGTACAACGACAAGGGC GGCGGCAACGGCGCGCACGAGATCGGCACGGGCGTCGTCACGCTGATCGACGGCACGCTCGCCACCGCGTCGAGCGCGGG CAGCTCGAGCCTGTTTACCGCGAGCGAATCGAGCAGCACGCTCGCCGCGTTCAACAGCGCGTTTCCGAACCGCTACGCCT ACAAGCACGCGCATTCGCAGCAGAACCCCGAGCAGGACTGGGGGCGCGTGACGCTGCAGGCGGTCGAGTTCGCGTACTGG GCGCTGAACGAGCAGTTCGGCCCGGTCGTCGACGGCACGCGGCACGGCATCCGCTATCGGCCGGGCGACATCACGACGAT CGCCGCGTCGGTCAGCAACGGCGGCGGGTCCGCGCTCGCGGCGGCCGAGCAGGACACGCGCGGCTGGATCACCGCGGTCG TCGTCGGCGAGCCGCAGATCAACGTGCGCATGACGCCAGGCGTGACGGTCGAGCAGGGCGGCGCGCCCGTGCCGTCGTTC GGCCGGCCGCTCGCCGATTACGCGACGCTCGCGAACCTGCTGCAACCGTGCGCGGCGGCGGCCGTCGCCGCGACGGGCGC GCCGTACCTCAGTGCGCTGCCCATGGGCGTCACGCAGTCGATTCGCACGCAGCGCTGCGCGACGCTCGCGGCGGCGGGGC TCGTGTCGGGCGCCGATACGGCGAGCCAGGCGAGCGACGCGCTCGCGCAACTGCACGCGGCCGGCTATCTCGCGGATTCC GATCTGCTGCAGGCGCCGATGTGGGATTCGCAGGCGATGCCGGCGATCGCCGTCACGTATGCGAACGCGTACACGCGTTC GCGCGTCACCGATAACCTCTGCAATTTCAGCTTCGCGACGACGAACCCGGTGACGGGCGCCGTCGCTGCGCCCGCCGTCT CGCCGATGACGAACCTGTTCGGCGCGGGCAACGGCGTGCCGCCGACGAACGGGATCAATCTCGTGTTCAACGGCGCGTCG GGCGGCGTCGACCACCGGCTCGCGACGCCGGACGCGAGCTTCGCGGGCGCGTTCTGCCTGCGCCAGCTGTGGACCGCGAA CCAGCTCGGCATCGGCACGAATGTCGACGCCGTGCGCGTGGCCGCCAATCTGCAGCACAAGCCGGCGATCATCGTGCACG GCCGCAGCGATGCGCTCGTGCCCGTCAACCACGCGTCGCGCGCGTATGTCGCGCAAAACAGCGCGACCGAAGGCCGCGCG AGCCAACTGTCGTTCTACGAGGTGACGAACGGCCAGCACTTCGACGCGTTCCTGTCGGTGCCCGGCTTCGATACGCGCTT CGTGCCGGTTCACTACTACGACGAACAGGCGCTCAATCTGATGTGGAATCACTTGAAGAGCGGCGCGCCGCTGCCGCCGT CGCAGGTGATCCGCACGGTGCCGCGCGGCGGCGTGCCGGGCGCAGCGCCCGCGCTGTCGACGGCGAACCTGCCGCCGATC GTCCAGTCGCCGGGCGCGAACGCGATCGCCGTGAACGCGGGGGTCATCGACGTGCCGCTCTGA
Upstream 100 bases:
>100_bases GCTCGGTGCCGGACGCGTCGCAGATCGACAAGGCGGTCGAGGCGGCGAAGGGCGTCGCGGGCGTGGTGTCGGTCAACAAC AAGCTGTCCGTGCAGCCGCA
Downstream 100 bases:
>100_bases CGCGCCGCATCCGCCCGCCGGTCGCGACGGCTGGCCCGCACGCACGTGCGGCCAGCCGTTTTTTCATCGCCCGGCGCGTT TTCTTTGCGCCGGCGCGATT
Product: hypothetical protein
Products: NA
Alternate protein names: 3HB-oligomer hydrolase; 3HBOH [H]
Number of amino acids: Translated: 740; Mature: 739
Protein sequence:
>740_residues MTAMRGRRSDAARRARRPCLGAARAARRAGDSNPSGGLGATMTAIRGGSRRAPGLALALLGGVLLGACHGDENAQVNALP GFVSGSVRKTAYDGASDDLLTAGLGKTGLGSDTRPGFANPAQPSAAELRRLAIYSNYRALVDITPNGGYGRFWGPNVDLA GNDTLGEGKIAGTEYLAYSDDGSGRKNVTLLVQVPASFDPANPCIVTATASGSRGVYGAIAAAGEWGLKRGCAVAYNDKG GGNGAHEIGTGVVTLIDGTLATASSAGSSSLFTASESSSTLAAFNSAFPNRYAYKHAHSQQNPEQDWGRVTLQAVEFAYW ALNEQFGPVVDGTRHGIRYRPGDITTIAASVSNGGGSALAAAEQDTRGWITAVVVGEPQINVRMTPGVTVEQGGAPVPSF GRPLADYATLANLLQPCAAAAVAATGAPYLSALPMGVTQSIRTQRCATLAAAGLVSGADTASQASDALAQLHAAGYLADS DLLQAPMWDSQAMPAIAVTYANAYTRSRVTDNLCNFSFATTNPVTGAVAAPAVSPMTNLFGAGNGVPPTNGINLVFNGAS GGVDHRLATPDASFAGAFCLRQLWTANQLGIGTNVDAVRVAANLQHKPAIIVHGRSDALVPVNHASRAYVAQNSATEGRA SQLSFYEVTNGQHFDAFLSVPGFDTRFVPVHYYDEQALNLMWNHLKSGAPLPPSQVIRTVPRGGVPGAAPALSTANLPPI VQSPGANAIAVNAGVIDVPL
