| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237812310
Identifier: 237812310
GI number: 237812310
Start: 2026781
End: 2028958
Strand: Reverse
Name: 237812310
Synonym: GBP346_A2058
Alternate gene names: NA
Gene position: 2028958-2026781 (Counterclockwise)
Preceding gene: 237812311
Following gene: 237812309
Centisome position: 49.5
GC content: 59.18
Gene sequence:
>2178_bases ATGATAATCCCGGAGAAGGGCGATCCCGTCCGTGGCATTTTCTCACCAGTCGTGGACTGGCCCTTCATCCCGATCCATGC GATCCTGATGAAGGATGGCCGCATTCTGACCTATGGCAGCACCAAGCAAGGTTTCCAGTCTGGCATGTTTTTCTACGATG TCTGGTCTCCCTTCCTGGGCGGGAGTCCGAGTGCGCACCAGACATTGCCGAACACGACCCGGGTAGACTTATTTTGCAGC TCACAACTCAACCTGGCCGACGGCACGGTGGGCATCTTTGGCGGTGACGTCACAGTCGGGAGCAGTGACAGCACCGGCTA CTCTATCAATGCGTTCACCAATTCGTCCATCACCATATACAATCCGGAGGCGTCGGACGCGAGCCAGCAGTTGGCTAAGC AAGCCAACCAAATGCTGCTTCCTCGGTGGTACTCCACCGCGACGGTGCTGCCGAACAACGAAATCTATCTGCAGGGCGGG ACCGGTGGTAATACCTACCCCGAGATCCGAGGTGTCCCGGACGGTGTTCATCGCCTGTTGAACGGAGTCTATACCGGCGT TTACGACGACTGGTATCCGCGCAACTTCGTTGGCCCGAACGGCAAGATATTTGGCAAGACAGGTGCATCGCTCTTCGAGG TCGATACCAAGGGGAACGGTTCCGTCCGGACGTTGAACAGCACTGCGCCGTACAACCCGTTCGCCGCCGGTAGCCGGGGT GAGGCCGTCGTGATGTTCGCACCGGGCAAAATCCTGGTGGTTGGTACGGGCGGCGACGCCCGCACCGCCAGTGTGATCGA CATCAACAAGATGGAGACATCTGGCTCGGGCGCGTCATCGACACCCAGTGTCATCCCACTCGTAACAGCGACATCGAGAT TGAATCGCCCCAGAACCTGGGGGCATGCGACTGTCCTGCCGAACGGGCAGGTGTTCGTCAACGGCGGATCGATGGGATAC AACGAGTTGGCGACCAGCAGCTATACCGCCGAACTGTATGATCCGGCGACGAACACCTGGGCGGACGGCGCGGTTGCTGC GCATTCGCGTATGTATCACGCAATTTCACTGCTGCTGCCTGATGGGACAGTGCTGACGGGCGGTGGAGGCGCCAGCACCC CCACCTACCCGGGGCCCGAATTTCCGGTCAATGCGAATGCGGAAGTCTACTATCCGCCTTACCTGTTCAACGCGGACGGC ACGCGTGCGTCCCGCCCGGTGATCGATTCGGCGCCCGCGGCGATAACCGCCAACCGAATTTTCACGCTCACATCGCCCGA TGCTGGCTCGATCGGGCGCATGACCATGGTGAAGACCGGATCGACGACCCACTCGTTCAATATGGAGCAACGCTTCGTCG AACTGAACTTCACCCGGCAAGGAGCGCAGTTGTCCGCGACATTGACCAACGACCGGCACCAGTTTACACCCGGCATGTAC ATGCTTTTCGTGATCAACGTGAACGGCGTGCCGTCCGTCGCGAGTTTGGTACGCGTCGATCCGGATCCCGTGCTCGCCGC GACCGCGACGCGGACCCTTCGCATCATGCCCATGGGGGATGCCATCACCTATGGATACATCAATCTGCCGGGGACGAAAT ACTCAGGTTATCGTGCGCCACTGCAGGACCTGCTCGCACAAGCGAATCTCAACTACCAGTTCGTGGGTTCGATGTATGCG GGGAACGGTGTCTACGGAATCGACACTCACCACGAAGGCCATCCCGGCATGCTGATCGCCGACATGACGGCAAATGCCGC AAGCTGGGTGACGGCGGCTAAGCCCGATGTCGTCATGCTGCAAATGGGTTTTACCGACATGCTGAACAATTACCTGGTCG ATACCGCACCATCGAGGCTCAGAAAGCTGATCGATACGATCCGCGCAGCCGCGCCCGGAGCGAAGATCATTCTGTCGACG CTCGCACCCACCCCGGATGCGGCGACGCAGGCCCGCATCAACCAGTTCAATGCGCAGGTGGTCAGTCTCGCGAACGACGA AGCCGCGCAATTCAAGGATGTCTTCCTAGTCGACAGTTCGACGCTGATTCCGAAGGTCGGCGTGGATTACTACGACATGC TCTATCCCAACGACAACGGTCACACGAAGATCGCGAAAGTATGGCGAGATGGGATTGTGCGTGCGCTGGGATCGCCGTTT ACGTCCAAGTCGGCATGA
Upstream 100 bases:
>100_bases GGTGGCCGCGGGACTAACGACTGCGGGCATCGCGACTGCCTCGTTGTTCAAGATGGCAAAGGGCAGTACGGACGGTGGGA CCCTGTCGCAAAGCGTCGGC
Downstream 100 bases:
>100_bases GCGTGCGGCGATGGCTCCGTCCATTTCGCCAAGCGTCGTCGGCCCGGATCGGTCATAGGTTCAGCTTTGAATGAGGACAA CATGAAGAGCGTTACCCGTA
Product: hypothetical protein
Products: NA
Alternate protein names: Galactose Oxidase; Lipolytic Protein G-D-S-L Family; Ricin B Lectin; Kelch Domain Protein; Glycosyl Hydrolase; Xylanase; Exported Oxidase; FG-GAP Repeat Domain-Containing Protein; SGNH Hydrolase; Kelch Domain-Containing Protein; Endo-1 4-Beta-Xylanase; NHL Repeat Containing Protein; Arabinogalactan Endo-1 4-Beta-Galactosidase; Kelch Repeat-Containing Protein; Esterase; Endoglucanase; Lipolytic; BKRF1 Encodes EBNA-1 Protein Latent Cycle Gene; Kelch Domain Containing Protein; FG-GAP Repeat Domain Containing Protein; Secreted Beta-Mannosidase; FG-GAP Repeat Protein; Lectin Repeat-Containing Protein; Lipolytic G-D-S-L; FG-GAP Repeat Domain Protein
Number of amino acids: Translated: 725; Mature: 725
Protein sequence:
>725_residues MIIPEKGDPVRGIFSPVVDWPFIPIHAILMKDGRILTYGSTKQGFQSGMFFYDVWSPFLGGSPSAHQTLPNTTRVDLFCS SQLNLADGTVGIFGGDVTVGSSDSTGYSINAFTNSSITIYNPEASDASQQLAKQANQMLLPRWYSTATVLPNNEIYLQGG TGGNTYPEIRGVPDGVHRLLNGVYTGVYDDWYPRNFVGPNGKIFGKTGASLFEVDTKGNGSVRTLNSTAPYNPFAAGSRG EAVVMFAPGKILVVGTGGDARTASVIDINKMETSGSGASSTPSVIPLVTATSRLNRPRTWGHATVLPNGQVFVNGGSMGY NELATSSYTAELYDPATNTWADGAVAAHSRMYHAISLLLPDGTVLTGGGGASTPTYPGPEFPVNANAEVYYPPYLFNADG TRASRPVIDSAPAAITANRIFTLTSPDAGSIGRMTMVKTGSTTHSFNMEQRFVELNFTRQGAQLSATLTNDRHQFTPGMY MLFVINVNGVPSVASLVRVDPDPVLAATATRTLRIMPMGDAITYGYINLPGTKYSGYRAPLQDLLAQANLNYQFVGSMYA GNGVYGIDTHHEGHPGMLIADMTANAASWVTAAKPDVVMLQMGFTDMLNNYLVDTAPSRLRKLIDTIRAAAPGAKIILST LAPTPDAATQARINQFNAQVVSLANDEAAQFKDVFLVDSSTLIPKVGVDYYDMLYPNDNGHTKIAKVWRDGIVRALGSPF TSKSA
Sequences:
>Translated_725_residues MIIPEKGDPVRGIFSPVVDWPFIPIHAILMKDGRILTYGSTKQGFQSGMFFYDVWSPFLGGSPSAHQTLPNTTRVDLFCS SQLNLADGTVGIFGGDVTVGSSDSTGYSINAFTNSSITIYNPEASDASQQLAKQANQMLLPRWYSTATVLPNNEIYLQGG TGGNTYPEIRGVPDGVHRLLNGVYTGVYDDWYPRNFVGPNGKIFGKTGASLFEVDTKGNGSVRTLNSTAPYNPFAAGSRG EAVVMFAPGKILVVGTGGDARTASVIDINKMETSGSGASSTPSVIPLVTATSRLNRPRTWGHATVLPNGQVFVNGGSMGY NELATSSYTAELYDPATNTWADGAVAAHSRMYHAISLLLPDGTVLTGGGGASTPTYPGPEFPVNANAEVYYPPYLFNADG TRASRPVIDSAPAAITANRIFTLTSPDAGSIGRMTMVKTGSTTHSFNMEQRFVELNFTRQGAQLSATLTNDRHQFTPGMY MLFVINVNGVPSVASLVRVDPDPVLAATATRTLRIMPMGDAITYGYINLPGTKYSGYRAPLQDLLAQANLNYQFVGSMYA GNGVYGIDTHHEGHPGMLIADMTANAASWVTAAKPDVVMLQMGFTDMLNNYLVDTAPSRLRKLIDTIRAAAPGAKIILST LAPTPDAATQARINQFNAQVVSLANDEAAQFKDVFLVDSSTLIPKVGVDYYDMLYPNDNGHTKIAKVWRDGIVRALGSPF TSKSA >Mature_725_residues MIIPEKGDPVRGIFSPVVDWPFIPIHAILMKDGRILTYGSTKQGFQSGMFFYDVWSPFLGGSPSAHQTLPNTTRVDLFCS SQLNLADGTVGIFGGDVTVGSSDSTGYSINAFTNSSITIYNPEASDASQQLAKQANQMLLPRWYSTATVLPNNEIYLQGG TGGNTYPEIRGVPDGVHRLLNGVYTGVYDDWYPRNFVGPNGKIFGKTGASLFEVDTKGNGSVRTLNSTAPYNPFAAGSRG EAVVMFAPGKILVVGTGGDARTASVIDINKMETSGSGASSTPSVIPLVTATSRLNRPRTWGHATVLPNGQVFVNGGSMGY NELATSSYTAELYDPATNTWADGAVAAHSRMYHAISLLLPDGTVLTGGGGASTPTYPGPEFPVNANAEVYYPPYLFNADG TRASRPVIDSAPAAITANRIFTLTSPDAGSIGRMTMVKTGSTTHSFNMEQRFVELNFTRQGAQLSATLTNDRHQFTPGMY MLFVINVNGVPSVASLVRVDPDPVLAATATRTLRIMPMGDAITYGYINLPGTKYSGYRAPLQDLLAQANLNYQFVGSMYA GNGVYGIDTHHEGHPGMLIADMTANAASWVTAAKPDVVMLQMGFTDMLNNYLVDTAPSRLRKLIDTIRAAAPGAKIILST LAPTPDAATQARINQFNAQVVSLANDEAAQFKDVFLVDSSTLIPKVGVDYYDMLYPNDNGHTKIAKVWRDGIVRALGSPF TSKSA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 77465; Mature: 77465
Theoretical pI: Translated: 6.66; Mature: 6.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIIPEKGDPVRGIFSPVVDWPFIPIHAILMKDGRILTYGSTKQGFQSGMFFYDVWSPFLG CCCCCCCCCCHHHHHHHHCCCCHHEEEEEECCCEEEEECCCHHHHHCCCEEEEHHHHHHC GSPSAHQTLPNTTRVDLFCSSQLNLADGTVGIFGGDVTVGSSDSTGYSINAFTNSSITIY CCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECEEEECCCCCCCEEEEEEECCEEEEE NPEASDASQQLAKQANQMLLPRWYSTATVLPNNEIYLQGGTGGNTYPEIRGVPDGVHRLL CCCCCCHHHHHHHHHHHEECCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHH NGVYTGVYDDWYPRNFVGPNGKIFGKTGASLFEVDTKGNGSVRTLNSTAPYNPFAAGSRG HHHCCCCCCCCCCCCEECCCCEEEECCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCC EAVVMFAPGKILVVGTGGDARTASVIDINKMETSGSGASSTPSVIPLVTATSRLNRPRTW CEEEEECCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEEEEHHHCCCCCCC GHATVLPNGQVFVNGGSMGYNELATSSYTAELYDPATNTWADGAVAAHSRMYHAISLLLP CEEEECCCCEEEEECCCCCHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHEEEEEEEEC DGTVLTGGGGASTPTYPGPEFPVNANAEVYYPPYLFNADGTRASRPVIDSAPAAITANRI CCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCEEEECEE FTLTSPDAGSIGRMTMVKTGSTTHSFNMEQRFVELNFTRQGAQLSATLTNDRHQFTPGMY EEEECCCCCCCCCEEEEECCCCCEECCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCEE MLFVINVNGVPSVASLVRVDPDPVLAATATRTLRIMPMGDAITYGYINLPGTKYSGYRAP EEEEEECCCCCCHHHHEEECCCCEEEEECCEEEEEEECCCEEEEEEEECCCCCCCCCCCC LQDLLAQANLNYQFVGSMYAGNGVYGIDTHHEGHPGMLIADMTANAASWVTAAKPDVVML HHHHHHHCCCCEEEEEEEECCCCEEEECCCCCCCCCEEEEECCCCCHHEEEECCCCEEEE QMGFTDMLNNYLVDTAPSRLRKLIDTIRAAAPGAKIILSTLAPTPDAATQARINQFNAQV ECCCHHHHHHHEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCEEE VSLANDEAAQFKDVFLVDSSTLIPKVGVDYYDMLYPNDNGHTKIAKVWRDGIVRALGSPF EEECCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC TSKSA CCCCC >Mature Secondary Structure MIIPEKGDPVRGIFSPVVDWPFIPIHAILMKDGRILTYGSTKQGFQSGMFFYDVWSPFLG CCCCCCCCCCHHHHHHHHCCCCHHEEEEEECCCEEEEECCCHHHHHCCCEEEEHHHHHHC GSPSAHQTLPNTTRVDLFCSSQLNLADGTVGIFGGDVTVGSSDSTGYSINAFTNSSITIY CCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECEEEECCCCCCCEEEEEEECCEEEEE NPEASDASQQLAKQANQMLLPRWYSTATVLPNNEIYLQGGTGGNTYPEIRGVPDGVHRLL CCCCCCHHHHHHHHHHHEECCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCHHHHHHH NGVYTGVYDDWYPRNFVGPNGKIFGKTGASLFEVDTKGNGSVRTLNSTAPYNPFAAGSRG HHHCCCCCCCCCCCCEECCCCEEEECCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCC EAVVMFAPGKILVVGTGGDARTASVIDINKMETSGSGASSTPSVIPLVTATSRLNRPRTW CEEEEECCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEEEEHHHCCCCCCC GHATVLPNGQVFVNGGSMGYNELATSSYTAELYDPATNTWADGAVAAHSRMYHAISLLLP CEEEECCCCEEEEECCCCCHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHEEEEEEEEC DGTVLTGGGGASTPTYPGPEFPVNANAEVYYPPYLFNADGTRASRPVIDSAPAAITANRI CCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCEEEECEE FTLTSPDAGSIGRMTMVKTGSTTHSFNMEQRFVELNFTRQGAQLSATLTNDRHQFTPGMY EEEECCCCCCCCCEEEEECCCCCEECCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCEE MLFVINVNGVPSVASLVRVDPDPVLAATATRTLRIMPMGDAITYGYINLPGTKYSGYRAP EEEEEECCCCCCHHHHEEECCCCEEEEECCEEEEEEECCCEEEEEEEECCCCCCCCCCCC LQDLLAQANLNYQFVGSMYAGNGVYGIDTHHEGHPGMLIADMTANAASWVTAAKPDVVML HHHHHHHCCCCEEEEEEEECCCCEEEECCCCCCCCCEEEEECCCCCHHEEEECCCCEEEE QMGFTDMLNNYLVDTAPSRLRKLIDTIRAAAPGAKIILSTLAPTPDAATQARINQFNAQV ECCCHHHHHHHEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCEEE VSLANDEAAQFKDVFLVDSSTLIPKVGVDYYDMLYPNDNGHTKIAKVWRDGIVRALGSPF EEECCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCC TSKSA CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA