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The map label for this gene is hpnJ [C]

Identifier: 237813155

GI number: 237813155

Start: 2843551

End: 2844996

Strand: Reverse

Name: hpnJ [C]

Synonym: GBP346_A2917

Alternate gene names: 237813155

Gene position: 2844996-2843551 (Counterclockwise)

Preceding gene: 237813156

Following gene: 237813154

Centisome position: 69.41

GC content: 62.24

Gene sequence:

>1446_bases
ATGCAGCAGGCTACCGGAGCATTCATGAAAACGCTGTTCTTGCAGGCACCGTCGTACGACGGCTTCGACGGCGGCGCGGG
CTCCCGCTACCAGGCGAAACGCGAGATCCGATCCTTCTGGTATCCGACCTGGCTCGCGCAGCCGGCCGCGCTCGTGCCGG
GCAGCCGCGTCGTCGACGCGCCCGCGGACGGCCTGTCGGTCGAGGACACGCTCAAGATCGCGAAGGACTACGATCTCGTG
ATCATCCACACGAGCACGCCGTCGTTCCCGACCGATGCGATGTTCGCGGAAGACCTGAAGAAGATGAAGCCGTCGATGCT
CGTCGGCATGGTCGGCGCGAAGGTCGCGGTCGATCCGCACAACTCGCTCACCGCGACGCAAGCGATCGATTTCGTCTGCC
GCGAGGAATTCGACTACACGTGCAAGGACATCGCCGAGGGCAAGCCGTTCGCCGAGATCCTCGGGATGAGCTACCGCGCG
AAGGACGGCTCGATCGAGCATAACGGCCCGCGTCCGATGATCGAGAACATGGACGAGCTGCCGTTCGTCGCGCCCGTCTA
CAAGCGCGACCTGAAGATCGACAACTACTTCATCGGCTATCTGAACTACCCGTACGTGTCGATCTACACGGGCCGCGGCT
GCCGCTCGAAGTGCACGTTCTGCCTGTGGCCGCAGACGGTCGGCGGCCATCGCTACCGCGTGCGCTCGGTCGAGAGCGTG
CTCGCGGAAGTGAAGTGGATCCGCGACAACATGCCGGAAGTGAAGGAGATCATGTTCGACGACGACACCTTCACCGATTT
CAAGCCGCGCGTCGAGGAAATCGCGCGCGGGCTCGGCAAGCTCGGCGTCACGTGGTCGTGCAACGCGAAGGCGAACGTAC
CGTATTCGACGCTGAAGATCATGAAGGAGAACGGCCTGCGGCTGCTGCTCGTCGGCTACGAGTCGGGCGACGACCAGATC
CTGCTGAACATCAAGAAGGGCTTGCGCACGGACATCGCGCGCCGCTTCAACGAGGATTGCAAGAAGCTCGGCATCAAGAT
CCACGGCACCTTCATCCTCGGCCTGCCGGGCGAGACGAAGGAAACGATCAAGAAGACGATCGAGTACGCGAAGGAAATCA
ATCCGCACACGATCCAGGTGTCGCTCGCCGCGCCGTATCCGGGCACGCGCCTGTACAACCAGGCGATCGAGAACGGCTGG
ATGGAAGAGAACAAGACGATCAATCTCGTCAGCAAGGAGGGGGTGCAGCTCGCCGCGATCGGCTATCCGCACCTGCCGAA
GGAAGAGATCTATCATCAGCTCGAGCATTTCTATCGCGAGTTCTATTTCCGCCCGTCGAAGATCTGGGAAATCCTGCGCG
AGATGCTGACGAGCTGGGACATGATGAAGCGCCGCCTGCGCGAGGGCGTCGAGTTCTTCCGCTTCCTGCGCGCGCACGAG
GCGTGA

Upstream 100 bases:

>100_bases
CGACGGACGCTGACGAGCGCGGGGCTCATACACAGGATGCGCGGGCGGCGGCAGGCCGCCCGCGGTTTTCGAAACACTTG
TACTGAACGAATTGATATCT

Downstream 100 bases:

>100_bases
TCGGTGGCGGCTTGTGACGCGGCGCCGCGCGCGCTGATCTTCACGGCGGACGACTTCGGCCTGCATGAGCGGGTCAACGC
GGCCGTCGAGCGTGCGCACC

Product: hopanoid biosynthesis associated radical SAM protein HpnJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 481; Mature: 481

Protein sequence:

>481_residues
MQQATGAFMKTLFLQAPSYDGFDGGAGSRYQAKREIRSFWYPTWLAQPAALVPGSRVVDAPADGLSVEDTLKIAKDYDLV
IIHTSTPSFPTDAMFAEDLKKMKPSMLVGMVGAKVAVDPHNSLTATQAIDFVCREEFDYTCKDIAEGKPFAEILGMSYRA
KDGSIEHNGPRPMIENMDELPFVAPVYKRDLKIDNYFIGYLNYPYVSIYTGRGCRSKCTFCLWPQTVGGHRYRVRSVESV
LAEVKWIRDNMPEVKEIMFDDDTFTDFKPRVEEIARGLGKLGVTWSCNAKANVPYSTLKIMKENGLRLLLVGYESGDDQI
LLNIKKGLRTDIARRFNEDCKKLGIKIHGTFILGLPGETKETIKKTIEYAKEINPHTIQVSLAAPYPGTRLYNQAIENGW
MEENKTINLVSKEGVQLAAIGYPHLPKEEIYHQLEHFYREFYFRPSKIWEILREMLTSWDMMKRRLREGVEFFRFLRAHE
A

Sequences:

>Translated_481_residues
MQQATGAFMKTLFLQAPSYDGFDGGAGSRYQAKREIRSFWYPTWLAQPAALVPGSRVVDAPADGLSVEDTLKIAKDYDLV
IIHTSTPSFPTDAMFAEDLKKMKPSMLVGMVGAKVAVDPHNSLTATQAIDFVCREEFDYTCKDIAEGKPFAEILGMSYRA
KDGSIEHNGPRPMIENMDELPFVAPVYKRDLKIDNYFIGYLNYPYVSIYTGRGCRSKCTFCLWPQTVGGHRYRVRSVESV
LAEVKWIRDNMPEVKEIMFDDDTFTDFKPRVEEIARGLGKLGVTWSCNAKANVPYSTLKIMKENGLRLLLVGYESGDDQI
LLNIKKGLRTDIARRFNEDCKKLGIKIHGTFILGLPGETKETIKKTIEYAKEINPHTIQVSLAAPYPGTRLYNQAIENGW
MEENKTINLVSKEGVQLAAIGYPHLPKEEIYHQLEHFYREFYFRPSKIWEILREMLTSWDMMKRRLREGVEFFRFLRAHE
A
>Mature_481_residues
MQQATGAFMKTLFLQAPSYDGFDGGAGSRYQAKREIRSFWYPTWLAQPAALVPGSRVVDAPADGLSVEDTLKIAKDYDLV
IIHTSTPSFPTDAMFAEDLKKMKPSMLVGMVGAKVAVDPHNSLTATQAIDFVCREEFDYTCKDIAEGKPFAEILGMSYRA
KDGSIEHNGPRPMIENMDELPFVAPVYKRDLKIDNYFIGYLNYPYVSIYTGRGCRSKCTFCLWPQTVGGHRYRVRSVESV
LAEVKWIRDNMPEVKEIMFDDDTFTDFKPRVEEIARGLGKLGVTWSCNAKANVPYSTLKIMKENGLRLLLVGYESGDDQI
LLNIKKGLRTDIARRFNEDCKKLGIKIHGTFILGLPGETKETIKKTIEYAKEINPHTIQVSLAAPYPGTRLYNQAIENGW
MEENKTINLVSKEGVQLAAIGYPHLPKEEIYHQLEHFYREFYFRPSKIWEILREMLTSWDMMKRRLREGVEFFRFLRAHE
A

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 B12-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006158
- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR007197 [H]

Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 54947; Mature: 54947

Theoretical pI: Translated: 7.81; Mature: 7.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQATGAFMKTLFLQAPSYDGFDGGAGSRYQAKREIRSFWYPTWLAQPAALVPGSRVVDA
CCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCEECC
PADGLSVEDTLKIAKDYDLVIIHTSTPSFPTDAMFAEDLKKMKPSMLVGMVGAKVAVDPH
CCCCCCHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHCCEEEECCC
NSLTATQAIDFVCREEFDYTCKDIAEGKPFAEILGMSYRAKDGSIEHNGPRPMIENMDEL
CCCHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHCCCEECCCCCCCCCCCCCHHCCCCCC
PFVAPVYKRDLKIDNYFIGYLNYPYVSIYTGRGCRSKCTFCLWPQTVGGHRYRVRSVESV
CCCCHHHHHCCEECCEEEEEECCCEEEEEECCCCCCCCCEEECCCCCCCCEEHHHHHHHH
LAEVKWIRDNMPEVKEIMFDDDTFTDFKPRVEEIARGLGKLGVTWSCNAKANVPYSTLKI
HHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHH
MKENGLRLLLVGYESGDDQILLNIKKGLRTDIARRFNEDCKKLGIKIHGTFILGLPGETK
HHCCCCEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCHH
ETIKKTIEYAKEINPHTIQVSLAAPYPGTRLYNQAIENGWMEENKTINLVSKEGVQLAAI
HHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEE
GYPHLPKEEIYHQLEHFYREFYFRPSKIWEILREMLTSWDMMKRRLREGVEFFRFLRAHE
CCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
A
C
>Mature Secondary Structure
MQQATGAFMKTLFLQAPSYDGFDGGAGSRYQAKREIRSFWYPTWLAQPAALVPGSRVVDA
CCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCCEECC
PADGLSVEDTLKIAKDYDLVIIHTSTPSFPTDAMFAEDLKKMKPSMLVGMVGAKVAVDPH
CCCCCCHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHCCEEEECCC
NSLTATQAIDFVCREEFDYTCKDIAEGKPFAEILGMSYRAKDGSIEHNGPRPMIENMDEL
CCCHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHCCCEECCCCCCCCCCCCCHHCCCCCC
PFVAPVYKRDLKIDNYFIGYLNYPYVSIYTGRGCRSKCTFCLWPQTVGGHRYRVRSVESV
CCCCHHHHHCCEECCEEEEEECCCEEEEEECCCCCCCCCEEECCCCCCCCEEHHHHHHHH
LAEVKWIRDNMPEVKEIMFDDDTFTDFKPRVEEIARGLGKLGVTWSCNAKANVPYSTLKI
HHHHHHHHCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHH
MKENGLRLLLVGYESGDDQILLNIKKGLRTDIARRFNEDCKKLGIKIHGTFILGLPGETK
HHCCCCEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCHH
ETIKKTIEYAKEINPHTIQVSLAAPYPGTRLYNQAIENGWMEENKTINLVSKEGVQLAAI
HHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEE
GYPHLPKEEIYHQLEHFYREFYFRPSKIWEILREMLTSWDMMKRRLREGVEFFRFLRAHE
CCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]