| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237813488
Identifier: 237813488
GI number: 237813488
Start: 3150388
End: 3151722
Strand: Direct
Name: 237813488
Synonym: GBP346_A3264
Alternate gene names: NA
Gene position: 3150388-3151722 (Clockwise)
Preceding gene: 237813483
Following gene: 237813489
Centisome position: 76.87
GC content: 69.59
Gene sequence:
>1335_bases ATGCTTCATCGCAGCAAAACCGCTCCCGCGGTCGGCCGGCCAGGTCATCTCGCGCACGTTGCCGCGCCGCGCGCCATGCT GAAATCCAGGCTTTCGAACCCCGACGTCGCGAAGGCCGTCGCGAATCTCGCGTGGCTCGGGCTCGAGCGGCTCACGCAGA TCGGCGTCGCGATCGTCGTGAGCGGCCTGCTCGCCCGCTACTTCGGCCCCGACACGTTCGGCAAATGGCAATACGCGAAC ACGCTGCTCCTCGTGCTCGCGCCGCTCACATGGGTATGCGGCGCCGAGATTCTCGTGCCGACCATCGTCCAGCGCACGGG CGCGCAACTGGGCGCCGTGCTCGGCAGCGCGTTCGCGCTGCGCTTCACGGTATCGGTCGCGGCGCTCGCGCTCACCTGGG CGGCAATCGCGCTGGGCGCGTTCGATCCGCTCGTCGGCGCGATGCTGGCCGGGCTCGCGGTGACGCTCGCGCTGCGCGAG CCGTTCGTCGGCATCGTCAACGCGTGGCTGCAGAGCATGACGTACAGCAAGCCGCAACTGCTCGCGAGCATCGCGGCCGC GCTCGCGAAGATGGCGCTCGTCTGGCTCCTCGTGCGCGCGGCCGCCGCGCCCGCGCGCTTCGGCTGGCTGTGGGCGCTCG AAGCCGCGGCGATCGCGGCCGCGCTGATCTGGTATTACCGCGCCCGCAACGGCGGCACGCTCGGCTGGCGCGTCGAGCGG CCGCTCGTGCGCGAGTTCGCGACGACGGGCACCGTGTTCTGGCTCGGCCTCGTATGCATGTACCTGTTCCTGAAGCTCGA CCGGCTGATGCTCGAGCGCTACGTGTCGTTCGCCGAGCTCGGCCGCTACGCGGCCGCGCAGCAGTTGAACGAAAACTGGA TCACGCTCGCGCTGATGCTCGCGCAAACGATCGCGCCCGCGTTCGTCTACCGCGTGCAAAACGCGCCGCAACTGCGCCGC AACGTGTGGCGCCTCATCGGCATGACGGCCGCGCTGATGATCGCGGGCGCGCTCGTGCTCGATCTGCTCGCGGGCTTCAT CATCCGCAAGGTGTTCGGGCCCGGCTTCGAGACGTCGGTCGACGTGTTCCGCTGGGCGGTGTGGCTCTCGGTGCCGGCCG GCATCGAGGCGATCGGCAATCTCGTCGTGCTCAAGTATCAGGCGAAGTTCGTGCTGCTCGCGAAGTGGTCGGCGGCGCTC GCGCTCGCCGCGCTCGTCAACCTGATCGCGATTCCCGCGCTCGGCCTCTACGGCGCGCTCGCGGGCCTCGCCGCCGGCTA TCTCGCCGCCGCGGCGGTCAATTTCCACTACATTCGCCTGAAGCTGCGCCCATGA
Upstream 100 bases:
>100_bases AGGGGGGCAACGCAACGCACCGCCGATGCCGGAAGCGAATCCGATCCAACTTATAATCGCTGGTTTCAGCTACGCCGATC GCGCCCATTTTAATGCCTGA
Downstream 100 bases:
>100_bases CGCCCACTTTCGCCCCGCCCGGCGCCGCCCGCGCGCTCGACGACGTCGCCGTGCTGATCCCCGCCTACAACGCGCACGAC GATCTGCTGCGCACGCTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: O-Antigen Export Protein; Oligosaccharide Translocase; Lipopolysaccharide Biosynthesis Protein; PST Family Polysaccharide Export Protein
Number of amino acids: Translated: 444; Mature: 444
Protein sequence:
>444_residues MLHRSKTAPAVGRPGHLAHVAAPRAMLKSRLSNPDVAKAVANLAWLGLERLTQIGVAIVVSGLLARYFGPDTFGKWQYAN TLLLVLAPLTWVCGAEILVPTIVQRTGAQLGAVLGSAFALRFTVSVAALALTWAAIALGAFDPLVGAMLAGLAVTLALRE PFVGIVNAWLQSMTYSKPQLLASIAAALAKMALVWLLVRAAAAPARFGWLWALEAAAIAAALIWYYRARNGGTLGWRVER PLVREFATTGTVFWLGLVCMYLFLKLDRLMLERYVSFAELGRYAAAQQLNENWITLALMLAQTIAPAFVYRVQNAPQLRR NVWRLIGMTAALMIAGALVLDLLAGFIIRKVFGPGFETSVDVFRWAVWLSVPAGIEAIGNLVVLKYQAKFVLLAKWSAAL ALAALVNLIAIPALGLYGALAGLAAGYLAAAAVNFHYIRLKLRP
Sequences:
>Translated_444_residues MLHRSKTAPAVGRPGHLAHVAAPRAMLKSRLSNPDVAKAVANLAWLGLERLTQIGVAIVVSGLLARYFGPDTFGKWQYAN TLLLVLAPLTWVCGAEILVPTIVQRTGAQLGAVLGSAFALRFTVSVAALALTWAAIALGAFDPLVGAMLAGLAVTLALRE PFVGIVNAWLQSMTYSKPQLLASIAAALAKMALVWLLVRAAAAPARFGWLWALEAAAIAAALIWYYRARNGGTLGWRVER PLVREFATTGTVFWLGLVCMYLFLKLDRLMLERYVSFAELGRYAAAQQLNENWITLALMLAQTIAPAFVYRVQNAPQLRR NVWRLIGMTAALMIAGALVLDLLAGFIIRKVFGPGFETSVDVFRWAVWLSVPAGIEAIGNLVVLKYQAKFVLLAKWSAAL ALAALVNLIAIPALGLYGALAGLAAGYLAAAAVNFHYIRLKLRP >Mature_444_residues MLHRSKTAPAVGRPGHLAHVAAPRAMLKSRLSNPDVAKAVANLAWLGLERLTQIGVAIVVSGLLARYFGPDTFGKWQYAN TLLLVLAPLTWVCGAEILVPTIVQRTGAQLGAVLGSAFALRFTVSVAALALTWAAIALGAFDPLVGAMLAGLAVTLALRE PFVGIVNAWLQSMTYSKPQLLASIAAALAKMALVWLLVRAAAAPARFGWLWALEAAAIAAALIWYYRARNGGTLGWRVER PLVREFATTGTVFWLGLVCMYLFLKLDRLMLERYVSFAELGRYAAAQQLNENWITLALMLAQTIAPAFVYRVQNAPQLRR NVWRLIGMTAALMIAGALVLDLLAGFIIRKVFGPGFETSVDVFRWAVWLSVPAGIEAIGNLVVLKYQAKFVLLAKWSAAL ALAALVNLIAIPALGLYGALAGLAAGYLAAAAVNFHYIRLKLRP
Specific function: Unknown
COG id: COG2244
COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47837; Mature: 47837
Theoretical pI: Translated: 10.94; Mature: 10.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLHRSKTAPAVGRPGHLAHVAAPRAMLKSRLSNPDVAKAVANLAWLGLERLTQIGVAIVV CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH SGLLARYFGPDTFGKWQYANTLLLVLAPLTWVCGAEILVPTIVQRTGAQLGAVLGSAFAL HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH RFTVSVAALALTWAAIALGAFDPLVGAMLAGLAVTLALREPFVGIVNAWLQSMTYSKPQL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH LASIAAALAKMALVWLLVRAAAAPARFGWLWALEAAAIAAALIWYYRARNGGTLGWRVER HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECH PLVREFATTGTVFWLGLVCMYLFLKLDRLMLERYVSFAELGRYAAAQQLNENWITLALML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH AQTIAPAFVYRVQNAPQLRRNVWRLIGMTAALMIAGALVLDLLAGFIIRKVFGPGFETSV HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH DVFRWAVWLSVPAGIEAIGNLVVLKYQAKFVLLAKWSAALALAALVNLIAIPALGLYGAL HHHHHHHHHHCCCCHHHHCCEEEEEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH AGLAAGYLAAAAVNFHYIRLKLRP HHHHHHHHHHHHHEEEEEEEEECC >Mature Secondary Structure MLHRSKTAPAVGRPGHLAHVAAPRAMLKSRLSNPDVAKAVANLAWLGLERLTQIGVAIVV CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH SGLLARYFGPDTFGKWQYANTLLLVLAPLTWVCGAEILVPTIVQRTGAQLGAVLGSAFAL HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH RFTVSVAALALTWAAIALGAFDPLVGAMLAGLAVTLALREPFVGIVNAWLQSMTYSKPQL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH LASIAAALAKMALVWLLVRAAAAPARFGWLWALEAAAIAAALIWYYRARNGGTLGWRVER HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECH PLVREFATTGTVFWLGLVCMYLFLKLDRLMLERYVSFAELGRYAAAQQLNENWITLALML HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH AQTIAPAFVYRVQNAPQLRRNVWRLIGMTAALMIAGALVLDLLAGFIIRKVFGPGFETSV HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH DVFRWAVWLSVPAGIEAIGNLVVLKYQAKFVLLAKWSAALALAALVNLIAIPALGLYGAL HHHHHHHHHHCCCCHHHHCCEEEEEEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH AGLAAGYLAAAAVNFHYIRLKLRP HHHHHHHHHHHHHEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA