| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237813351
Identifier: 237813351
GI number: 237813351
Start: 3029088
End: 3029801
Strand: Reverse
Name: 237813351
Synonym: GBP346_A3121
Alternate gene names: NA
Gene position: 3029801-3029088 (Counterclockwise)
Preceding gene: 237813352
Following gene: 237813344
Centisome position: 73.92
GC content: 67.51
Gene sequence:
>714_bases ATGAAACGCATTCCCTTCATTCGCGGCGCGGCGCTCGTCGCGGGTGCCCTGATCGTGCTGCTGTCCGGCTGCACGTCCTA CGTCACGACGCAGGTCACGGCGTTTTCGAACTGGAGCGGCAACGACGCGACGCGCACGTACGCATTCGCGCGAACCGCCG AGCAACAGAACAGTCTCGAGCAGTCGACCTACGAGCAAATCGTCGGCAACGAGTTGTCGACCTATTCGTTCAGGCGCGTG CCGACGAAGGACGCGCGCTACCTCGTCAGGCTCGCGTACGGCATCAAGAGCGATTGGGTGTCGGTGCCGCAGCCCGTCTA CTACGATCCGTGGTTCGGCCCCGGCCCGTACTGGCGCGGCGGCCCGTGGGGACCGTTCGGTCCGTGGGGCCCGTTTCCGG CGGGCTACGTGAATCAGAGCTATCAGATCTTTCAGCGCTCGCTCGAAATCCGGATCGCCGAGCGCGCGACGGGCACAGAG GTCTATAACGTCGCCGCGCGCAACGCGGGTGAAGGCTCGTCGCTGCTGCAGGCGATGCCGTATCTCGCTCGCTCGGCGCT CGCCGATTTTCCGCTCGGCAACGGCACCGTACGCACGGTGCGGCTGCCTGTCGACAAGAACGGCGCGCCCGCGCCGATGC CGGCGAACGAACGTGCGGTGCCCGAGGTGCCGGCCATGCCCGCATCCGGCGCAGCCGCGGCGCCGGCGCGTTGA
Upstream 100 bases:
>100_bases GTCTTCTCCATATCGGCGCGGCGTTTGCGCGACGGCGTATGATCCGGTCATCGCGACGCCCCGGCCAGCCCGCGCGACGC CATCGACCCAGAGGACGAAC
Downstream 100 bases:
>100_bases CAGGCGGCGCGTCGACGAACCGGCGCGCCTGCAACGGGCACGCCGGAAAACGGAGAACGGAGGCGGCGGCGCAGCGGGAG GGCTGGGGCGGCTCGCCCGT
Product: putative lipoprotein
Products: NA
Alternate protein names: Lipoprotein Transmembrane; Lipoprotein
Number of amino acids: Translated: 237; Mature: 237
Protein sequence:
>237_residues MKRIPFIRGAALVAGALIVLLSGCTSYVTTQVTAFSNWSGNDATRTYAFARTAEQQNSLEQSTYEQIVGNELSTYSFRRV PTKDARYLVRLAYGIKSDWVSVPQPVYYDPWFGPGPYWRGGPWGPFGPWGPFPAGYVNQSYQIFQRSLEIRIAERATGTE VYNVAARNAGEGSSLLQAMPYLARSALADFPLGNGTVRTVRLPVDKNGAPAPMPANERAVPEVPAMPASGAAAAPAR
Sequences:
>Translated_237_residues MKRIPFIRGAALVAGALIVLLSGCTSYVTTQVTAFSNWSGNDATRTYAFARTAEQQNSLEQSTYEQIVGNELSTYSFRRV PTKDARYLVRLAYGIKSDWVSVPQPVYYDPWFGPGPYWRGGPWGPFGPWGPFPAGYVNQSYQIFQRSLEIRIAERATGTE VYNVAARNAGEGSSLLQAMPYLARSALADFPLGNGTVRTVRLPVDKNGAPAPMPANERAVPEVPAMPASGAAAAPAR >Mature_237_residues MKRIPFIRGAALVAGALIVLLSGCTSYVTTQVTAFSNWSGNDATRTYAFARTAEQQNSLEQSTYEQIVGNELSTYSFRRV PTKDARYLVRLAYGIKSDWVSVPQPVYYDPWFGPGPYWRGGPWGPFGPWGPFPAGYVNQSYQIFQRSLEIRIAERATGTE VYNVAARNAGEGSSLLQAMPYLARSALADFPLGNGTVRTVRLPVDKNGAPAPMPANERAVPEVPAMPASGAAAAPAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25742; Mature: 25742
Theoretical pI: Translated: 9.71; Mature: 9.71
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRIPFIRGAALVAGALIVLLSGCTSYVTTQVTAFSNWSGNDATRTYAFARTAEQQNSLE CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHH QSTYEQIVGNELSTYSFRRVPTKDARYLVRLAYGIKSDWVSVPQPVYYDPWFGPGPYWRG HHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCC GPWGPFGPWGPFPAGYVNQSYQIFQRSLEIRIAERATGTEVYNVAARNAGEGSSLLQAMP CCCCCCCCCCCCCCHHHCHHHHHHHHHHHEEEECCCCCCHHHHHHHCCCCCHHHHHHHHH YLARSALADFPLGNGTVRTVRLPVDKNGAPAPMPANERAVPEVPAMPASGAAAAPAR HHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKRIPFIRGAALVAGALIVLLSGCTSYVTTQVTAFSNWSGNDATRTYAFARTAEQQNSLE CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHH QSTYEQIVGNELSTYSFRRVPTKDARYLVRLAYGIKSDWVSVPQPVYYDPWFGPGPYWRG HHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCC GPWGPFGPWGPFPAGYVNQSYQIFQRSLEIRIAERATGTEVYNVAARNAGEGSSLLQAMP CCCCCCCCCCCCCCHHHCHHHHHHHHHHHEEEECCCCCCHHHHHHHCCCCCHHHHHHHHH YLARSALADFPLGNGTVRTVRLPVDKNGAPAPMPANERAVPEVPAMPASGAAAAPAR HHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA