| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237813547
Identifier: 237813547
GI number: 237813547
Start: 3206289
End: 3208136
Strand: Reverse
Name: 237813547
Synonym: GBP346_A3323
Alternate gene names: NA
Gene position: 3208136-3206289 (Counterclockwise)
Preceding gene: 237813548
Following gene: 237813538
Centisome position: 78.27
GC content: 65.48
Gene sequence:
>1848_bases ATGAAGATACAGAAGTCCTTGAAAGACGGTTTCACGCTCGGATGGTGCAGGGCGGCACGGCCGGTTGCCGCTGCCGCGCT GGCCGCGCTGCTCGTCGCCGCGTGCGGAGGCGACGACGGCGGCGGCGGGAGCCCGTCGCTCGCGGCCGCGAACGTCGCGA ACACGAGCACGTCGACGAACGCGACGACGGCCGCCGATGCGACGACCAATGCCGCGCTGCCGCCGGATCAGCCGTATATC GACAACGACGTCTATGGCACCGGGCCGAACGATTCGGTCAGCGACGCGACGGAGGGCACCGCGGTCGTGCACCGGCAGGT GAAGATCGGCGATCAGATCCTCACCTACACGGCGACGGCCGGCCACCTCGTGACGATCGATCCGATCACGTCGAAGCCGA ACGCGAAGATGTTCTACGTCGCGTACACGCTCGACAATCCGAACCCGGGCAAGCCGCGCCCCGTCACGTTCTTCTACAAC GGCGGCCCGGGCTCGTCGTCGGTGTACCTGCTGCTGGGCTCGTTCGGGCCGAAGCGCCTGCAGTCGTCGTTCCCGAACTT CACGCCGCCCGCGCCGTACCGGCTGCGCGACAACCCCGAGAGCCTGCTCGACCGCTCCGATCTCGTGTTCATCAATCCGG TCGGCACCGGCTACTCGGCCGCGATCGCGCCGGCGAAGAACAAGGATTTCTGGGGCGTCGACCAGGACGCGCACTCGATC GACCGCTTCATCCAGCGCTACCTGACGAAGTACGCGCGCTGGAACTCGCCGAAGTTCCTGTTCGGCGAATCGTACGGCAC GGCGCGCAGCGCGGTGACCGCGTGGGTGCTGCATGAGGACGGCATCGAGCTGAACGGGATCACGCTGCAGTCGTCGATTC TCGACTATGCGAACGCGGTGAGCGCGATCGGCATCTTCCCGACGCTCGCGGCCGATGCGTTCTACTGGAACAAGACGACC ATCAGCCCGAAACCGGCCGATCTGGATGCGTACATGGCGCAGGCGCGCAGCTATGCGGACAACGTGCTCGCGCCGCTCGC GCAGGCACCGAATCCGCAGGACGGCGGCTTCGTCAACGTGCGGCTGAACCTGAACGTCGCGACCGCGCAGCAGATGGGCG CGTACATCGGCACCGATCCGATCTCGCTGGTCCAGACGTTCGGCAATCCGGCCGCGCTCGGCAACGTGCCGTCGTCCAAC GACAACCCGCCGTACACGTTCTTCCTGACGCTCGTGCCGGGCATCCAGATCGGCCAGTACGACGGACGCGCGAACTACAC GGGCAAGGGCATCGCGCCGTACATCCTGCCGAACTCGGGCAGCAACGATCCGTCGATCAGCAACGTCGGCGGCGCGTACA CGGTGCTGTGGAACGACTACATCAACAACGACCTGAAGTATGTGTCGACGTCGTCGTTCGTCGATCTGAACGACCAGGTG TTCAACAACTGGGACTTCAGCCACACGGACCCGACGGGCGCGAACCGCGGCGGCGGCAACACGCTGTACACGGCGGGCGA TCTCGCCGCGACGATGAGCCTGAACCCGGACCTGAAGGTGCTGTCGGCGAACGGCTATTTCGACGCGGTGACGCCGTTCC ACCAGACCGAGCTCACGCTCGCGCAGATGCCGCTCGATCCGTCGCTGAAGTCGGCGAACCTGACGATGAAATACTATCCG TCGGGCCACATGATCTATCTGAACGATCACTCGCGGATCGCGATGAAGGCGGATCTGGCGACGTTCTACGACGGCATCCT CGCGGACCGCACGGCGATGCGGCGCGTGCTGCTGCGCCAGCAGAAGGCGCTGCAGTTGAAGCAGCAGAAGCAACAGCAAG GGCAGTGA
Upstream 100 bases:
>100_bases GGAGTGCGCGTCGCATAACGGTCGCGTTCCCGGCGAAGCGCGCCGATGAAATCATCCGTTTCAATCGGCGGAATTTATCG TTCTATTCGAGAGGGCAATA
Downstream 100 bases:
>100_bases TGCGAGGCTAGCCGTTCCGGCCGCGTCTGCCGGGGCCGGCCGCCGCCGAGCGGCGGCGGATGGCGGGCGGTGCGGTGTGC TTGAACGGCGGCTTCGCGGC
Product: serine-type carboxypeptidase family protein
Products: NA
Alternate protein names: Serine Carboxypeptidase Family Protein; Carboxypeptidase-Related Protein; Serine Carboxypeptidase; Carboxypeptidase C; Serine-Type Carboxypeptidase Family Protein; S10 Family Peptidase; Carboxypeptidase; S10 Family Carboxypeptidase; Acetoin Dehydrogenase E1 Component Beta-Subunit; Carboxypeptidase-Like Protein; Serine Carboxypeptidase Superfamily; Peptidase S
Number of amino acids: Translated: 615; Mature: 615
Protein sequence:
>615_residues MKIQKSLKDGFTLGWCRAARPVAAAALAALLVAACGGDDGGGGSPSLAAANVANTSTSTNATTAADATTNAALPPDQPYI DNDVYGTGPNDSVSDATEGTAVVHRQVKIGDQILTYTATAGHLVTIDPITSKPNAKMFYVAYTLDNPNPGKPRPVTFFYN GGPGSSSVYLLLGSFGPKRLQSSFPNFTPPAPYRLRDNPESLLDRSDLVFINPVGTGYSAAIAPAKNKDFWGVDQDAHSI DRFIQRYLTKYARWNSPKFLFGESYGTARSAVTAWVLHEDGIELNGITLQSSILDYANAVSAIGIFPTLAADAFYWNKTT ISPKPADLDAYMAQARSYADNVLAPLAQAPNPQDGGFVNVRLNLNVATAQQMGAYIGTDPISLVQTFGNPAALGNVPSSN DNPPYTFFLTLVPGIQIGQYDGRANYTGKGIAPYILPNSGSNDPSISNVGGAYTVLWNDYINNDLKYVSTSSFVDLNDQV FNNWDFSHTDPTGANRGGGNTLYTAGDLAATMSLNPDLKVLSANGYFDAVTPFHQTELTLAQMPLDPSLKSANLTMKYYP SGHMIYLNDHSRIAMKADLATFYDGILADRTAMRRVLLRQQKALQLKQQKQQQGQ
Sequences:
>Translated_615_residues MKIQKSLKDGFTLGWCRAARPVAAAALAALLVAACGGDDGGGGSPSLAAANVANTSTSTNATTAADATTNAALPPDQPYI DNDVYGTGPNDSVSDATEGTAVVHRQVKIGDQILTYTATAGHLVTIDPITSKPNAKMFYVAYTLDNPNPGKPRPVTFFYN GGPGSSSVYLLLGSFGPKRLQSSFPNFTPPAPYRLRDNPESLLDRSDLVFINPVGTGYSAAIAPAKNKDFWGVDQDAHSI DRFIQRYLTKYARWNSPKFLFGESYGTARSAVTAWVLHEDGIELNGITLQSSILDYANAVSAIGIFPTLAADAFYWNKTT ISPKPADLDAYMAQARSYADNVLAPLAQAPNPQDGGFVNVRLNLNVATAQQMGAYIGTDPISLVQTFGNPAALGNVPSSN DNPPYTFFLTLVPGIQIGQYDGRANYTGKGIAPYILPNSGSNDPSISNVGGAYTVLWNDYINNDLKYVSTSSFVDLNDQV FNNWDFSHTDPTGANRGGGNTLYTAGDLAATMSLNPDLKVLSANGYFDAVTPFHQTELTLAQMPLDPSLKSANLTMKYYP SGHMIYLNDHSRIAMKADLATFYDGILADRTAMRRVLLRQQKALQLKQQKQQQGQ >Mature_615_residues MKIQKSLKDGFTLGWCRAARPVAAAALAALLVAACGGDDGGGGSPSLAAANVANTSTSTNATTAADATTNAALPPDQPYI DNDVYGTGPNDSVSDATEGTAVVHRQVKIGDQILTYTATAGHLVTIDPITSKPNAKMFYVAYTLDNPNPGKPRPVTFFYN GGPGSSSVYLLLGSFGPKRLQSSFPNFTPPAPYRLRDNPESLLDRSDLVFINPVGTGYSAAIAPAKNKDFWGVDQDAHSI DRFIQRYLTKYARWNSPKFLFGESYGTARSAVTAWVLHEDGIELNGITLQSSILDYANAVSAIGIFPTLAADAFYWNKTT ISPKPADLDAYMAQARSYADNVLAPLAQAPNPQDGGFVNVRLNLNVATAQQMGAYIGTDPISLVQTFGNPAALGNVPSSN DNPPYTFFLTLVPGIQIGQYDGRANYTGKGIAPYILPNSGSNDPSISNVGGAYTVLWNDYINNDLKYVSTSSFVDLNDQV FNNWDFSHTDPTGANRGGGNTLYTAGDLAATMSLNPDLKVLSANGYFDAVTPFHQTELTLAQMPLDPSLKSANLTMKYYP SGHMIYLNDHSRIAMKADLATFYDGILADRTAMRRVLLRQQKALQLKQQKQQQGQ
Specific function: Unknown
COG id: COG2939
COG function: function code E; Carboxypeptidase C (cathepsin A)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66017; Mature: 66017
Theoretical pI: Translated: 6.11; Mature: 6.11
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00588 FLAGELLA_BB_ROD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIQKSLKDGFTLGWCRAARPVAAAALAALLVAACGGDDGGGGSPSLAAANVANTSTSTN CCCHHHHHCCCEEEEHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCC ATTAADATTNAALPPDQPYIDNDVYGTGPNDSVSDATEGTAVVHRQVKIGDQILTYTATA CEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEECC GHLVTIDPITSKPNAKMFYVAYTLDNPNPGKPRPVTFFYNGGPGSSSVYLLLGSFGPKRL CEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEECCCCCCCEEEEEEECCCHHHH QSSFPNFTPPAPYRLRDNPESLLDRSDLVFINPVGTGYSAAIAPAKNKDFWGVDQDAHSI HHCCCCCCCCCCCEECCCHHHHHCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCHHHHH DRFIQRYLTKYARWNSPKFLFGESYGTARSAVTAWVLHEDGIELNGITLQSSILDYANAV HHHHHHHHHHHHCCCCCCEEEECCCCCHHHHEEEEEEECCCCEEEEEEEHHHHHHHHHHH SAIGIFPTLAADAFYWNKTTISPKPADLDAYMAQARSYADNVLAPLAQAPNPQDGGFVNV HHHHHHHHHHHCEEEECCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE RLNLNVATAQQMGAYIGTDPISLVQTFGNPAALGNVPSSNDNPPYTFFLTLVPGIQIGQY EEEEEEEEHHHCCCCCCCCHHHHHHHCCCCCEECCCCCCCCCCCEEEEEEECCCEEEECC DGRANYTGKGIAPYILPNSGSNDPSISNVGGAYTVLWNDYINNDLKYVSTSSFVDLNDQV CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEHHHCCCCEEEECCCEEECCHHH FNNWDFSHTDPTGANRGGGNTLYTAGDLAATMSLNPDLKVLSANGYFDAVTPFHQTELTL HCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEE AQMPLDPSLKSANLTMKYYPSGHMIYLNDHSRIAMKADLATFYDGILADRTAMRRVLLRQ EECCCCCCCCCCCEEEEEECCCCEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH QKALQLKQQKQQQGQ HHHHHHHHHHHHCCC >Mature Secondary Structure MKIQKSLKDGFTLGWCRAARPVAAAALAALLVAACGGDDGGGGSPSLAAANVANTSTSTN CCCHHHHHCCCEEEEHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCC ATTAADATTNAALPPDQPYIDNDVYGTGPNDSVSDATEGTAVVHRQVKIGDQILTYTATA CEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEECC GHLVTIDPITSKPNAKMFYVAYTLDNPNPGKPRPVTFFYNGGPGSSSVYLLLGSFGPKRL CEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEECCCCCCCEEEEEEECCCHHHH QSSFPNFTPPAPYRLRDNPESLLDRSDLVFINPVGTGYSAAIAPAKNKDFWGVDQDAHSI HHCCCCCCCCCCCEECCCHHHHHCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCHHHHH DRFIQRYLTKYARWNSPKFLFGESYGTARSAVTAWVLHEDGIELNGITLQSSILDYANAV HHHHHHHHHHHHCCCCCCEEEECCCCCHHHHEEEEEEECCCCEEEEEEEHHHHHHHHHHH SAIGIFPTLAADAFYWNKTTISPKPADLDAYMAQARSYADNVLAPLAQAPNPQDGGFVNV HHHHHHHHHHHCEEEECCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE RLNLNVATAQQMGAYIGTDPISLVQTFGNPAALGNVPSSNDNPPYTFFLTLVPGIQIGQY EEEEEEEEHHHCCCCCCCCHHHHHHHCCCCCEECCCCCCCCCCCEEEEEEECCCEEEECC DGRANYTGKGIAPYILPNSGSNDPSISNVGGAYTVLWNDYINNDLKYVSTSSFVDLNDQV CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEEHHHCCCCEEEECCCEEECCHHH FNNWDFSHTDPTGANRGGGNTLYTAGDLAATMSLNPDLKVLSANGYFDAVTPFHQTELTL HCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEE AQMPLDPSLKSANLTMKYYPSGHMIYLNDHSRIAMKADLATFYDGILADRTAMRRVLLRQ EECCCCCCCCCCCEEEEEECCCCEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH QKALQLKQQKQQQGQ HHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA