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The map label for this gene is desA [H]

Identifier: 237813136

GI number: 237813136

Start: 2825628

End: 2826902

Strand: Direct

Name: desA [H]

Synonym: GBP346_A2898

Alternate gene names: 237813136

Gene position: 2825628-2826902 (Clockwise)

Preceding gene: 237813135

Following gene: 237813139

Centisome position: 68.94

GC content: 69.02

Gene sequence:

>1275_bases
GTGCAGTGCGCGCCGCATCGCAAGCGCGATCCGGCGGCCGGCATGCGCGCCGCCGCCCGCGCCCGCCGCCGCATGGCCGC
GGATCGCGGCGCGACGGCGCGCCGCGCATCGCTGTCTCTTTGTGTGACCGACTCCATGAACGACTCCTCCCACCCCATTC
GCGTCGACGAGCCGATGCCGCACCGCAAGGTCATCCGCTCATGGATCACGCCGTTCGGCGAGCGCGTGATCGCGCGCTCG
ATCGTGCTGCTCGCCGTCGATTATCTGCTGCTCTTCGCCGCGTTCGCGGGCGCGCTGCTCGCCGCGTCGGGCATCGTGAA
GATCGTCTGCGGGATGGCGGCCGGCTTCATCACCGGGCGCCTTTTCATCATCGGTCACGACGCGTGCCACCAGAGCCTCA
CGCCGAATCACCGGCTCAACCGCTGGCTCGGCCGCATCGCGTTCCTGCCGTCGCTCACGCCGTACAGCCTGTGGGAAGTC
GGCCACAACGTCGTCCACCACGGCTACACGAACCTGAAGGGCTTCGATTTCGTCTGGGCGCCGCTCACGCCCGGCGAGTA
CGCGGCGCTATCGCCCGCGCGGCGCCTGCTCGATCGCATTTATCGCAGCGGCTGGGCGCCGGGGCTCTACTATCTCGTCG
AGATCTGGTGGCTGCGGATGTACTTTCCGGCGAAGGCCTACCTCGGCGCGTCGCGGCCGATCTTCCGCCGCGACTGTCTG
CTCGTCACGGGCTTCGCCGCGCTGTGGATCGGCGCGGTGGTCTGGATCGCCGCGGCGACCCGGCAATCGATGCCGCTGCT
GCTCGTCACGGGCGTCGCCGTGCCGTTCCTGTTCTGGTGCTCGATGATCGGCTTCGTCGTCTACGTTCACCATACCGATC
CGCGCATCTCGTGGCATGCGAACCGCGCCGAGTGGTCGCGCGCGGCGCCGTTCGTATCGACCACGTTGCACCTGACGTTC
CCGTTCGGCATCGGCGGCCTGCTGCATCACATCATGGAGCACACCGCGCACCACGTCGACATGAGCATCCCGCTGTACGG
GCTGAAGGACGCGCAGGCGAAGCTCGAGGCGATGCTGCCGGGGCGCATCGTCGTGCAGCGCTTCAGTTGGCGCTGGTATT
TCGACACCGCGCGGCGTTGCAAGCTCTACGATACGGACCGCAAGCGCTGGACCGACTATCGCGGCCGCGCGACGAGCGAC
GCGCATCTGCGCGCGGATGCGCCGATGGCCGAGCAGCGGCCGATCGACGCGCCGCATGGGCCGGGCGGCGCGTGA

Upstream 100 bases:

>100_bases
TGTCTATCGCCGATGCCGTCCCGCGCCGGACGGCATTGCCCTTGTCGCGGCCGGATCGCGCGGGCTGTCGACGCCCGCGC
CGCTGCGCCCGCTTGTCCGC

Downstream 100 bases:

>100_bases
CGCGGGCGGCTGCGCGGTTAGCGGTTAGCGGTTAGCGGTTAGCGGTTACGTTAGCCGTTGCGGCTAGCGGCTGCACGGCC
CCGAATGCCGCTCGCGGCAT

Product: fatty acid desaturase family protein

Products: NA

Alternate protein names: Delta(12)-desaturase [H]

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MQCAPHRKRDPAAGMRAAARARRRMAADRGATARRASLSLCVTDSMNDSSHPIRVDEPMPHRKVIRSWITPFGERVIARS
IVLLAVDYLLLFAAFAGALLAASGIVKIVCGMAAGFITGRLFIIGHDACHQSLTPNHRLNRWLGRIAFLPSLTPYSLWEV
GHNVVHHGYTNLKGFDFVWAPLTPGEYAALSPARRLLDRIYRSGWAPGLYYLVEIWWLRMYFPAKAYLGASRPIFRRDCL
LVTGFAALWIGAVVWIAAATRQSMPLLLVTGVAVPFLFWCSMIGFVVYVHHTDPRISWHANRAEWSRAAPFVSTTLHLTF
PFGIGGLLHHIMEHTAHHVDMSIPLYGLKDAQAKLEAMLPGRIVVQRFSWRWYFDTARRCKLYDTDRKRWTDYRGRATSD
AHLRADAPMAEQRPIDAPHGPGGA

Sequences:

>Translated_424_residues
MQCAPHRKRDPAAGMRAAARARRRMAADRGATARRASLSLCVTDSMNDSSHPIRVDEPMPHRKVIRSWITPFGERVIARS
IVLLAVDYLLLFAAFAGALLAASGIVKIVCGMAAGFITGRLFIIGHDACHQSLTPNHRLNRWLGRIAFLPSLTPYSLWEV
GHNVVHHGYTNLKGFDFVWAPLTPGEYAALSPARRLLDRIYRSGWAPGLYYLVEIWWLRMYFPAKAYLGASRPIFRRDCL
LVTGFAALWIGAVVWIAAATRQSMPLLLVTGVAVPFLFWCSMIGFVVYVHHTDPRISWHANRAEWSRAAPFVSTTLHLTF
PFGIGGLLHHIMEHTAHHVDMSIPLYGLKDAQAKLEAMLPGRIVVQRFSWRWYFDTARRCKLYDTDRKRWTDYRGRATSD
AHLRADAPMAEQRPIDAPHGPGGA
>Mature_424_residues
MQCAPHRKRDPAAGMRAAARARRRMAADRGATARRASLSLCVTDSMNDSSHPIRVDEPMPHRKVIRSWITPFGERVIARS
IVLLAVDYLLLFAAFAGALLAASGIVKIVCGMAAGFITGRLFIIGHDACHQSLTPNHRLNRWLGRIAFLPSLTPYSLWEV
GHNVVHHGYTNLKGFDFVWAPLTPGEYAALSPARRLLDRIYRSGWAPGLYYLVEIWWLRMYFPAKAYLGASRPIFRRDCL
LVTGFAALWIGAVVWIAAATRQSMPLLLVTGVAVPFLFWCSMIGFVVYVHHTDPRISWHANRAEWSRAAPFVSTTLHLTF
PFGIGGLLHHIMEHTAHHVDMSIPLYGLKDAQAKLEAMLPGRIVVQRFSWRWYFDTARRCKLYDTDRKRWTDYRGRATSD
AHLRADAPMAEQRPIDAPHGPGGA

Specific function: Can introduce a second cis double bond at the Delta(12) position of fatty acid bound to membranes glycerolipids. This enzyme is involved in chilling tolerance because the phase transition temperature of lipids of cellular membranes depends on the degree o

COG id: COG3239

COG function: function code I; Fatty acid desaturase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fatty acid desaturase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005804 [H]

Pfam domain/function: PF00487 FA_desaturase [H]

EC number: NA

Molecular weight: Translated: 47710; Mature: 47710

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQCAPHRKRDPAAGMRAAARARRRMAADRGATARRASLSLCVTDSMNDSSHPIRVDEPMP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHCEEEEEEECCCCCCCCCEECCCCCC
HRKVIRSWITPFGERVIARSIVLLAVDYLLLFAAFAGALLAASGIVKIVCGMAAGFITGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCE
LFIIGHDACHQSLTPNHRLNRWLGRIAFLPSLTPYSLWEVGHNVVHHGYTNLKGFDFVWA
EEEEECHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEE
PLTPGEYAALSPARRLLDRIYRSGWAPGLYYLVEIWWLRMYFPAKAYLGASRPIFRRDCL
CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHCCCCCCCHHHHHH
LVTGFAALWIGAVVWIAAATRQSMPLLLVTGVAVPFLFWCSMIGFVVYVHHTDPRISWHA
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEECC
NRAEWSRAAPFVSTTLHLTFPFGIGGLLHHIMEHTAHHVDMSIPLYGLKDAQAKLEAMLP
CHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
GRIVVQRFSWRWYFDTARRCKLYDTDRKRWTDYRGRATSDAHLRADAPMAEQRPIDAPHG
CHHHHHHHCCEEEECCCCCCEEEECCHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCC
PGGA
CCCC
>Mature Secondary Structure
MQCAPHRKRDPAAGMRAAARARRRMAADRGATARRASLSLCVTDSMNDSSHPIRVDEPMP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHCEEEEEEECCCCCCCCCEECCCCCC
HRKVIRSWITPFGERVIARSIVLLAVDYLLLFAAFAGALLAASGIVKIVCGMAAGFITGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCE
LFIIGHDACHQSLTPNHRLNRWLGRIAFLPSLTPYSLWEVGHNVVHHGYTNLKGFDFVWA
EEEEECHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEE
PLTPGEYAALSPARRLLDRIYRSGWAPGLYYLVEIWWLRMYFPAKAYLGASRPIFRRDCL
CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHCCCCCCCHHHHHH
LVTGFAALWIGAVVWIAAATRQSMPLLLVTGVAVPFLFWCSMIGFVVYVHHTDPRISWHA
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEECC
NRAEWSRAAPFVSTTLHLTFPFGIGGLLHHIMEHTAHHVDMSIPLYGLKDAQAKLEAMLP
CHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
GRIVVQRFSWRWYFDTARRCKLYDTDRKRWTDYRGRATSDAHLRADAPMAEQRPIDAPHG
CHHHHHHHCCEEEECCCCCCEEEECCHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCC
PGGA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA