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The map label for this gene is ytfH [H]

Identifier: 237813538

GI number: 237813538

Start: 3197278

End: 3197724

Strand: Reverse

Name: ytfH [H]

Synonym: GBP346_A3314

Alternate gene names: 237813538

Gene position: 3197724-3197278 (Counterclockwise)

Preceding gene: 237813547

Following gene: 237813537

Centisome position: 78.02

GC content: 65.1

Gene sequence:

>447_bases
ATGACGACGATGCGAAAGAACGCACCCGAGGGTGAGCAGATTACCGACAGGAAACCTTCATTGCTCGATGCGCCGCGCAA
GGGCAACGTGTACGCGTCGGAATGCCCGACGCGGCTCGTGCTCGACCGCATCGCGGACAAATGGACTGTCCTGATTCTCG
CGCTGCTGTCGCACGAGCCGCTGCGCTTCAACACGCTGCTGCGGCATATCGAGGGCCTGTCGCAGAAGGTGCTGTCGCAA
ACGCTCAAGCGGCTCGAGCGCGACGGGCTCGTCGCGCGCACCGTCTATGCGACGGTGCCGGTATCCGTCGAATATGCGTT
GACGCCGCTCGGCCACACGCTCGCGCACTCGATCACGCCGATCATCGTGTGGTCGGAGACGCACATCGACGCCGTGCTCG
ATGCGCGCACGGCCTATGACGCTCGGCAGGCGGGTGCGGGCGCCTGA

Upstream 100 bases:

>100_bases
CGGCGGGCGCCGATCGGCGCCGCGGCGCGGAAACGGACCGTCGTGCAAACGGTGCTAGTATCTACGCCACAGGTAGTTAC
CGGAAGAAACTATAGACGGG

Downstream 100 bases:

>100_bases
GTGATCGCACGCGCGCGGCGCGTCAGCGATCGGCATTGAGAAAAAAAGCGAGAAGAATAAATGCCGCGGCAATATGATTT
TTATTCTCGCCGGACGTTTT

Product: transcriptional regulator, PadR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 147

Protein sequence:

>148_residues
MTTMRKNAPEGEQITDRKPSLLDAPRKGNVYASECPTRLVLDRIADKWTVLILALLSHEPLRFNTLLRHIEGLSQKVLSQ
TLKRLERDGLVARTVYATVPVSVEYALTPLGHTLAHSITPIIVWSETHIDAVLDARTAYDARQAGAGA

Sequences:

>Translated_148_residues
MTTMRKNAPEGEQITDRKPSLLDAPRKGNVYASECPTRLVLDRIADKWTVLILALLSHEPLRFNTLLRHIEGLSQKVLSQ
TLKRLERDGLVARTVYATVPVSVEYALTPLGHTLAHSITPIIVWSETHIDAVLDARTAYDARQAGAGA
>Mature_147_residues
TTMRKNAPEGEQITDRKPSLLDAPRKGNVYASECPTRLVLDRIADKWTVLILALLSHEPLRFNTLLRHIEGLSQKVLSQT
LKRLERDGLVARTVYATVPVSVEYALTPLGHTLAHSITPIIVWSETHIDAVLDARTAYDARQAGAGA

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=117, Percent_Identity=41.025641025641, Blast_Score=99, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 16378; Mature: 16247

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTMRKNAPEGEQITDRKPSLLDAPRKGNVYASECPTRLVLDRIADKWTVLILALLSHEP
CCCCCCCCCCCCCCCCCCCCHHCCCCCCCEEHHHCCHHHHHHHHHHHHHHHHHHHHCCCC
LRFNTLLRHIEGLSQKVLSQTLKRLERDGLVARTVYATVPVSVEYALTPLGHTLAHSITP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEECHHHHHHHHCCCE
IIVWSETHIDAVLDARTAYDARQAGAGA
EEEECCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TTMRKNAPEGEQITDRKPSLLDAPRKGNVYASECPTRLVLDRIADKWTVLILALLSHEP
CCCCCCCCCCCCCCCCCCCHHCCCCCCCEEHHHCCHHHHHHHHHHHHHHHHHHHHCCCC
LRFNTLLRHIEGLSQKVLSQTLKRLERDGLVARTVYATVPVSVEYALTPLGHTLAHSITP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEEECHHHHHHHHCCCE
IIVWSETHIDAVLDARTAYDARQAGAGA
EEEECCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]