| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
Click here to switch to the map view.
The map label for this gene is 237812897
Identifier: 237812897
GI number: 237812897
Start: 2599401
End: 2600621
Strand: Direct
Name: 237812897
Synonym: GBP346_A2656
Alternate gene names: NA
Gene position: 2599401-2600621 (Clockwise)
Preceding gene: 237812896
Following gene: 237812902
Centisome position: 63.42
GC content: 70.52
Gene sequence:
>1221_bases ATGAGCGCATCGCGACCGGCCGGCAACGACGATTACCCGTTCACTGTCCTGCGCGTCGCCACGCTCGCGCTCGACTACGC AAAAGGCTTTCTGCTGCCGCTGCTCGTCTATCAGCAAAGCGGCGGCAGCACGCTCGCGGTCGGCGTTGCCTATTTCGTCG AATTCATGCCGCGCGCGCTGCTCTCGCCGGTGTTCGGCTCGATCGTCGACCGCAGCGTCGGCAAGCGGCTCGCGTTCACC GTCGAGGGCTTGCGGCTCTCGTGCATGCTCGCGTGGACGCTCTTCGGCAACGCGCATTTCGGATGGATGCTGTCGAGCTT CGTGTCGCTGCTGTCCGGCATGTCGCTCGTGTACTACGAGGCCACCGCCGCGCAGCGGCTCGCGCCCGCCGGCCTGGGGC GCTTCCAGACGCGCTCGCAGTTGCTGGAGCCGCTCGCGCGGCTCGCGGGGCCGGGCATCGCCGCACTCGCCTTTTCCGGA CTGTCGCCGCGCGCGGCGATCGGCGCGCTCGCGATCGGCTACGCACTGTTGCTCGCGGCGTCGATCGCATGGCGCGCTGC GACCACGCGGCGATTCGCGACCGCCATCGGCCGCTGGACGCTCGCGGCCGAACGCGCCCGCTTCATGACGCTCGCGACCG ACGCGAAACTGCTCGCGCTCACGTTCGCGGGCGGCTTGCTGAATGTCTTCTTCGGAGTCTTCCAGGCGCTGATCGCGCCG ACGATGATCGGGCTGTACGGCATGCCGGCCGCGTACAGCGCGCTGCCCAATCTCGCGGGCGGCGCGATCTCGTTCGTGCT GTGCATCGTGGTCCCGCGCTGCGCGAAGGATCTGCGCCCCGCCGGATTCGGGCGCCTCGGCGTGCTGTGCCTCGCCCTCG CCGCCGTCCTGTCGGCCGCGAATCTGGGCGCGTGGCCCTTCTGCCTGGCGTTCGGACTGCTGATCGTCGGCAGCGCGTTC TTCGGCATTTTCTTCCGCGACAAGCGCTACGCGCTGATTCCCGAGCAGCAGCTCGCGCAGGGCATCGGCGCGACCACGTC GGTGATGACCGCGTTCCTGCCGGTCGCGGGGCTCGTGACCGCCGCGACGAACGCGTTTCCTTCGGTGCTCGTCATCGGCG CCGTCGGCCTCGTCGTGGCCGCCGCGCTGCTCGCCGCGATCCGCTTCGTCGGCGGCGGCGCACACGGCGCGGCGCGGCGC TTCGCGGCCGCGGACGACTAG
Upstream 100 bases:
>100_bases TGGAGGGCGCAACCCAGGACTGACGGGCATGCGCGCCGCATCACGCGGCGCGCATGCCCGACGCCTTCCCGCGCCCCATC CGTCAGAACGGACTCGCCCC
Downstream 100 bases:
>100_bases CCACGGACGACTAGCCGCGGGCGCGAAGCGCCGCGCCCTCAAAACGTGCCGCCCAGCAGGGCGAGCAGCGTGTACGAACG GCGCTGCGCGGTACCGAGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 406; Mature: 405
Protein sequence:
>406_residues MSASRPAGNDDYPFTVLRVATLALDYAKGFLLPLLVYQQSGGSTLAVGVAYFVEFMPRALLSPVFGSIVDRSVGKRLAFT VEGLRLSCMLAWTLFGNAHFGWMLSSFVSLLSGMSLVYYEATAAQRLAPAGLGRFQTRSQLLEPLARLAGPGIAALAFSG LSPRAAIGALAIGYALLLAASIAWRAATTRRFATAIGRWTLAAERARFMTLATDAKLLALTFAGGLLNVFFGVFQALIAP TMIGLYGMPAAYSALPNLAGGAISFVLCIVVPRCAKDLRPAGFGRLGVLCLALAAVLSAANLGAWPFCLAFGLLIVGSAF FGIFFRDKRYALIPEQQLAQGIGATTSVMTAFLPVAGLVTAATNAFPSVLVIGAVGLVVAAALLAAIRFVGGGAHGAARR FAAADD
Sequences:
