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The map label for this gene is 237813176

Identifier: 237813176

GI number: 237813176

Start: 2864876

End: 2865535

Strand: Direct

Name: 237813176

Synonym: GBP346_A2938

Alternate gene names: NA

Gene position: 2864876-2865535 (Clockwise)

Preceding gene: 237813174

Following gene: 237813177

Centisome position: 69.9

GC content: 71.52

Gene sequence:

>660_bases
ATGCCGTTTCCTTTTTTCACGGCGCGCGCGCAAGCCGCCTCGTCGCCCGCTTCCGCCCGCCGCACGCGCTTTCTCCGCTT
CGCCGCCGCCTGCGCGGCGGCGGCCGCGCTCGCCGGCTGCACGCCGCGCGGCGAGCCGTGGCGCCTCGCGAACGTGACGG
GCCACCTGCCGGATCTGACGTTCTCGCTCACGGGCGAGGACGGCAGGCCGATCGACGCGTCCGCTTTCCGCGGCCGCGCC
GCGCTCGTCTATTTCGGCTACACGCACTGCCCGGACGTGTGCCCCGAAACGATGGCGCGGCTGATGCGGGTGCTCGCCCT
GCTGAGCCCGCAGGCGCGCAGCGAAGTGCGCATTCTGTTCGTGTCGGTCGACCCGGCGCGCGACACGCCGGCCGCGATGC
GCGACTATGTCGGCGCATTCGACGCCGAGCACGCGTACGGGCTCACGGGCAGCGAGCGGCAGATCGAATCGCTCGCGAAG
CGCTACCGCGTCGCGTACCAGATGGAAAAGCGCGACCCGAACGGCAGCTACGAGGTCACGCACAGCTCGGCCGTCTACGT
GTTCGACGCGCAAGGCCGCGCGCGGCTGCTCGCGACCGACCAGGATTCCCCCGACGCGATCGCCGCCGATCTGCGCCGGA
TCATCGTCAACCGTTCCTGA

Upstream 100 bases:

>100_bases
CGATGCGTCCTGGATCGATGCGGGCCCCGCGCCTGGCGATCGCAGCCCCGCGACACCGCGCATGGCCGTCGCGCACGATT
GCTTCGAACCGAATTCGCCG

Downstream 100 bases:

>100_bases
ACCGGAACCCATTTACCACTCAGCCGATGACGCTCAAACCAACCCTCCTCGCCGCGCTCGCCGCCCTCTCGCTCAGCCTG
AACGCCCATGCGGCCGGCGC

Product: SCO1/SenC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MPFPFFTARAQAASSPASARRTRFLRFAAACAAAAALAGCTPRGEPWRLANVTGHLPDLTFSLTGEDGRPIDASAFRGRA
ALVYFGYTHCPDVCPETMARLMRVLALLSPQARSEVRILFVSVDPARDTPAAMRDYVGAFDAEHAYGLTGSERQIESLAK
RYRVAYQMEKRDPNGSYEVTHSSAVYVFDAQGRARLLATDQDSPDAIAADLRRIIVNRS

Sequences:

>Translated_219_residues
MPFPFFTARAQAASSPASARRTRFLRFAAACAAAAALAGCTPRGEPWRLANVTGHLPDLTFSLTGEDGRPIDASAFRGRA
ALVYFGYTHCPDVCPETMARLMRVLALLSPQARSEVRILFVSVDPARDTPAAMRDYVGAFDAEHAYGLTGSERQIESLAK
RYRVAYQMEKRDPNGSYEVTHSSAVYVFDAQGRARLLATDQDSPDAIAADLRRIIVNRS
>Mature_218_residues
PFPFFTARAQAASSPASARRTRFLRFAAACAAAAALAGCTPRGEPWRLANVTGHLPDLTFSLTGEDGRPIDASAFRGRAA
LVYFGYTHCPDVCPETMARLMRVLALLSPQARSEVRILFVSVDPARDTPAAMRDYVGAFDAEHAYGLTGSERQIESLAKR
YRVAYQMEKRDPNGSYEVTHSSAVYVFDAQGRARLLATDQDSPDAIAADLRRIIVNRS

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=133, Percent_Identity=38.3458646616541, Blast_Score=98, Evalue=7e-21,
Organism=Homo sapiens, GI281182722, Length=133, Percent_Identity=38.3458646616541, Blast_Score=98, Evalue=7e-21,
Organism=Homo sapiens, GI281182716, Length=133, Percent_Identity=38.3458646616541, Blast_Score=98, Evalue=7e-21,
Organism=Homo sapiens, GI153791313, Length=133, Percent_Identity=38.3458646616541, Blast_Score=98, Evalue=7e-21,
Organism=Homo sapiens, GI4759068, Length=133, Percent_Identity=36.0902255639098, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17531419, Length=136, Percent_Identity=30.1470588235294, Blast_Score=88, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6319498, Length=134, Percent_Identity=36.5671641791045, Blast_Score=110, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6319511, Length=134, Percent_Identity=32.089552238806, Blast_Score=89, Evalue=4e-19,
Organism=Drosophila melanogaster, GI19920710, Length=158, Percent_Identity=31.0126582278481, Blast_Score=89, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 23947; Mature: 23816

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFPFFTARAQAASSPASARRTRFLRFAAACAAAAALAGCTPRGEPWRLANVTGHLPDLT
CCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEE
FSLTGEDGRPIDASAFRGRAALVYFGYTHCPDVCPETMARLMRVLALLSPQARSEVRILF
EEEECCCCCCCCHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
VSVDPARDTPAAMRDYVGAFDAEHAYGLTGSERQIESLAKRYRVAYQMEKRDPNGSYEVT
EEECCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
HSSAVYVFDAQGRARLLATDQDSPDAIAADLRRIIVNRS
ECCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PFPFFTARAQAASSPASARRTRFLRFAAACAAAAALAGCTPRGEPWRLANVTGHLPDLT
CCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEE
FSLTGEDGRPIDASAFRGRAALVYFGYTHCPDVCPETMARLMRVLALLSPQARSEVRILF
EEEECCCCCCCCHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
VSVDPARDTPAAMRDYVGAFDAEHAYGLTGSERQIESLAKRYRVAYQMEKRDPNGSYEVT
EEECCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
HSSAVYVFDAQGRARLLATDQDSPDAIAADLRRIIVNRS
ECCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA