Click here to switch to the map view.

The map label for this gene is fecI [C]

Identifier: 237812210

GI number: 237812210

Start: 1894087

End: 1894800

Strand: Direct

Name: fecI [C]

Synonym: GBP346_A1956

Alternate gene names: 237812210

Gene position: 1894087-1894800 (Clockwise)

Preceding gene: 237812209

Following gene: 237812211

Centisome position: 46.21

GC content: 72.13

Gene sequence:

>714_bases
ATGGCGGAAGTGCTCGCTCGGCCGGCGCCGGCAAAACCGTTACCGATCCTCGCTTCGAACGGGGCGTTTGCGCCCGCCGC
GGCGCCCGTCTTGCGCGCGCCGTCGCGGCCTGCGGCGCGCACGCCGGGCGCGCGCGAGCACGGCGCGCTCGTCGATGTGC
TGGTCGCGAACCGGCCGATGCTCGTCAAGCTCGCGCGCGGCTTCGTCGGCTGCGCGAGCCGCGCGGAGGACGTGGTGCAC
GACGTGTTCGTGAAGCTCGTCGATTTTCCGAACCAGGACGCGATCCGGCAGCCCGTCGCGTACGTGACGCGGATGGTTCG
CAACGCGTCGATCGACGCGTGCCGCCGCCAGACGCTCGAGAACACCTACCACGCGGACGAGGATGACGGCCTCGACGTGC
CGTCGCCCGAGCTGTCGCCGGAGGCCGCGCTCGTCGTGCGCGACACGCTGCGCCACGTGTACGACGCGCTCGCGCAACTG
CCCGCGCGCAGCCGCGCCGCGTTCGAGATGGTGCGGCTGCGCGAGGAGACGCTGCAGAGCGCCGCGCGCGCGCTGAACGT
GTCGCAGACGCTCGTGCACTTCATGGTCCGCGACGCCGAGCGGCACTGCGTCGCGTGCGTCGACGCGTCCGAGCGCGGGC
TCGCGTGCCCGGCGTTTTGCGGCGCCCGCGCGCGGACGGTAAAAAAATGCGTGCGCGATTCGTCTATCGAGTAG

Upstream 100 bases:

>100_bases
GACAAATCCCGCGAGATTATCGGGTTATCAATAAATCATATTGAGAACGATTCGCGTTTACGTTAGATTGCTTGCCATTG
AGCAAACATCTGGAGAATCC

Downstream 100 bases:

>100_bases
ACGCGGCGCACGCGGTGCGCCGTCCTTCGAACCTTTCCAGCGAGCTTTCCCGATCATGACGCAAGCCCAGCAACCCGCGA
GCGCGCCCGCCGACGCCGAC

Product: extracytoplasmic-function sigma-70 factor

Products: NA

Alternate protein names: Extracytoplasmic-Function Sigma-70 Factor; Extracytoplasmic-Function Sigma-70 Factor PvdS; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; Sigma-; RNA Polymerase Sigma Factor; Sigma Factor; RNA Polymerase Sigma Factor FECI Protein; RNA Polymerase Sigma-70 Family Protein; Ferric Regulator Sigma-24 Subunit; DNA-Directed RNA Polymerase Sigma-E/Sigma-24/FecI; RNA Polymerase Sigma Factor Protein; ECF Subfamily RNA Polymerase Sigma-70 Factor; ECF Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MAEVLARPAPAKPLPILASNGAFAPAAAPVLRAPSRPAARTPGAREHGALVDVLVANRPMLVKLARGFVGCASRAEDVVH
DVFVKLVDFPNQDAIRQPVAYVTRMVRNASIDACRRQTLENTYHADEDDGLDVPSPELSPEAALVVRDTLRHVYDALAQL
PARSRAAFEMVRLREETLQSAARALNVSQTLVHFMVRDAERHCVACVDASERGLACPAFCGARARTVKKCVRDSSIE

Sequences:

>Translated_237_residues
MAEVLARPAPAKPLPILASNGAFAPAAAPVLRAPSRPAARTPGAREHGALVDVLVANRPMLVKLARGFVGCASRAEDVVH
DVFVKLVDFPNQDAIRQPVAYVTRMVRNASIDACRRQTLENTYHADEDDGLDVPSPELSPEAALVVRDTLRHVYDALAQL
PARSRAAFEMVRLREETLQSAARALNVSQTLVHFMVRDAERHCVACVDASERGLACPAFCGARARTVKKCVRDSSIE
>Mature_236_residues
AEVLARPAPAKPLPILASNGAFAPAAAPVLRAPSRPAARTPGAREHGALVDVLVANRPMLVKLARGFVGCASRAEDVVHD
VFVKLVDFPNQDAIRQPVAYVTRMVRNASIDACRRQTLENTYHADEDDGLDVPSPELSPEAALVVRDTLRHVYDALAQLP
ARSRAAFEMVRLREETLQSAARALNVSQTLVHFMVRDAERHCVACVDASERGLACPAFCGARARTVKKCVRDSSIE

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25680; Mature: 25549

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEVLARPAPAKPLPILASNGAFAPAAAPVLRAPSRPAARTPGAREHGALVDVLVANRPM
CCCCCCCCCCCCCCCEEECCCCCCCHHHHHHCCCCCCCCCCCCCCHHCHHHHHHHCCCCH
LVKLARGFVGCASRAEDVVHDVFVKLVDFPNQDAIRQPVAYVTRMVRNASIDACRRQTLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
NTYHADEDDGLDVPSPELSPEAALVVRDTLRHVYDALAQLPARSRAAFEMVRLREETLQS
HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
AARALNVSQTLVHFMVRDAERHCVACVDASERGLACPAFCGARARTVKKCVRDSSIE
HHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AEVLARPAPAKPLPILASNGAFAPAAAPVLRAPSRPAARTPGAREHGALVDVLVANRPM
CCCCCCCCCCCCCCEEECCCCCCCHHHHHHCCCCCCCCCCCCCCHHCHHHHHHHCCCCH
LVKLARGFVGCASRAEDVVHDVFVKLVDFPNQDAIRQPVAYVTRMVRNASIDACRRQTLE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
NTYHADEDDGLDVPSPELSPEAALVVRDTLRHVYDALAQLPARSRAAFEMVRLREETLQS
HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
AARALNVSQTLVHFMVRDAERHCVACVDASERGLACPAFCGARARTVKKCVRDSSIE
HHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA