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The map label for this gene is ydhM [C]

Identifier: 237812866

GI number: 237812866

Start: 2559114

End: 2559935

Strand: Direct

Name: ydhM [C]

Synonym: GBP346_A2625

Alternate gene names: 237812866

Gene position: 2559114-2559935 (Clockwise)

Preceding gene: 237812862

Following gene: 237812891

Centisome position: 62.44

GC content: 65.69

Gene sequence:

>822_bases
ATGCCGCTGCCGTGCGAATCGACACGAATCGACACGAATCGGCCCCCGGACGCCACCGCCCTGCCCGCATCGCGAACCGG
CCGCCTCGGTCGACGTACCGCAAGCGGCGGGCCGAAGCCTGCAAGCGGCGCCCGTTCGATAACGGGCACGCCGATCATCG
GCGAAGGCCCATTGAATAACGATCGTTATGGTAACGGGCGTTATTCTATACTTCCATCGACGTCAATCGAACAAAGCTTC
GAAACCGAAACGAACATGCGCTATTCACCGAAACACAAGGAAGCCAGCCGGGCGCGCCTCGTCGAGGCGGGCGCCGCGCT
CGCGAAGCGCAACGGCTTCGCGAACACCGGCATGGACGCGCTCACCGCGGCGGCCGGCGTGACGACGGGCGCGTTCTATT
CGCAATTCCGCTCGAAGCCGGAATTTCTGTACGCGATCGTCGAGCACGAGATGTCGAAGGTGCTCGCGACGGTCGAGAAC
CGCTCGAAGGATGACCTCGTCGCCACGCTGCGCAGCTATCTGAGCACCGCGCACGCGGATCATCCGGAGCTCGGCTGCCC
GGTGCCTACCCTCGGCGCGGAAATCGCGCGCGCCGACGTCGCGACCCGCAGGATGTTCGAGGATCTGATCAAGCGCTTCC
AGGCGTCGCTCGCGACCGCGCTGCACGACGACGAAGCGGCATGGACGCTCGGTTGCGCGGCGATCGGCGCGGTGCTCGTC
GCGCGCGCGATGGCGAGCACCGAGCGCCGCAGCGAAGTGCTGCGCTCGGTGCTCGCGTATACGATGCGATCGTTCGACGC
CGACGCACGGAAAAAGAAGTGA

Upstream 100 bases:

>100_bases
GAACTTAATGGGCGTGATTCCGGCTGGGCCCAACTACGCGACATACGGCCGAACGTTCCGCAACACTCGCGGTATCCGAA
TTCAGTACCGTCGGCTGCCC

Downstream 100 bases:

>100_bases
CGCACGCGCATGCGCGCCGCGCGCCGGCGCGCAAACCGGCCGGGCAACCCCGCGCACGGCCGATTCGGCGCCGCTAGGCG
GCGCCGGCCGCCCCCGTCGC

Product: transcriptional regulator, TetR family

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator TetR Family; Regulatory Protein TetR

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MPLPCESTRIDTNRPPDATALPASRTGRLGRRTASGGPKPASGARSITGTPIIGEGPLNNDRYGNGRYSILPSTSIEQSF
ETETNMRYSPKHKEASRARLVEAGAALAKRNGFANTGMDALTAAAGVTTGAFYSQFRSKPEFLYAIVEHEMSKVLATVEN
RSKDDLVATLRSYLSTAHADHPELGCPVPTLGAEIARADVATRRMFEDLIKRFQASLATALHDDEAAWTLGCAAIGAVLV
ARAMASTERRSEVLRSVLAYTMRSFDADARKKK

Sequences:

>Translated_273_residues
MPLPCESTRIDTNRPPDATALPASRTGRLGRRTASGGPKPASGARSITGTPIIGEGPLNNDRYGNGRYSILPSTSIEQSF
ETETNMRYSPKHKEASRARLVEAGAALAKRNGFANTGMDALTAAAGVTTGAFYSQFRSKPEFLYAIVEHEMSKVLATVEN
RSKDDLVATLRSYLSTAHADHPELGCPVPTLGAEIARADVATRRMFEDLIKRFQASLATALHDDEAAWTLGCAAIGAVLV
ARAMASTERRSEVLRSVLAYTMRSFDADARKKK
>Mature_272_residues
PLPCESTRIDTNRPPDATALPASRTGRLGRRTASGGPKPASGARSITGTPIIGEGPLNNDRYGNGRYSILPSTSIEQSFE
TETNMRYSPKHKEASRARLVEAGAALAKRNGFANTGMDALTAAAGVTTGAFYSQFRSKPEFLYAIVEHEMSKVLATVENR
SKDDLVATLRSYLSTAHADHPELGCPVPTLGAEIARADVATRRMFEDLIKRFQASLATALHDDEAAWTLGCAAIGAVLVA
RAMASTERRSEVLRSVLAYTMRSFDADARKKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29404; Mature: 29272

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLPCESTRIDTNRPPDATALPASRTGRLGRRTASGGPKPASGARSITGTPIIGEGPLNN
CCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
DRYGNGRYSILPSTSIEQSFETETNMRYSPKHKEASRARLVEAGAALAKRNGFANTGMDA
CCCCCCEEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
LTAAAGVTTGAFYSQFRSKPEFLYAIVEHEMSKVLATVENRSKDDLVATLRSYLSTAHAD
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
HPELGCPVPTLGAEIARADVATRRMFEDLIKRFQASLATALHDDEAAWTLGCAAIGAVLV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ARAMASTERRSEVLRSVLAYTMRSFDADARKKK
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC
>Mature Secondary Structure 
PLPCESTRIDTNRPPDATALPASRTGRLGRRTASGGPKPASGARSITGTPIIGEGPLNN
CCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
DRYGNGRYSILPSTSIEQSFETETNMRYSPKHKEASRARLVEAGAALAKRNGFANTGMDA
CCCCCCEEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
LTAAAGVTTGAFYSQFRSKPEFLYAIVEHEMSKVLATVENRSKDDLVATLRSYLSTAHAD
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
HPELGCPVPTLGAEIARADVATRRMFEDLIKRFQASLATALHDDEAAWTLGCAAIGAVLV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ARAMASTERRSEVLRSVLAYTMRSFDADARKKK
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA