| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237812939
Identifier: 237812939
GI number: 237812939
Start: 2633739
End: 2636153
Strand: Reverse
Name: 237812939
Synonym: GBP346_A2699
Alternate gene names: NA
Gene position: 2636153-2633739 (Counterclockwise)
Preceding gene: 237812940
Following gene: 237812938
Centisome position: 64.32
GC content: 67.83
Gene sequence:
>2415_bases ATGGCACGCGAAATCGCGTTGGGGATCGTGATCGGCGGGGCGGTATCCGCGACGTTCGGCAAGGCGATCTCCGACACGCA ATCGAAGATCGTCGGGCTGCGCAAGACGGCCGCTGAAAAAGGCATGTGGCAGCGCCAGATCGGCGAGACGATCAAGTTAC AGGACGAGTTTCGCCGCCTGCATCGCGCGGGCGACAGCGCGGCCGAGACGATCCGGCGCAAGCTGGATTCGAATCTGCGG ACGTTGCGCGACGCCGGCATCGAGGTGGACCGGCTTGATCGCGCGTATGCGCGGCTTGGCCGCACCGCGCGCGGGCTCGA ATTGCGCGCGATGGGGCACGAGCGCCTGAGCGGCGGCCGGGAGGCGATGCGCGGCGCGATCGGCGACTCGATGAAGCTGA CCGCCGCGATCGCGGTGCCGACGATGGTGTCGGCGCAGTATCAGGCGATCATCCGCGACATCGCGATCAAGGCGGGCATC GCGCGCACGGGCGAAGAGCGCGCGATGTCCGACCGGATTCGACGCGATGCATCGGCCAACGGGATGAACCGCAACGAACT GGCCGAGGCGGTGAACCAGATGGTGGCGGCCGGGATGGACGTCGACCGGGCGCTCGGCTTCGCGCCGGCCGTCGCGAAAT TTTCGGTCGGCCAAGGTGCGACGAGTGTCGAGACGGCGAAGATGATTCAGGCGCTGGAGCAAAACGCGGACATCAAGGAT CCGGCCGCGATGCTCAAGGCGCTGGAGGCGATCGCGTATCTCGGCAAGGAAGGCTCGTTCGAGTCGGTCGACATGGCCCG CTGGTTCCCGGTGCTGCTCGCCGAAATGAAGAAGATCGGCATCACGGGGCAGGATTCGGTGACGCAGTTGGGCGCGATGC TTCAGGTGCAGATGAAGACGGCGGGCAACGCCGACGAAGCCGCGAACAACCTGAAAAACTGGTTCTCGAAGATCGGCTCG GGCGAGACGGAACGCAACTACAAGAAAGCCGGCGTCGACTACGAAGCGAAGATGAAGGAGGCGATCGGCAAGGGCTGGTC GACGCTCGAAGCGTCGTTCGTGCTCGCGCGCGCGTACATCGAGCGGGTCGATCCGGCGAAGGCGAAGCAGTTGGCCGAGA CGGCGAAGTCGATCAACGCCGAGCTGGATCCGGCCAAGCGTCAGAAGCAGATCCGCGCGTTCGAAGAGACGATGAAGACG GGCGACCTGTTCAACGACATGCAGGTGAAGGCGGCGCTCACCGCGTACTTGCAGAACGCCGATCTCTACTCGAATCTGAA GCGCAACGCCGCATCGGCGAGCGGCGAGATCGAGAAGGATCTCAAAGACCGCCGCGACGCGTCCAAGCAGATCTGGAAAG AAGTTGCGGATCAGTGGGACGAGGCAATGCGCAGCATCGGCGACGCGCTGCGTCCCGTGACGGATATTGCGGGCGAGCAG GCGAAGAAGGCGGGCGGCAAGGTGCGCGATATCGTCGATGCGTCGCCACGTGCGGCGGCGGCCGTCATCGGCGTCGCGGG CGCGGCGATCGCGTATCGCGGTGCGCGTGCGGCGTGGTCGATTGGTCGCGGCGTGCTCGATGTCGCGCGTGGTGGTTGGT TGGCGCGAGGCGGCGAGCGCAGCGGGAAGGGCGGCAAGGGAGCGAAGCCGGGGCGCGGCGCTCAGGCGCTCGATGCGCTC GGCGCGGCGGCCAGCGGCGTGCAGCGTGTCTTCGTCGTCAACATGCCGGGCGGCGGCATCGGCGGCGGATCGGTCGGCGA TCTGATCGAGGGTGCGGCAGGTGTGGCGAGCGGCAGGGCGGGCAAGGCCGGGCGCTTCGGGCGGCTTGGCCGGGCGCTAG GCGGGATTGTCGGCCGCGTGTTGCCGTATGCCGGCAAGATCGCGCTCGCCGGGACGGTGCTGAAGCTGGGGCTCGCCGCG AAGGACGCATACGCGGTCGCGGCGGGCGACGATCCGCGCGCGCGGAAGGCGGAGAGCTTCGCGGGCATCGGCGGCAGTCT CGCGGGCGGCGTCGTCGGCGCGAAGCTCGGCGCGTCGATCGGCGCGTTCGGTGGGCCGCTTGGCGCTGCGTTCGGCGGCG TCGCGGGCGGGGCGATCGGCACCTTCGCCGGCCAGAAGCTGCTCGGCGCACTCACGCGATGGGCGTTTCAGCAGCGCGGC GACACGCCCGAAGCCGCGCGCGCGGTCGCGAATGCGAAGGCGCTCGTCGAGCCCGGCGTCGCCGAGCGGCGCGCGTTCAA GGTCGAGCAGCAAAACAGCTTTGCGCCGGTCTTCAACATCAAGCTGGAGGGCGGCTCGGATCAGGAGATGGCTGACCGGC TGCTCGCACGTATCAATCCGCAGATCCAACGGGCGATGACCCAATCGATGAACAACAACAACCGGTCGGCGCTGTTCGAT GCGCCGCATCTGTAG
Upstream 100 bases:
>100_bases GCCTGCTGCGTGAGTGCGCGGTGAGCCCTCAGGCGGTCGACGATCTGACGCTTGAGGATCTGGTGTGGTGGTTGACGGAC TGATGTGACAGGGAGCGGAG
Downstream 100 bases:
>100_bases GAGCGCCGATGGATTTCGTGAAGAGCATCACGCAGGCGGCGACGCAGGCCAGCATCGCGGCCGAGCGCGTGCAGCACGTG AGCCGTGTCTACGAGCGCAA
Product: tail tape meausure protein
Products: NA
Alternate protein names: Bacteriophage Protein; Phage Tail Tape Measure Core Region; Pyocin R2_PP Tail Length Determination Protein; Bacteriophage Tail Protein; Tail Length Determinator Protein; Prophage; Tail Tape Meausure Protein; Phage Minor Tail Protein; Tail Tape Measure Protein; Phage Tail Tape-Measure Protein; Phage Tail Length Determination Protein; Bacteriophage Tail Length Determination Protein; Phage Tail Protein; Bacteriophage Protein; Tail Tape Measure Core Region; Phage Tail Tape Measure Protein Core Region
Number of amino acids: Translated: 804; Mature: 803
Protein sequence:
>804_residues MAREIALGIVIGGAVSATFGKAISDTQSKIVGLRKTAAEKGMWQRQIGETIKLQDEFRRLHRAGDSAAETIRRKLDSNLR TLRDAGIEVDRLDRAYARLGRTARGLELRAMGHERLSGGREAMRGAIGDSMKLTAAIAVPTMVSAQYQAIIRDIAIKAGI ARTGEERAMSDRIRRDASANGMNRNELAEAVNQMVAAGMDVDRALGFAPAVAKFSVGQGATSVETAKMIQALEQNADIKD PAAMLKALEAIAYLGKEGSFESVDMARWFPVLLAEMKKIGITGQDSVTQLGAMLQVQMKTAGNADEAANNLKNWFSKIGS GETERNYKKAGVDYEAKMKEAIGKGWSTLEASFVLARAYIERVDPAKAKQLAETAKSINAELDPAKRQKQIRAFEETMKT GDLFNDMQVKAALTAYLQNADLYSNLKRNAASASGEIEKDLKDRRDASKQIWKEVADQWDEAMRSIGDALRPVTDIAGEQ AKKAGGKVRDIVDASPRAAAAVIGVAGAAIAYRGARAAWSIGRGVLDVARGGWLARGGERSGKGGKGAKPGRGAQALDAL GAAASGVQRVFVVNMPGGGIGGGSVGDLIEGAAGVASGRAGKAGRFGRLGRALGGIVGRVLPYAGKIALAGTVLKLGLAA KDAYAVAAGDDPRARKAESFAGIGGSLAGGVVGAKLGASIGAFGGPLGAAFGGVAGGAIGTFAGQKLLGALTRWAFQQRG DTPEAARAVANAKALVEPGVAERRAFKVEQQNSFAPVFNIKLEGGSDQEMADRLLARINPQIQRAMTQSMNNNNRSALFD APHL
Sequences:
>Translated_804_residues MAREIALGIVIGGAVSATFGKAISDTQSKIVGLRKTAAEKGMWQRQIGETIKLQDEFRRLHRAGDSAAETIRRKLDSNLR TLRDAGIEVDRLDRAYARLGRTARGLELRAMGHERLSGGREAMRGAIGDSMKLTAAIAVPTMVSAQYQAIIRDIAIKAGI ARTGEERAMSDRIRRDASANGMNRNELAEAVNQMVAAGMDVDRALGFAPAVAKFSVGQGATSVETAKMIQALEQNADIKD PAAMLKALEAIAYLGKEGSFESVDMARWFPVLLAEMKKIGITGQDSVTQLGAMLQVQMKTAGNADEAANNLKNWFSKIGS GETERNYKKAGVDYEAKMKEAIGKGWSTLEASFVLARAYIERVDPAKAKQLAETAKSINAELDPAKRQKQIRAFEETMKT GDLFNDMQVKAALTAYLQNADLYSNLKRNAASASGEIEKDLKDRRDASKQIWKEVADQWDEAMRSIGDALRPVTDIAGEQ AKKAGGKVRDIVDASPRAAAAVIGVAGAAIAYRGARAAWSIGRGVLDVARGGWLARGGERSGKGGKGAKPGRGAQALDAL GAAASGVQRVFVVNMPGGGIGGGSVGDLIEGAAGVASGRAGKAGRFGRLGRALGGIVGRVLPYAGKIALAGTVLKLGLAA KDAYAVAAGDDPRARKAESFAGIGGSLAGGVVGAKLGASIGAFGGPLGAAFGGVAGGAIGTFAGQKLLGALTRWAFQQRG DTPEAARAVANAKALVEPGVAERRAFKVEQQNSFAPVFNIKLEGGSDQEMADRLLARINPQIQRAMTQSMNNNNRSALFD APHL >Mature_803_residues AREIALGIVIGGAVSATFGKAISDTQSKIVGLRKTAAEKGMWQRQIGETIKLQDEFRRLHRAGDSAAETIRRKLDSNLRT LRDAGIEVDRLDRAYARLGRTARGLELRAMGHERLSGGREAMRGAIGDSMKLTAAIAVPTMVSAQYQAIIRDIAIKAGIA RTGEERAMSDRIRRDASANGMNRNELAEAVNQMVAAGMDVDRALGFAPAVAKFSVGQGATSVETAKMIQALEQNADIKDP AAMLKALEAIAYLGKEGSFESVDMARWFPVLLAEMKKIGITGQDSVTQLGAMLQVQMKTAGNADEAANNLKNWFSKIGSG ETERNYKKAGVDYEAKMKEAIGKGWSTLEASFVLARAYIERVDPAKAKQLAETAKSINAELDPAKRQKQIRAFEETMKTG DLFNDMQVKAALTAYLQNADLYSNLKRNAASASGEIEKDLKDRRDASKQIWKEVADQWDEAMRSIGDALRPVTDIAGEQA KKAGGKVRDIVDASPRAAAAVIGVAGAAIAYRGARAAWSIGRGVLDVARGGWLARGGERSGKGGKGAKPGRGAQALDALG AAASGVQRVFVVNMPGGGIGGGSVGDLIEGAAGVASGRAGKAGRFGRLGRALGGIVGRVLPYAGKIALAGTVLKLGLAAK DAYAVAAGDDPRARKAESFAGIGGSLAGGVVGAKLGASIGAFGGPLGAAFGGVAGGAIGTFAGQKLLGALTRWAFQQRGD TPEAARAVANAKALVEPGVAERRAFKVEQQNSFAPVFNIKLEGGSDQEMADRLLARINPQIQRAMTQSMNNNNRSALFDA PHL
Specific function: Unknown
COG id: COG3941
COG function: function code R; Mu-like prophage protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 84369; Mature: 84238
Theoretical pI: Translated: 10.54; Mature: 10.54
Prosite motif: PS00104 EPSP_SYNTHASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAREIALGIVIGGAVSATFGKAISDTQSKIVGLRKTAAEKGMWQRQIGETIKLQDEFRRL CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHH HRAGDSAAETIRRKLDSNLRTLRDAGIEVDRLDRAYARLGRTARGLELRAMGHERLSGGR HHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHCCHHHHCCHH EAMRGAIGDSMKLTAAIAVPTMVSAQYQAIIRDIAIKAGIARTGEERAMSDRIRRDASAN HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC GMNRNELAEAVNQMVAAGMDVDRALGFAPAVAKFSVGQGATSVETAKMIQALEQNADIKD CCCHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCC PAAMLKALEAIAYLGKEGSFESVDMARWFPVLLAEMKKIGITGQDSVTQLGAMLQVQMKT HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH AGNADEAANNLKNWFSKIGSGETERNYKKAGVDYEAKMKEAIGKGWSTLEASFVLARAYI CCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH ERVDPAKAKQLAETAKSINAELDPAKRQKQIRAFEETMKTGDLFNDMQVKAALTAYLQNA HHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC DLYSNLKRNAASASGEIEKDLKDRRDASKQIWKEVADQWDEAMRSIGDALRPVTDIAGEQ HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKKAGGKVRDIVDASPRAAAAVIGVAGAAIAYRGARAAWSIGRGVLDVARGGWLARGGER HHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEECCCCC SGKGGKGAKPGRGAQALDALGAAASGVQRVFVVNMPGGGIGGGSVGDLIEGAAGVASGRA CCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCC GKAGRFGRLGRALGGIVGRVLPYAGKIALAGTVLKLGLAAKDAYAVAAGDDPRARKAESF CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH AGIGGSLAGGVVGAKLGASIGAFGGPLGAAFGGVAGGAIGTFAGQKLLGALTRWAFQQRG HCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC DTPEAARAVANAKALVEPGVAERRAFKVEQQNSFAPVFNIKLEGGSDQEMADRLLARINP CCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCH QIQRAMTQSMNNNNRSALFDAPHL HHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure AREIALGIVIGGAVSATFGKAISDTQSKIVGLRKTAAEKGMWQRQIGETIKLQDEFRRL CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHH HRAGDSAAETIRRKLDSNLRTLRDAGIEVDRLDRAYARLGRTARGLELRAMGHERLSGGR HHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHCCHHHHCCHH EAMRGAIGDSMKLTAAIAVPTMVSAQYQAIIRDIAIKAGIARTGEERAMSDRIRRDASAN HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC GMNRNELAEAVNQMVAAGMDVDRALGFAPAVAKFSVGQGATSVETAKMIQALEQNADIKD CCCHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCC PAAMLKALEAIAYLGKEGSFESVDMARWFPVLLAEMKKIGITGQDSVTQLGAMLQVQMKT HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH AGNADEAANNLKNWFSKIGSGETERNYKKAGVDYEAKMKEAIGKGWSTLEASFVLARAYI CCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH ERVDPAKAKQLAETAKSINAELDPAKRQKQIRAFEETMKTGDLFNDMQVKAALTAYLQNA HHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC DLYSNLKRNAASASGEIEKDLKDRRDASKQIWKEVADQWDEAMRSIGDALRPVTDIAGEQ HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKKAGGKVRDIVDASPRAAAAVIGVAGAAIAYRGARAAWSIGRGVLDVARGGWLARGGER HHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEECCCCC SGKGGKGAKPGRGAQALDALGAAASGVQRVFVVNMPGGGIGGGSVGDLIEGAAGVASGRA CCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCC GKAGRFGRLGRALGGIVGRVLPYAGKIALAGTVLKLGLAAKDAYAVAAGDDPRARKAESF CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH AGIGGSLAGGVVGAKLGASIGAFGGPLGAAFGGVAGGAIGTFAGQKLLGALTRWAFQQRG HCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC DTPEAARAVANAKALVEPGVAERRAFKVEQQNSFAPVFNIKLEGGSDQEMADRLLARINP CCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHCH QIQRAMTQSMNNNNRSALFDAPHL HHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA