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The map label for this gene is hin [H]

Identifier: 237812327

GI number: 237812327

Start: 2042863

End: 2043507

Strand: Reverse

Name: hin [H]

Synonym: GBP346_A2075

Alternate gene names: 237812327

Gene position: 2043507-2042863 (Counterclockwise)

Preceding gene: 237812330

Following gene: 237812323

Centisome position: 49.86

GC content: 53.64

Gene sequence:

>645_bases
TTGCAATGCTCAGTCAAGCCTGAGGTCACGATGCGTATCGGCTATGCGCGCGTATCGACCGAGGAACAATGCCTTGCGCT
GCAAGAGGATGCTTTGACTCGAGCAGGATGTGACTTGATTTTCAGCGACCACGGCATTTCGGGCACCAATTTCTGCCGAC
CTGGCCTCGATCAAGCCCTCCAACACCTTGGACGAGGCGATACTTTGGTCGTTTGGCGTCTCGATCGACTCGGACGTTCG
CTGACCAAACTCGTCGACATGATCGATTTATTGGGCCAACGCGATATCCATTTTGAATCGCTAACAGAATCGATCAATAC
ACAATCACCGAGTGGCACGCTGATTTTTCATATCATTGCTGCGCTCGCACAGTTCGAGCGTGCGTTGATCAGCGAGCGGA
CGCGTGCGGGTCTCGCGGCAGCAAAGAACCGTGGTGTACGTGTGGGGCGGCCAAGGTCGCTCACCGAATATCAAGCAAGT
CAGGCAATTCGCCTATTGTCGGAACGCTCGATCGCCGCAGTTGCGAAGGAATTTGGTGTGCATCCGCAGACACTTAGGCG
ATTGTGGGCAATCCATAAGCGGCACACAGAATCCGCAGGTGAATTTAACGAATCGAGTACATCACCGTGCGTCAAAGACG
AATGA

Upstream 100 bases:

>100_bases
ACGACACAATTAACGATAATGAAAAGTAAGGGCTACGTTGGTGTAGCACGGCAGGCAATCGCTCGGTATGTGATAGAAAT
TCAGATTTTCTATCGACGCA

Downstream 100 bases:

>100_bases
TCGTATGCGGCCAATGAATGACGCCGATTCGGTTCCACATCGAACCGCTGTGCCAATTCAACCAGCGCCCGCTCGCCCTT
GATCGCTGCCAGCGCCAGCT

Product: recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MQCSVKPEVTMRIGYARVSTEEQCLALQEDALTRAGCDLIFSDHGISGTNFCRPGLDQALQHLGRGDTLVVWRLDRLGRS
LTKLVDMIDLLGQRDIHFESLTESINTQSPSGTLIFHIIAALAQFERALISERTRAGLAAAKNRGVRVGRPRSLTEYQAS
QAIRLLSERSIAAVAKEFGVHPQTLRRLWAIHKRHTESAGEFNESSTSPCVKDE

Sequences:

>Translated_214_residues
MQCSVKPEVTMRIGYARVSTEEQCLALQEDALTRAGCDLIFSDHGISGTNFCRPGLDQALQHLGRGDTLVVWRLDRLGRS
LTKLVDMIDLLGQRDIHFESLTESINTQSPSGTLIFHIIAALAQFERALISERTRAGLAAAKNRGVRVGRPRSLTEYQAS
QAIRLLSERSIAAVAKEFGVHPQTLRRLWAIHKRHTESAGEFNESSTSPCVKDE
>Mature_214_residues
MQCSVKPEVTMRIGYARVSTEEQCLALQEDALTRAGCDLIFSDHGISGTNFCRPGLDQALQHLGRGDTLVVWRLDRLGRS
LTKLVDMIDLLGQRDIHFESLTESINTQSPSGTLIFHIIAALAQFERALISERTRAGLAAAKNRGVRVGRPRSLTEYQAS
QAIRLLSERSIAAVAKEFGVHPQTLRRLWAIHKRHTESAGEFNESSTSPCVKDE

Specific function: A DNA fragment of approximately 900 base pairs, adjacent to the fljB (H2) gene, which specifies the synthesis of phase-2 flagellin, can exist in either orientation with respect to fljB. The orientation of the inversion region controls expression of fljB.

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787404, Length=173, Percent_Identity=50.8670520231214, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1787827, Length=187, Percent_Identity=36.3636363636364, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1787638, Length=185, Percent_Identity=35.6756756756757, Blast_Score=94, Evalue=8e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 23739; Mature: 23739

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: PS00397 RECOMBINASES_1 ; PS00398 RECOMBINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQCSVKPEVTMRIGYARVSTEEQCLALQEDALTRAGCDLIFSDHGISGTNFCRPGLDQAL
CCCCCCCCEEEEECHHHHCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHH
QHLGRGDTLVVWRLDRLGRSLTKLVDMIDLLGQRDIHFESLTESINTQSPSGTLIFHIIA
HHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHH
ALAQFERALISERTRAGLAAAKNRGVRVGRPRSLTEYQASQAIRLLSERSIAAVAKEFGV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
HPQTLRRLWAIHKRHTESAGEFNESSTSPCVKDE
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQCSVKPEVTMRIGYARVSTEEQCLALQEDALTRAGCDLIFSDHGISGTNFCRPGLDQAL
CCCCCCCCEEEEECHHHHCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHH
QHLGRGDTLVVWRLDRLGRSLTKLVDMIDLLGQRDIHFESLTESINTQSPSGTLIFHIIA
HHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHH
ALAQFERALISERTRAGLAAAKNRGVRVGRPRSLTEYQASQAIRLLSERSIAAVAKEFGV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
HPQTLRRLWAIHKRHTESAGEFNESSTSPCVKDE
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8423149 [H]