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The map label for this gene is yqgF [C]

Identifier: 237813515

GI number: 237813515

Start: 3178871

End: 3179311

Strand: Reverse

Name: yqgF [C]

Synonym: GBP346_A3291

Alternate gene names: 237813515

Gene position: 3179311-3178871 (Counterclockwise)

Preceding gene: 237813516

Following gene: 237813514

Centisome position: 77.57

GC content: 66.44

Gene sequence:

>441_bases
ATGAGCGCGGCGCTTTCGCGCGACGCAACGCTCCTCGCGTTCGATTACGGCGAAAAACGCATCGGCGTGGCGGTCGGCAA
TCTGCTGACGCGCACGGCCCGTGCGCTCGTCATCGTTCGCAATCTGAACCGCGAGCATCGCTTCAAGGCGGTCGGCGCGT
TGATCGCCGAATGGAAGCCTGACGCGCTCGTCGTCGGCCTGCCGCTGCATCCGGACGGCGCGCCGCACGAGATGACGCAG
CGGGCGATGCGCTTCGGCAATCAGCTGAACGGCCGCTTCAACCTGCCGGTGAGCTGGGTCGACGAACGCTATTCGTCGGT
CGAGGCGCGCGCGGGCCTGCGCGCGCGCGGCGACGCGGCGGATCGCATCGATGCGGAAGCCGCCCGCGTCATCCTTCAAC
AATACCTCGACGGACTGCCCGATCATCATGAGTTCAATTGA

Upstream 100 bases:

>100_bases
CGCGGATCGTGTTCGATACGCCCGCCGAGGAGCGCTTCGAGGCTGCGCTCGGCCTGCTCGGCGTGAGCTCGTCGATGCTT
TCCGGCGAGGCAGGGCACGC

Downstream 100 bases:

>100_bases
CGCCGAGGCGCTTTACCGCGTCCTGCTTGACCAGATTCGCGCGGCCTATGGCGACGCCGCGTTCGCGCAAGCCGGCGGCC
CCGTGCTCGCGGGCATCCAC

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MSAALSRDATLLAFDYGEKRIGVAVGNLLTRTARALVIVRNLNREHRFKAVGALIAEWKPDALVVGLPLHPDGAPHEMTQ
RAMRFGNQLNGRFNLPVSWVDERYSSVEARAGLRARGDAADRIDAEAARVILQQYLDGLPDHHEFN

Sequences:

>Translated_146_residues
MSAALSRDATLLAFDYGEKRIGVAVGNLLTRTARALVIVRNLNREHRFKAVGALIAEWKPDALVVGLPLHPDGAPHEMTQ
RAMRFGNQLNGRFNLPVSWVDERYSSVEARAGLRARGDAADRIDAEAARVILQQYLDGLPDHHEFN
>Mature_145_residues
SAALSRDATLLAFDYGEKRIGVAVGNLLTRTARALVIVRNLNREHRFKAVGALIAEWKPDALVVGLPLHPDGAPHEMTQR
AMRFGNQLNGRFNLPVSWVDERYSSVEARAGLRARGDAADRIDAEAARVILQQYLDGLPDHHEFN

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=133, Percent_Identity=42.1052631578947, Blast_Score=109, Evalue=8e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 16197; Mature: 16065

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAALSRDATLLAFDYGEKRIGVAVGNLLTRTARALVIVRNLNREHRFKAVGALIAEWKP
CCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
DALVVGLPLHPDGAPHEMTQRAMRFGNQLNGRFNLPVSWVDERYSSVEARAGLRARGDAA
CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHCCCCCCCCCH
DRIDAEAARVILQQYLDGLPDHHEFN
HHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SAALSRDATLLAFDYGEKRIGVAVGNLLTRTARALVIVRNLNREHRFKAVGALIAEWKP
CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
DALVVGLPLHPDGAPHEMTQRAMRFGNQLNGRFNLPVSWVDERYSSVEARAGLRARGDAA
CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHCCCCCCCCCH
DRIDAEAARVILQQYLDGLPDHHEFN
HHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA