| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
Click here to switch to the map view.
The map label for this gene is pcp [H]
Identifier: 237812789
GI number: 237812789
Start: 2475627
End: 2477513
Strand: Reverse
Name: pcp [H]
Synonym: GBP346_A2543
Alternate gene names: 237812789
Gene position: 2477513-2475627 (Counterclockwise)
Preceding gene: 237812790
Following gene: 237812788
Centisome position: 60.45
GC content: 70.8
Gene sequence:
>1887_bases ATGACGTCAAGAAAATGGGCCAGGTCTCGCGCTTCGCAGGCGAAGCATGCGATTTACGCGGCGACGTTCTTTGCCGCGGC GGCATTGAGCGCGCACGCGGCGGCGGCATGGGTCGACACGCAAACCGGCGCGTATCCGGCGCTTGCGCAGCAGGCGCTTG CCGCGTCGCAAGCTTCGGCGGCGGCAACCGCGGCCGGAAAGGCGATCGACACGGCGCCCGGCGAGCCGGTGCGGGTCGTC GTCAGTCTCAATCTCAACGACGAAGCGAGGCTCGATCGCTTCCTGCGCGATCTGCATACGCCCGGCAGTGCCGCTTACGG CCGGCATCTGACGCCCGCCGAATTCGCCGCGCAGTATGCGCCGACGCCGCAGCAGGTCGCGCTCGTCGAAGCGCATCTGC GCCGGGCCGGATTCCGCGACATCGAGGTGGCGCCGAACCGGCTGCTGATCTCGGCGACGGGCACCGCCGCCGCGGTCAAG ACGGCGTTCAACACGCGGCTCAAGCGCTTTACGCTCGAAGGCCGGCGCGTGTATGCGAACCAGGACGCGGCGCAGGTGCC CGCCGAGCTCGGCCGAATCGTTGGCGCGGTGCTCGGGCTCGATAACGCGACGCTCGCGCGCACGTACAACCGCCAGGCGG CGGTGACGGGCGCGGTCGGCGGCGCGAAGGCGTCGCTGGCCGCGCGCGCGAGCGACGCGTCGGCCGCCGCGAGCGGCGCG CCCGTGCTGACGGGACACGATCCGCTCGAATTCTCGCGAATCTATCGCGCGGGCTCGACGCCGACGGCGTCGCAGACGAC GGTCGGCGTGATCATGGCGGGCGATGCGGCGCCCGTGCTGCGGGATCTCGATACGTTCGCGGCGAAGGCCGGGCTCGCGC GCGTCGCGGCGACGGTCACGCGTACCGGGCCGCCCGGCAGCGATTACAGCGACAATTCGGGCCTGAGCGAATGGGATATG GACAGCCAGGCGATCGTCGGCGCGGCGGGCGGCGCGGTGAAGGGGCTTGTGCTCTACGCGGCGCCCTCGATGCTGCTCTC CGACATCACCTCGGCGTACAACCGCGCGGTCGTCGACAACGTCGCGAAGGTGATCAACGTGTCGCTCGGCGTGTGCGAGG CGGACGCACGCGCGTCCGGCACGCAGGCGGCGGACGACCGCATCTTCAAGAGCGCGGTCGCGCAGGGGCAGACGTTCGTC GTCGCGGCGGGCGACGCGGGCGCGTACGAATGCAGCGTGAGCCGCGTGTCGGGCGGGCAGGGCGTGCCGGCGCGATCGAA CTATTCGGTGAGCGAGCCCGCGACGTCGCCGTACGTCGTCGCGGTCGGCGGCACGACGCTGTCGACCGACAGGACGACGC TCGCCTACGCGGGCGAAGTCGCGTGGAACGAGGGCTTGCAGCCGATCGGCGTGTACGACGCGTACGGCAGTTACGACGGC ACGAGGCGTCTGTGGGCGACGGGCGGCGGCTACAGCCGAAGCGAAGCGGCACCGGCGTGGCAGCGAAGCGTGCTCGGCGC GTCGGCGAAAGCGCGCGCGCTGCCCGATGTCGCATTCGATGCGGACGGCCGCAGCGGCGCGCACGTCTACGTGAACGGCC GGACCGAGCAATGGGGCGGCACGAGCCTCGCGGCGCCGATCTTCACGGGCATCTGGGCGCGCGTGCAATCCGACAACGGC AACCGGCTCGGTTTTCCGCTCGCGAGCCTCTATCGCTACGCGCCGGCCAACGGCGCGTTCGCGCATGACGTGAAATCCGG CAACAACGGCTCGGGCGGCTATGGCTACAAGGCCGGTGCGGGCTGGGATCCGGTGACGGGCTTCGGCAGCCTCGACATCG CGAACTTCGCCGCGTTCGTCAAGCAGACGGCCGATTTCGCGCGATAA
Upstream 100 bases:
>100_bases CGCCCTCGGGCAGCAGGCGCGGCGGTGCTCATCCGCGAGCGGTTCGGCGGGCCGCTTTCATGGTGTTCGACTGTATTCAA ACCGAATGAGGAACGACGAA
Downstream 100 bases:
>100_bases GTGGCGCCGCGGCGCGCGAAACCTTAGGGGGCGTGGCGCGGTGGTCGGGCGTTGGCGTTTATGTTGACGTTGGCATCGGC ATCGGCATTGGCATTGGCAT
Product: serine protease, subtilase family
Products: NA
Alternate protein names: Pepstatin-insensitive carboxyl proteinase; Pseudomonapepsin [H]
Number of amino acids: Translated: 628; Mature: 627
Protein sequence:
>628_residues MTSRKWARSRASQAKHAIYAATFFAAAALSAHAAAAWVDTQTGAYPALAQQALAASQASAAATAAGKAIDTAPGEPVRVV VSLNLNDEARLDRFLRDLHTPGSAAYGRHLTPAEFAAQYAPTPQQVALVEAHLRRAGFRDIEVAPNRLLISATGTAAAVK TAFNTRLKRFTLEGRRVYANQDAAQVPAELGRIVGAVLGLDNATLARTYNRQAAVTGAVGGAKASLAARASDASAAASGA PVLTGHDPLEFSRIYRAGSTPTASQTTVGVIMAGDAAPVLRDLDTFAAKAGLARVAATVTRTGPPGSDYSDNSGLSEWDM DSQAIVGAAGGAVKGLVLYAAPSMLLSDITSAYNRAVVDNVAKVINVSLGVCEADARASGTQAADDRIFKSAVAQGQTFV VAAGDAGAYECSVSRVSGGQGVPARSNYSVSEPATSPYVVAVGGTTLSTDRTTLAYAGEVAWNEGLQPIGVYDAYGSYDG TRRLWATGGGYSRSEAAPAWQRSVLGASAKARALPDVAFDADGRSGAHVYVNGRTEQWGGTSLAAPIFTGIWARVQSDNG NRLGFPLASLYRYAPANGAFAHDVKSGNNGSGGYGYKAGAGWDPVTGFGSLDIANFAAFVKQTADFAR
Sequences:
>Translated_628_residues MTSRKWARSRASQAKHAIYAATFFAAAALSAHAAAAWVDTQTGAYPALAQQALAASQASAAATAAGKAIDTAPGEPVRVV VSLNLNDEARLDRFLRDLHTPGSAAYGRHLTPAEFAAQYAPTPQQVALVEAHLRRAGFRDIEVAPNRLLISATGTAAAVK TAFNTRLKRFTLEGRRVYANQDAAQVPAELGRIVGAVLGLDNATLARTYNRQAAVTGAVGGAKASLAARASDASAAASGA PVLTGHDPLEFSRIYRAGSTPTASQTTVGVIMAGDAAPVLRDLDTFAAKAGLARVAATVTRTGPPGSDYSDNSGLSEWDM DSQAIVGAAGGAVKGLVLYAAPSMLLSDITSAYNRAVVDNVAKVINVSLGVCEADARASGTQAADDRIFKSAVAQGQTFV VAAGDAGAYECSVSRVSGGQGVPARSNYSVSEPATSPYVVAVGGTTLSTDRTTLAYAGEVAWNEGLQPIGVYDAYGSYDG TRRLWATGGGYSRSEAAPAWQRSVLGASAKARALPDVAFDADGRSGAHVYVNGRTEQWGGTSLAAPIFTGIWARVQSDNG NRLGFPLASLYRYAPANGAFAHDVKSGNNGSGGYGYKAGAGWDPVTGFGSLDIANFAAFVKQTADFAR >Mature_627_residues TSRKWARSRASQAKHAIYAATFFAAAALSAHAAAAWVDTQTGAYPALAQQALAASQASAAATAAGKAIDTAPGEPVRVVV SLNLNDEARLDRFLRDLHTPGSAAYGRHLTPAEFAAQYAPTPQQVALVEAHLRRAGFRDIEVAPNRLLISATGTAAAVKT AFNTRLKRFTLEGRRVYANQDAAQVPAELGRIVGAVLGLDNATLARTYNRQAAVTGAVGGAKASLAARASDASAAASGAP VLTGHDPLEFSRIYRAGSTPTASQTTVGVIMAGDAAPVLRDLDTFAAKAGLARVAATVTRTGPPGSDYSDNSGLSEWDMD SQAIVGAAGGAVKGLVLYAAPSMLLSDITSAYNRAVVDNVAKVINVSLGVCEADARASGTQAADDRIFKSAVAQGQTFVV AAGDAGAYECSVSRVSGGQGVPARSNYSVSEPATSPYVVAVGGTTLSTDRTTLAYAGEVAWNEGLQPIGVYDAYGSYDGT RRLWATGGGYSRSEAAPAWQRSVLGASAKARALPDVAFDADGRSGAHVYVNGRTEQWGGTSLAAPIFTGIWARVQSDNGN RLGFPLASLYRYAPANGAFAHDVKSGNNGSGGYGYKAGAGWDPVTGFGSLDIANFAAFVKQTADFAR
Specific function: Unknown
COG id: COG4934
COG function: function code O; Predicted protease
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S53 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015366 - InterPro: IPR000209 - InterPro: IPR022398 - InterPro: IPR009020 [H]
Pfam domain/function: PF00082 Peptidase_S8; PF09286 Pro-kuma_activ [H]
EC number: =3.4.21.100 [H]
Molecular weight: Translated: 64597; Mature: 64466
Theoretical pI: Translated: 9.28; Mature: 9.28
Prosite motif: PS00138 SUBTILASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSRKWARSRASQAKHAIYAATFFAAAALSAHAAAAWVDTQTGAYPALAQQALAASQASA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHH AATAAGKAIDTAPGEPVRVVVSLNLNDEARLDRFLRDLHTPGSAAYGRHLTPAEFAAQYA HHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCC PTPQQVALVEAHLRRAGFRDIEVAPNRLLISATGTAAAVKTAFNTRLKRFTLEGRRVYAN CCHHHHHHHHHHHHHCCCCCEEECCCEEEEEECCCHHHHHHHHHHHHHHEEECCCEEEEC QDAAQVPAELGRIVGAVLGLDNATLARTYNRQAAVTGAVGGAKASLAARASDASAAASGA CCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEEECCCCCHHHHHHCCCCCHHHCCCC PVLTGHDPLEFSRIYRAGSTPTASQTTVGVIMAGDAAPVLRDLDTFAAKAGLARVAATVT CEEECCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHC RTGPPGSDYSDNSGLSEWDMDSQAIVGAAGGAVKGLVLYAAPSMLLSDITSAYNRAVVDN CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAKVINVSLGVCEADARASGTQAADDRIFKSAVAQGQTFVVAAGDAGAYECSVSRVSGGQ HHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEECCCCC GVPARSNYSVSEPATSPYVVAVGGTTLSTDRTTLAYAGEVAWNEGLQPIGVYDAYGSYDG CCCCCCCCCCCCCCCCCEEEEECCEEECCCCEEEEEECCHHHHCCCCCCEEEECCCCCCC TRRLWATGGGYSRSEAAPAWQRSVLGASAKARALPDVAFDADGRSGAHVYVNGRTEQWGG CEEEEECCCCCCCCCCCCHHHHHHHCCCCHHHCCCCCEECCCCCCCCEEEECCCCCCCCC TSLAAPIFTGIWARVQSDNGNRLGFPLASLYRYAPANGAFAHDVKSGNNGSGGYGYKAGA CCHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCC GWDPVTGFGSLDIANFAAFVKQTADFAR CCCCCCCCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure TSRKWARSRASQAKHAIYAATFFAAAALSAHAAAAWVDTQTGAYPALAQQALAASQASA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHH AATAAGKAIDTAPGEPVRVVVSLNLNDEARLDRFLRDLHTPGSAAYGRHLTPAEFAAQYA HHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCC PTPQQVALVEAHLRRAGFRDIEVAPNRLLISATGTAAAVKTAFNTRLKRFTLEGRRVYAN CCHHHHHHHHHHHHHCCCCCEEECCCEEEEEECCCHHHHHHHHHHHHHHEEECCCEEEEC QDAAQVPAELGRIVGAVLGLDNATLARTYNRQAAVTGAVGGAKASLAARASDASAAASGA CCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEEECCCCCHHHHHHCCCCCHHHCCCC PVLTGHDPLEFSRIYRAGSTPTASQTTVGVIMAGDAAPVLRDLDTFAAKAGLARVAATVT CEEECCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHC RTGPPGSDYSDNSGLSEWDMDSQAIVGAAGGAVKGLVLYAAPSMLLSDITSAYNRAVVDN CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VAKVINVSLGVCEADARASGTQAADDRIFKSAVAQGQTFVVAAGDAGAYECSVSRVSGGQ HHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEECCCCC GVPARSNYSVSEPATSPYVVAVGGTTLSTDRTTLAYAGEVAWNEGLQPIGVYDAYGSYDG CCCCCCCCCCCCCCCCCEEEEECCEEECCCCEEEEEECCHHHHCCCCCCEEEECCCCCCC TRRLWATGGGYSRSEAAPAWQRSVLGASAKARALPDVAFDADGRSGAHVYVNGRTEQWGG CEEEEECCCCCCCCCCCCHHHHHHHCCCCHHHCCCCCEECCCCCCCCEEEECCCCCCCCC TSLAAPIFTGIWARVQSDNGNRLGFPLASLYRYAPANGAFAHDVKSGNNGSGGYGYKAGA CCHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCC GWDPVTGFGSLDIANFAAFVKQTADFAR CCCCCCCCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7929375; 8576087; 10488127; 11747435; 11323721 [H]