Sequences:
>Translated_740_residues MTAMRGRRSDAARRARRPCLGAARAARRAGDSNPSGGLGATMTAIRGGSRRAPGLALALLGGVLLGACHGDENAQVNALP GFVSGSVRKTAYDGASDDLLTAGLGKTGLGSDTRPGFANPAQPSAAELRRLAIYSNYRALVDITPNGGYGRFWGPNVDLA GNDTLGEGKIAGTEYLAYSDDGSGRKNVTLLVQVPASFDPANPCIVTATASGSRGVYGAIAAAGEWGLKRGCAVAYNDKG GGNGAHEIGTGVVTLIDGTLATASSAGSSSLFTASESSSTLAAFNSAFPNRYAYKHAHSQQNPEQDWGRVTLQAVEFAYW ALNEQFGPVVDGTRHGIRYRPGDITTIAASVSNGGGSALAAAEQDTRGWITAVVVGEPQINVRMTPGVTVEQGGAPVPSF GRPLADYATLANLLQPCAAAAVAATGAPYLSALPMGVTQSIRTQRCATLAAAGLVSGADTASQASDALAQLHAAGYLADS DLLQAPMWDSQAMPAIAVTYANAYTRSRVTDNLCNFSFATTNPVTGAVAAPAVSPMTNLFGAGNGVPPTNGINLVFNGAS GGVDHRLATPDASFAGAFCLRQLWTANQLGIGTNVDAVRVAANLQHKPAIIVHGRSDALVPVNHASRAYVAQNSATEGRA SQLSFYEVTNGQHFDAFLSVPGFDTRFVPVHYYDEQALNLMWNHLKSGAPLPPSQVIRTVPRGGVPGAAPALSTANLPPI VQSPGANAIAVNAGVIDVPL >Mature_739_residues TAMRGRRSDAARRARRPCLGAARAARRAGDSNPSGGLGATMTAIRGGSRRAPGLALALLGGVLLGACHGDENAQVNALPG FVSGSVRKTAYDGASDDLLTAGLGKTGLGSDTRPGFANPAQPSAAELRRLAIYSNYRALVDITPNGGYGRFWGPNVDLAG NDTLGEGKIAGTEYLAYSDDGSGRKNVTLLVQVPASFDPANPCIVTATASGSRGVYGAIAAAGEWGLKRGCAVAYNDKGG GNGAHEIGTGVVTLIDGTLATASSAGSSSLFTASESSSTLAAFNSAFPNRYAYKHAHSQQNPEQDWGRVTLQAVEFAYWA LNEQFGPVVDGTRHGIRYRPGDITTIAASVSNGGGSALAAAEQDTRGWITAVVVGEPQINVRMTPGVTVEQGGAPVPSFG RPLADYATLANLLQPCAAAAVAATGAPYLSALPMGVTQSIRTQRCATLAAAGLVSGADTASQASDALAQLHAAGYLADSD LLQAPMWDSQAMPAIAVTYANAYTRSRVTDNLCNFSFATTNPVTGAVAAPAVSPMTNLFGAGNGVPPTNGINLVFNGASG GVDHRLATPDASFAGAFCLRQLWTANQLGIGTNVDAVRVAANLQHKPAIIVHGRSDALVPVNHASRAYVAQNSATEGRAS QLSFYEVTNGQHFDAFLSVPGFDTRFVPVHYYDEQALNLMWNHLKSGAPLPPSQVIRTVPRGGVPGAAPALSTANLPPIV QSPGANAIAVNAGVIDVPL
Specific function: Participates in the degradation of poly-3- hydroxybutyrate (PHB). It works downstream of poly(3- hydroxybutyrate) depolymerase, hydrolyzing D(-)-3-hydroxybutyrate oligomers of various length (3HB-oligomers) into 3HB-monomers [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the D-(-)-3-hydroxybutyrate oligomer hydrolase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016582 [H]
Pfam domain/function: PF10605 3HBOH [H]
EC number: =3.1.1.22 [H]
Molecular weight: Translated: 75888; Mature: 75756
Theoretical pI: Translated: 8.02; Mature: 8.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAMRGRRSDAARRARRPCLGAARAARRAGDSNPSGGLGATMTAIRGGSRRAPGLALALL CCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHH GGVLLGACHGDENAQVNALPGFVSGSVRKTAYDGASDDLLTAGLGKTGLGSDTRPGFANP HHHHEEEECCCCCCEEECCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCCCCCCCCC AQPSAAELRRLAIYSNYRALVDITPNGGYGRFWGPNVDLAGNDTLGEGKIAGTEYLAYSD CCCCHHHHHHHHHEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC DGSGRKNVTLLVQVPASFDPANPCIVTATASGSRGVYGAIAAAGEWGLKRGCAVAYNDKG CCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCEEEECCCC GGNGAHEIGTGVVTLIDGTLATASSAGSSSLFTASESSSTLAAFNSAFPNRYAYKHAHSQ CCCCHHHHCCCEEEEECCCHHHCCCCCCCCEEEECCCCCHHHHHHHCCCCCHHHHHHHCC QNPEQDWGRVTLQAVEFAYWALNEQFGPVVDGTRHGIRYRPGDITTIAASVSNGGGSALA CCCCHHHHHEEHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCEEEEEEEECCCCCCEEE AAEQDTRGWITAVVVGEPQINVRMTPGVTVEQGGAPVPSFGRPLADYATLANLLQPCAAA ECCCCCCCEEEEEEECCCCEEEEECCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH AVAATGAPYLSALPMGVTQSIRTQRCATLAAAGLVSGADTASQASDALAQLHAAGYLADS HHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC DLLQAPMWDSQAMPAIAVTYANAYTRSRVTDNLCNFSFATTNPVTGAVAAPAVSPMTNLF HHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCEEECCCCCCCCHHCCCHHHHHHHH GAGNGVPPTNGINLVFNGASGGVDHRLATPDASFAGAFCLRQLWTANQLGIGTNVDAVRV CCCCCCCCCCCCEEEEECCCCCCCCEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHEEE AANLQHKPAIIVHGRSDALVPVNHASRAYVAQNSATEGRASQLSFYEVTNGQHFDAFLSV EECCCCCCEEEEECCCCCEEECCCCCCEEEECCCCCCCCHHEEEEEEECCCCCEEEEEEC PGFDTRFVPVHYYDEQALNLMWNHLKSGAPLPPSQVIRTVPRGGVPGAAPALSTANLPPI CCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC VQSPGANAIAVNAGVIDVPL EECCCCCEEEEECCEEECCC >Mature Secondary Structure TAMRGRRSDAARRARRPCLGAARAARRAGDSNPSGGLGATMTAIRGGSRRAPGLALALL CCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHH GGVLLGACHGDENAQVNALPGFVSGSVRKTAYDGASDDLLTAGLGKTGLGSDTRPGFANP HHHHEEEECCCCCCEEECCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCCCCCCCCC AQPSAAELRRLAIYSNYRALVDITPNGGYGRFWGPNVDLAGNDTLGEGKIAGTEYLAYSD CCCCHHHHHHHHHEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC DGSGRKNVTLLVQVPASFDPANPCIVTATASGSRGVYGAIAAAGEWGLKRGCAVAYNDKG CCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCEEEECCCC GGNGAHEIGTGVVTLIDGTLATASSAGSSSLFTASESSSTLAAFNSAFPNRYAYKHAHSQ CCCCHHHHCCCEEEEECCCHHHCCCCCCCCEEEECCCCCHHHHHHHCCCCCHHHHHHHCC QNPEQDWGRVTLQAVEFAYWALNEQFGPVVDGTRHGIRYRPGDITTIAASVSNGGGSALA CCCCHHHHHEEHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCEEEEEEEECCCCCCEEE AAEQDTRGWITAVVVGEPQINVRMTPGVTVEQGGAPVPSFGRPLADYATLANLLQPCAAA ECCCCCCCEEEEEEECCCCEEEEECCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH AVAATGAPYLSALPMGVTQSIRTQRCATLAAAGLVSGADTASQASDALAQLHAAGYLADS HHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC DLLQAPMWDSQAMPAIAVTYANAYTRSRVTDNLCNFSFATTNPVTGAVAAPAVSPMTNLF HHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCEEECCCCCCCCHHCCCHHHHHHHH GAGNGVPPTNGINLVFNGASGGVDHRLATPDASFAGAFCLRQLWTANQLGIGTNVDAVRV CCCCCCCCCCCCEEEEECCCCCCCCEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHEEE AANLQHKPAIIVHGRSDALVPVNHASRAYVAQNSATEGRASQLSFYEVTNGQHFDAFLSV EECCCCCCEEEEECCCCCEEECCCCCCEEEECCCCCCCCHHEEEEEEECCCCCEEEEEEC PGFDTRFVPVHYYDEQALNLMWNHLKSGAPLPPSQVIRTVPRGGVPGAAPALSTANLPPI CCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC VQSPGANAIAVNAGVIDVPL EECCCCCEEEEECCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA