| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is hyi [H]
Identifier: 237812621
GI number: 237812621
Start: 2330657
End: 2331445
Strand: Direct
Name: hyi [H]
Synonym: GBP346_A2371
Alternate gene names: 237812621
Gene position: 2330657-2331445 (Clockwise)
Preceding gene: 237812620
Following gene: 237812622
Centisome position: 56.87
GC content: 68.57
Gene sequence:
>789_bases ATGCCGAAATTCGCCGCCAACCTGACGATGCTGTTCAACGAAGTCCCGTTTCTCGAGCGCTTCGCCGCAGCGGCCGAAGC GGGCTTCAGCGCCGTCGAGTTCCTGTTTCCCTATCCGTACGCGAAGGACGAGCTCGCCGAGCGGCTCGACGCGAATCGCC TGCGCCTCGTGCTGCACAACCTGCCCGCGGGCCACTGGGATCAGGGCGAGCGCGGAATCGCGTGCCTGCCCGATCGCATC GGCGAATTCCAGGACGGCGTCGGCCGCGCGATCGACTATGCGCGCGCGCTGAAGGTGCCGCAGTTGAATTGCCTCGTCGG CATCGCGCCCGCGAGCGTCGGGCGCGACACGGCGCTCGCGACGATCGTCGAGAACCTGCGCTTCGCCGCCGCCGAGCTGA AGAAGGCGGGCCTGCGCCTGCTCGTCGAGCCATGCAACGCGTACGACATCCCCGGCTTCGCGCTGAACCGCTCCGCCGAG GCGCTCGACGTGATCCGCGCGGTCGGCGCCGACAACCTCTTCCTGCAGTACGACATCTATCACATGCAGCGCATGGAGGG CGAGCTCGCGGCGACGATCCGCCGGCACATCGGCGCGATCGCGCATGTCCAGATCGCGGACAACCCGGGCCGGCACGAAC CGGGCACGGGCGAGATCCATTACGCGTTCCTGTTCGATCTGCTCGACGAGCTCGGCTACGACGGCTATGTCGGCTGCGAA TACAAGCCGCGCACGACGACGGCCGAGGGCCTCGGCTGGCTGCGGCGGATCGCGCGCGTCGCCGCGTGA
Upstream 100 bases:
>100_bases CGCACCGCCCGCCCGATCGATCAGTTCGACTGATCGATTCGGCCGGCTCGCTCACCTGGCTTCATCCGACCTCAACTGAC CGACCAGCGAGACCTCATCC
Downstream 100 bases:
>100_bases TCCGCGCACGCGTCGACGCCCGAGCTCATCCGCGCATCACTCATTCATTCCGAATTCGCGATCCACAGGATTCGCCAGAC TCACAGGAGACATTGCAATG
Product: hydroxypyruvate isomerase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 262; Mature: 261
Protein sequence:
>262_residues MPKFAANLTMLFNEVPFLERFAAAAEAGFSAVEFLFPYPYAKDELAERLDANRLRLVLHNLPAGHWDQGERGIACLPDRI GEFQDGVGRAIDYARALKVPQLNCLVGIAPASVGRDTALATIVENLRFAAAELKKAGLRLLVEPCNAYDIPGFALNRSAE ALDVIRAVGADNLFLQYDIYHMQRMEGELAATIRRHIGAIAHVQIADNPGRHEPGTGEIHYAFLFDLLDELGYDGYVGCE YKPRTTTAEGLGWLRRIARVAA
Sequences:
>Translated_262_residues MPKFAANLTMLFNEVPFLERFAAAAEAGFSAVEFLFPYPYAKDELAERLDANRLRLVLHNLPAGHWDQGERGIACLPDRI GEFQDGVGRAIDYARALKVPQLNCLVGIAPASVGRDTALATIVENLRFAAAELKKAGLRLLVEPCNAYDIPGFALNRSAE ALDVIRAVGADNLFLQYDIYHMQRMEGELAATIRRHIGAIAHVQIADNPGRHEPGTGEIHYAFLFDLLDELGYDGYVGCE YKPRTTTAEGLGWLRRIARVAA >Mature_261_residues PKFAANLTMLFNEVPFLERFAAAAEAGFSAVEFLFPYPYAKDELAERLDANRLRLVLHNLPAGHWDQGERGIACLPDRIG EFQDGVGRAIDYARALKVPQLNCLVGIAPASVGRDTALATIVENLRFAAAELKKAGLRLLVEPCNAYDIPGFALNRSAEA LDVIRAVGADNLFLQYDIYHMQRMEGELAATIRRHIGAIAHVQIADNPGRHEPGTGEIHYAFLFDLLDELGYDGYVGCEY KPRTTTAEGLGWLRRIARVAA
Specific function: Catalyzes the reversible isomerization between hydroxypyruvate and 2-hydroxy-3-oxopropanoate (also termed tartronate semialdehyde) [H]
COG id: COG3622
COG function: function code G; Hydroxypyruvate isomerase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hyi family [H]
Homologues:
Organism=Homo sapiens, GI300068962, Length=260, Percent_Identity=41.1538461538462, Blast_Score=184, Evalue=5e-47, Organism=Homo sapiens, GI300068964, Length=243, Percent_Identity=39.0946502057613, Blast_Score=156, Evalue=2e-38, Organism=Escherichia coli, GI1786718, Length=254, Percent_Identity=56.2992125984252, Blast_Score=291, Evalue=4e-80, Organism=Escherichia coli, GI1789095, Length=254, Percent_Identity=45.6692913385827, Blast_Score=234, Evalue=3e-63, Organism=Caenorhabditis elegans, GI17552022, Length=254, Percent_Identity=38.5826771653543, Blast_Score=180, Evalue=7e-46, Organism=Drosophila melanogaster, GI17530883, Length=262, Percent_Identity=35.4961832061069, Blast_Score=166, Evalue=2e-41,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017643 - InterPro: IPR013022 - InterPro: IPR012307 [H]
Pfam domain/function: PF01261 AP_endonuc_2 [H]
EC number: =5.3.1.22 [H]
Molecular weight: Translated: 28882; Mature: 28751
Theoretical pI: Translated: 5.63; Mature: 5.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKFAANLTMLFNEVPFLERFAAAAEAGFSAVEFLFPYPYAKDELAERLDANRLRLVLHN CCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHH LPAGHWDQGERGIACLPDRIGEFQDGVGRAIDYARALKVPQLNCLVGIAPASVGRDTALA CCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHH TIVENLRFAAAELKKAGLRLLVEPCNAYDIPGFALNRSAEALDVIRAVGADNLFLQYDIY HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCCCHHHHHHHHHHCCCCEEEEEHHH HMQRMEGELAATIRRHIGAIAHVQIADNPGRHEPGTGEIHYAFLFDLLDELGYDGYVGCE HHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCC YKPRTTTAEGLGWLRRIARVAA CCCCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure PKFAANLTMLFNEVPFLERFAAAAEAGFSAVEFLFPYPYAKDELAERLDANRLRLVLHN CCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHH LPAGHWDQGERGIACLPDRIGEFQDGVGRAIDYARALKVPQLNCLVGIAPASVGRDTALA CCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHH TIVENLRFAAAELKKAGLRLLVEPCNAYDIPGFALNRSAEALDVIRAVGADNLFLQYDIY HHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHCCCHHHHHHHHHHCCCCEEEEEHHH HMQRMEGELAATIRRHIGAIAHVQIADNPGRHEPGTGEIHYAFLFDLLDELGYDGYVGCE HHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCC YKPRTTTAEGLGWLRRIARVAA CCCCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8440684; 10561547; 9278503 [H]