>Translated_406_residues MSASRPAGNDDYPFTVLRVATLALDYAKGFLLPLLVYQQSGGSTLAVGVAYFVEFMPRALLSPVFGSIVDRSVGKRLAFT VEGLRLSCMLAWTLFGNAHFGWMLSSFVSLLSGMSLVYYEATAAQRLAPAGLGRFQTRSQLLEPLARLAGPGIAALAFSG LSPRAAIGALAIGYALLLAASIAWRAATTRRFATAIGRWTLAAERARFMTLATDAKLLALTFAGGLLNVFFGVFQALIAP TMIGLYGMPAAYSALPNLAGGAISFVLCIVVPRCAKDLRPAGFGRLGVLCLALAAVLSAANLGAWPFCLAFGLLIVGSAF FGIFFRDKRYALIPEQQLAQGIGATTSVMTAFLPVAGLVTAATNAFPSVLVIGAVGLVVAAALLAAIRFVGGGAHGAARR FAAADD >Mature_405_residues SASRPAGNDDYPFTVLRVATLALDYAKGFLLPLLVYQQSGGSTLAVGVAYFVEFMPRALLSPVFGSIVDRSVGKRLAFTV EGLRLSCMLAWTLFGNAHFGWMLSSFVSLLSGMSLVYYEATAAQRLAPAGLGRFQTRSQLLEPLARLAGPGIAALAFSGL SPRAAIGALAIGYALLLAASIAWRAATTRRFATAIGRWTLAAERARFMTLATDAKLLALTFAGGLLNVFFGVFQALIAPT MIGLYGMPAAYSALPNLAGGAISFVLCIVVPRCAKDLRPAGFGRLGVLCLALAAVLSAANLGAWPFCLAFGLLIVGSAFF GIFFRDKRYALIPEQQLAQGIGATTSVMTAFLPVAGLVTAATNAFPSVLVIGAVGLVVAAALLAAIRFVGGGAHGAARRF AAADD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42244; Mature: 42113
Theoretical pI: Translated: 10.50; Mature: 10.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSASRPAGNDDYPFTVLRVATLALDYAKGFLLPLLVYQQSGGSTLAVGVAYFVEFMPRAL CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH LSPVFGSIVDRSVGKRLAFTVEGLRLSCMLAWTLFGNAHFGWMLSSFVSLLSGMSLVYYE HHHHHHHHHHHHHCCHHEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEE ATAAQRLAPAGLGRFQTRSQLLEPLARLAGPGIAALAFSGLSPRAAIGALAIGYALLLAA HHHHHHHCHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH SIAWRAATTRRFATAIGRWTLAAERARFMTLATDAKLLALTFAGGLLNVFFGVFQALIAP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH TMIGLYGMPAAYSALPNLAGGAISFVLCIVVPRCAKDLRPAGFGRLGVLCLALAAVLSAA HHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC NLGAWPFCLAFGLLIVGSAFFGIFFRDKRYALIPEQQLAQGIGATTSVMTAFLPVAGLVT CCCCHHHHHHHHHHHHHHHHHHHHEECCCEEECCHHHHHHHCCHHHHHHHHHHHHHHHHH AATNAFPSVLVIGAVGLVVAAALLAAIRFVGGGAHGAARRFAAADD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCC >Mature Secondary Structure SASRPAGNDDYPFTVLRVATLALDYAKGFLLPLLVYQQSGGSTLAVGVAYFVEFMPRAL CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH LSPVFGSIVDRSVGKRLAFTVEGLRLSCMLAWTLFGNAHFGWMLSSFVSLLSGMSLVYYE HHHHHHHHHHHHHCCHHEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEE ATAAQRLAPAGLGRFQTRSQLLEPLARLAGPGIAALAFSGLSPRAAIGALAIGYALLLAA HHHHHHHCHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH SIAWRAATTRRFATAIGRWTLAAERARFMTLATDAKLLALTFAGGLLNVFFGVFQALIAP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH TMIGLYGMPAAYSALPNLAGGAISFVLCIVVPRCAKDLRPAGFGRLGVLCLALAAVLSAA HHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC NLGAWPFCLAFGLLIVGSAFFGIFFRDKRYALIPEQQLAQGIGATTSVMTAFLPVAGLVT CCCCHHHHHHHHHHHHHHHHHHHHEECCCEEECCHHHHHHHCCHHHHHHHHHHHHHHHHH AATNAFPSVLVIGAVGLVVAAALLAAIRFVGGGAHGAARRFAAADD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA