| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
Click here to switch to the map view.
The map label for this gene is fct [H]
Identifier: 237812223
GI number: 237812223
Start: 1921585
End: 1923798
Strand: Direct
Name: fct [H]
Synonym: GBP346_A1969
Alternate gene names: 237812223
Gene position: 1921585-1923798 (Clockwise)
Preceding gene: 237812222
Following gene: 237812224
Centisome position: 46.88
GC content: 67.98
Gene sequence:
>2214_bases ATGGAGTGGGCAACCAGCACGCGCGTGCGTGCGATCGCGGCCGGCGTGGCGTTCTACGCGGCGGCGGCGGGTCATGCGCA GGCACAGGCGGCGCAGCCGGGGGCGGACGCGCGGCAGCCGGGCGGCGAGGCGAAGGCAGACACCGCGGCGGGCGGCACGT TGCCCGCGATCTCGGTGTCGGGAGCAGCGGAGCGCGACGCGAGCGTCGGCCTCGTCGCGCGGCGCAGCATGACGGGCACG AAAACGGATACGCCGATCATCGAGATTCCACAGACGATCAACGTCGTCACCGCGCAGCAGATCGAGGCGACGGGCGCGAC CGACATCAATCAGGCGTTCCGCTACATTCCGGGCTTCTCGAGCTACGGGTCGGACAACCGTTCGGACTGGTACGCGGCGC TGCGCGGCTTCACGCCGACCGTGTTCGTCGACGGGCTGCAGGTGCCGAACACGATCAACCTGTCGAGCTGGCGCGTCGAT CCGTACATGATCGACAGCATCGCCGTGCTGCGCGGCCCGACGTCGGTGCTGTACGGGCAGGGCGATCCCGGCGCGATCGT CGACGTGCAGAGCAAGCTCGCGAACGGCGAGCGCATCCGCGAGCTCGGCGTGCAGGTCGGCAACTACGCGCGCAAGCAAC TGATGTTCGACATCGGCGACACGATCGGCAAGGACGGCACGCTGTCGTACCGGATCGTCGGCGTCGGCCGCGACGGCAAC GCGCAGACGGGGCCGCTCGCCGACCAGCGCGTGTCGTTCGCGCCGTCGCTCAAATGGCAGCCGAACGCGGACACGTCGCT CACCCTCGCCGCGACGTACCTGCAGGACTGGGGCGACACGTCGAGCAACTTCCTGCCGTCGCGCGGCACCGTGCTGCCGA ATCCGAACGGCACGATCTCGGACGATCTGTACACGGCCGATGCGAACTTCGACCATTACCGCAAGAAGCAGTGGTCGCTC GGCTATCAGTTCGAGCACAAGCTGAACCCGGTGTGGACGCTGCGGCAGAACGTGCGCTGGATGCACCTGTCGCTCGACGA CGCGTCCGTCTACGGCGGCGGCCTCGACGACGCAGACCCGACGATGGCGACGATGAAGCGCTACGCGGGCCTGTTCCAGT TCAACTACAGCCGCTTCGACGTCGACAACCAGGCGCAGGCGAAATTCACGACGGGCCCGCTTTCGCACACGCTGCTGTTC GGCTTCGACTACAACCGCCAGACGACGACCGATAGCGAATGGCTCGCGAAGGGGCCGAGCCTGAACCTGTACCGGCCCGT CTACACGCCGATTCCGTCCGACATCTTCAGCGGGCCGAACGCGTACCCGCGCACCGACACGAAGACGACGCTGAACGCAT TCGGCCTGTACGTGCAGGACCAGATCAAGTGGCGGCGCTGGGTGCTCACGCTCGGCGGCCGGCAGGACTGGACGCGCACG TCGCAGGACGACATCGCGAACGCGGCGAGCTTCAGGCAGAACGACCACGCGTTCAGCGGGCGCGTGGGCCTCACGTATCT CGGCGACTACGGGCTCGCGCCGTACCTCAGCTATTCGACGTCGTTCAATCCGCAGATCGGCCTGAAGCTCGCGGGCGGCG GGCTCGCGACGCCGACCAAGGGCCGCCAGATCGAGGCGGGCCTGCGCTGGCAGCCGCCCGGCAAGAACCTGATGCTGAAC GCGGCCGTCTACCAGATCAACCAGACGAACGTCGCGATGAGCAATCCGAACGACCCGACGAGCAGCACGTTCGTGCAGGT GGGCGAGGTGCGCTCGCGCGGCGTCGAGCTGAGCGCGGTGGGCAACCTGTCGCGCGAGCTGTCGGTGATCGCCGCGTACG TCTATCAGGACGTGAAGAACGTGCGGGCGAACGACAACACGCTGAACAAGTGGCCCGTCGACGTGCCGCGGCCGCGCCAG ATCGCGTCGCTGTGGGCCGACTGGACGTGGCGCACCGGGCCGCTCACGGGCTTCGGCGTCGGCGCGGGCGTGCGCTACAT GAGCGCGGCGGCGGGCGCGGCCGACAATTCGCTCACGGTGCCGAGCTACACGCTGTTCGACGCGGCGCTGCACTACGAGC TGCGCAACTGGCGTTTCGCGCTCAACGCGACGAACCTGTTCAACCGCCGCTACGTGGCCGGCTGCCAGTCGGATGCGGTG TGCATGTACGGCAACCAGCGCACCGTGATCGCGACCGCGAAATACAACTGGTAA
Upstream 100 bases:
>100_bases CGCGACACGAAAACAACGGGGTGAGCGACGGCCGGCTGGCCATCGCTCTTTGATGAAGGTGCGGCCCTCGCGGCCGCTTT GCAACTTGGAGCAACGGAAG
Downstream 100 bases:
>100_bases GCGCGTTTCATCACCCGATGGGCGGCGCGGCGGCGCGCCGCCCGAACGAGAGGACAACACTGCGATGGCAAAGAAGAAAC TCGTCTACATCTGGTCGCTC
Product: ornibactin receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 737; Mature: 737
Protein sequence:
>737_residues MEWATSTRVRAIAAGVAFYAAAAGHAQAQAAQPGADARQPGGEAKADTAAGGTLPAISVSGAAERDASVGLVARRSMTGT KTDTPIIEIPQTINVVTAQQIEATGATDINQAFRYIPGFSSYGSDNRSDWYAALRGFTPTVFVDGLQVPNTINLSSWRVD PYMIDSIAVLRGPTSVLYGQGDPGAIVDVQSKLANGERIRELGVQVGNYARKQLMFDIGDTIGKDGTLSYRIVGVGRDGN AQTGPLADQRVSFAPSLKWQPNADTSLTLAATYLQDWGDTSSNFLPSRGTVLPNPNGTISDDLYTADANFDHYRKKQWSL GYQFEHKLNPVWTLRQNVRWMHLSLDDASVYGGGLDDADPTMATMKRYAGLFQFNYSRFDVDNQAQAKFTTGPLSHTLLF GFDYNRQTTTDSEWLAKGPSLNLYRPVYTPIPSDIFSGPNAYPRTDTKTTLNAFGLYVQDQIKWRRWVLTLGGRQDWTRT SQDDIANAASFRQNDHAFSGRVGLTYLGDYGLAPYLSYSTSFNPQIGLKLAGGGLATPTKGRQIEAGLRWQPPGKNLMLN AAVYQINQTNVAMSNPNDPTSSTFVQVGEVRSRGVELSAVGNLSRELSVIAAYVYQDVKNVRANDNTLNKWPVDVPRPRQ IASLWADWTWRTGPLTGFGVGAGVRYMSAAAGAADNSLTVPSYTLFDAALHYELRNWRFALNATNLFNRRYVAGCQSDAV CMYGNQRTVIATAKYNW
Sequences:
>Translated_737_residues MEWATSTRVRAIAAGVAFYAAAAGHAQAQAAQPGADARQPGGEAKADTAAGGTLPAISVSGAAERDASVGLVARRSMTGT KTDTPIIEIPQTINVVTAQQIEATGATDINQAFRYIPGFSSYGSDNRSDWYAALRGFTPTVFVDGLQVPNTINLSSWRVD PYMIDSIAVLRGPTSVLYGQGDPGAIVDVQSKLANGERIRELGVQVGNYARKQLMFDIGDTIGKDGTLSYRIVGVGRDGN AQTGPLADQRVSFAPSLKWQPNADTSLTLAATYLQDWGDTSSNFLPSRGTVLPNPNGTISDDLYTADANFDHYRKKQWSL GYQFEHKLNPVWTLRQNVRWMHLSLDDASVYGGGLDDADPTMATMKRYAGLFQFNYSRFDVDNQAQAKFTTGPLSHTLLF GFDYNRQTTTDSEWLAKGPSLNLYRPVYTPIPSDIFSGPNAYPRTDTKTTLNAFGLYVQDQIKWRRWVLTLGGRQDWTRT SQDDIANAASFRQNDHAFSGRVGLTYLGDYGLAPYLSYSTSFNPQIGLKLAGGGLATPTKGRQIEAGLRWQPPGKNLMLN AAVYQINQTNVAMSNPNDPTSSTFVQVGEVRSRGVELSAVGNLSRELSVIAAYVYQDVKNVRANDNTLNKWPVDVPRPRQ IASLWADWTWRTGPLTGFGVGAGVRYMSAAAGAADNSLTVPSYTLFDAALHYELRNWRFALNATNLFNRRYVAGCQSDAV CMYGNQRTVIATAKYNW >Mature_737_residues MEWATSTRVRAIAAGVAFYAAAAGHAQAQAAQPGADARQPGGEAKADTAAGGTLPAISVSGAAERDASVGLVARRSMTGT KTDTPIIEIPQTINVVTAQQIEATGATDINQAFRYIPGFSSYGSDNRSDWYAALRGFTPTVFVDGLQVPNTINLSSWRVD PYMIDSIAVLRGPTSVLYGQGDPGAIVDVQSKLANGERIRELGVQVGNYARKQLMFDIGDTIGKDGTLSYRIVGVGRDGN AQTGPLADQRVSFAPSLKWQPNADTSLTLAATYLQDWGDTSSNFLPSRGTVLPNPNGTISDDLYTADANFDHYRKKQWSL GYQFEHKLNPVWTLRQNVRWMHLSLDDASVYGGGLDDADPTMATMKRYAGLFQFNYSRFDVDNQAQAKFTTGPLSHTLLF GFDYNRQTTTDSEWLAKGPSLNLYRPVYTPIPSDIFSGPNAYPRTDTKTTLNAFGLYVQDQIKWRRWVLTLGGRQDWTRT SQDDIANAASFRQNDHAFSGRVGLTYLGDYGLAPYLSYSTSFNPQIGLKLAGGGLATPTKGRQIEAGLRWQPPGKNLMLN AAVYQINQTNVAMSNPNDPTSSTFVQVGEVRSRGVELSAVGNLSRELSVIAAYVYQDVKNVRANDNTLNKWPVDVPRPRQ IASLWADWTWRTGPLTGFGVGAGVRYMSAAAGAADNSLTVPSYTLFDAALHYELRNWRFALNATNLFNRRYVAGCQSDAV CMYGNQRTVIATAKYNW
Specific function: Involved in the initial step of iron uptake by binding chrysobactin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=702, Percent_Identity=35.3276353276353, Blast_Score=382, Evalue=1e-107, Organism=Escherichia coli, GI1787024, Length=722, Percent_Identity=23.5457063711911, Blast_Score=138, Evalue=1e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 80525; Mature: 80525
Theoretical pI: Translated: 8.85; Mature: 8.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEWATSTRVRAIAAGVAFYAAAAGHAQAQAAQPGADARQPGGEAKADTAAGGTLPAISVS CCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC GAAERDASVGLVARRSMTGTKTDTPIIEIPQTINVVTAQQIEATGATDINQAFRYIPGFS CCCCCCCCEEEEEECCCCCCCCCCCEEECCCEEEEEEHHHCCCCCCCCHHHHHHHCCCCC SYGSDNRSDWYAALRGFTPTVFVDGLQVPNTINLSSWRVDPYMIDSIAVLRGPTSVLYGQ CCCCCCCHHHHHHHHCCCCEEEEECCCCCCEECCCCEECCCEEECEEEEECCCCEEEEEC GDPGAIVDVQSKLANGERIRELGVQVGNYARKQLMFDIGDTIGKDGTLSYRIVGVGRDGN CCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC AQTGPLADQRVSFAPSLKWQPNADTSLTLAATYLQDWGDTSSNFLPSRGTVLPNPNGTIS CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCC DDLYTADANFDHYRKKQWSLGYQFEHKLNPVWTLRQNVRWMHLSLDDASVYGGGLDDADP CCEEEECCCCHHHHHHHCCCCEEEECCCCCEEEECCCCEEEEEEECCCEEECCCCCCCCH TMATMKRYAGLFQFNYSRFDVDNQAQAKFTTGPLSHTLLFGFDYNRQTTTDSEWLAKGPS HHHHHHHHHHHEEECCEEECCCCCCCEEEECCCCCEEEEEEEECCCCCCCCHHHHHCCCC LNLYRPVYTPIPSDIFSGPNAYPRTDTKTTLNAFGLYVQDQIKWRRWVLTLGGRQDWTRT CCEECCCCCCCCHHHHCCCCCCCCCCCCHHHHHHEEEEEHHCCEEEEEEEECCCCCCCCC SQDDIANAASFRQNDHAFSGRVGLTYLGDYGLAPYLSYSTSFNPQIGLKLAGGGLATPTK CHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCCEEEEECCCCCCCCCC GRQIEAGLRWQPPGKNLMLNAAVYQINQTNVAMSNPNDPTSSTFVQVGEVRSRGVELSAV CCEEECCCEECCCCCCEEEEEEEEEEECCEEEECCCCCCCCHHHEEECHHHHCCEEEEEC GNLSRELSVIAAYVYQDVKNVRANDNTLNKWPVDVPRPRQIASLWADWTWRTGPLTGFGV CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEECCCCCCCCC GAGVRYMSAAAGAADNSLTVPSYTLFDAALHYELRNWRFALNATNLFNRRYVAGCQSDAV CCCHHHHHHHCCCCCCCEECCCHHHHHHHHHEEECCEEEEEECHHHHCCCEECCCCCCCE CMYGNQRTVIATAKYNW EEECCCEEEEEEEECCC >Mature Secondary Structure MEWATSTRVRAIAAGVAFYAAAAGHAQAQAAQPGADARQPGGEAKADTAAGGTLPAISVS CCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC GAAERDASVGLVARRSMTGTKTDTPIIEIPQTINVVTAQQIEATGATDINQAFRYIPGFS CCCCCCCCEEEEEECCCCCCCCCCCEEECCCEEEEEEHHHCCCCCCCCHHHHHHHCCCCC SYGSDNRSDWYAALRGFTPTVFVDGLQVPNTINLSSWRVDPYMIDSIAVLRGPTSVLYGQ CCCCCCCHHHHHHHHCCCCEEEEECCCCCCEECCCCEECCCEEECEEEEECCCCEEEEEC GDPGAIVDVQSKLANGERIRELGVQVGNYARKQLMFDIGDTIGKDGTLSYRIVGVGRDGN CCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC AQTGPLADQRVSFAPSLKWQPNADTSLTLAATYLQDWGDTSSNFLPSRGTVLPNPNGTIS CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCC DDLYTADANFDHYRKKQWSLGYQFEHKLNPVWTLRQNVRWMHLSLDDASVYGGGLDDADP CCEEEECCCCHHHHHHHCCCCEEEECCCCCEEEECCCCEEEEEEECCCEEECCCCCCCCH TMATMKRYAGLFQFNYSRFDVDNQAQAKFTTGPLSHTLLFGFDYNRQTTTDSEWLAKGPS HHHHHHHHHHHEEECCEEECCCCCCCEEEECCCCCEEEEEEEECCCCCCCCHHHHHCCCC LNLYRPVYTPIPSDIFSGPNAYPRTDTKTTLNAFGLYVQDQIKWRRWVLTLGGRQDWTRT CCEECCCCCCCCHHHHCCCCCCCCCCCCHHHHHHEEEEEHHCCEEEEEEEECCCCCCCCC SQDDIANAASFRQNDHAFSGRVGLTYLGDYGLAPYLSYSTSFNPQIGLKLAGGGLATPTK CHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCCEEEEECCCCCCCCCC GRQIEAGLRWQPPGKNLMLNAAVYQINQTNVAMSNPNDPTSSTFVQVGEVRSRGVELSAV CCEEECCCEECCCCCCEEEEEEEEEEECCEEEECCCCCCCCHHHEEECHHHHCCEEEEEC GNLSRELSVIAAYVYQDVKNVRANDNTLNKWPVDVPRPRQIASLWADWTWRTGPLTGFGV CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEECCCCCCCCC GAGVRYMSAAAGAADNSLTVPSYTLFDAALHYELRNWRFALNATNLFNRRYVAGCQSDAV CCCHHHHHHHCCCCCCCEECCCHHHHHHHHHEEECCEEEEEECHHHHCCCEECCCCCCCE CMYGNQRTVIATAKYNW EEECCCEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8576065 [H]