| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237812167
Identifier: 237812167
GI number: 237812167
Start: 1853874
End: 1855109
Strand: Direct
Name: 237812167
Synonym: GBP346_A1913
Alternate gene names: NA
Gene position: 1853874-1855109 (Clockwise)
Preceding gene: 237812166
Following gene: 237812168
Centisome position: 45.23
GC content: 74.43
Gene sequence:
>1236_bases ATGGGCGCATTCGACCGGGTGGGCGGCGCGCGGCCCGTGAAGGAACTGCGCGACGCGGCGGGCGGCGCGCGCCTCGTCGC GATCGTCGCCGACGCGGCGAGCGACGAGGTGATCCGCAACCTGATCGCCGATCAGGCGATGACGGGCGCGCAGGTCGCGC GCGGCGGAATCGACGATGCGATCGCGCTGATGCGCGATCTTTCGCACGGGCCGCAGCATCTGCTCGTCGACGTGTCGGGC GCGGCGATGCCGTTGTCCGATCTCGCGCGGCTCGCCGACGTCTGCGATCCATCGGTGAACGTGATCGTGATCGGCGAGCG CAACGATGTCGGGCTGTTTCGCAGCATGCTGCGCATCGGCGTGCGCGATTATCTCGTCAAGCCGCTGACCGTCGAGCTCG TGCATCGCGCGCTGTCGGCGGCCGATCCGAACGCCGCCGCGCGCGCGGGCAAGGCGATCGGCTTCGTCGGCGCGCGCGGC GGCGTCGGCGTGACGAGCATCGCGGTCGCGCTCGCGCGCCATCTCGCGGACCGCACGCGCCGCCGCGTCGCGTACGTCGA TTTCGACTGCCACGGCGGCGCGGCGTGCTCGATGCTCGGCGTCGTCAGCAACCAGGGGCTCGTCGAGCTGCTGCAGAATC CGCAGCGGCTCGACGCGCAACTGATCCATCAGGCGATGGTCGCGCAGAGCGACCGGCTCTTCGTGCTGTCGGCCGAGCTG CCTTACGACAGCGAGGCGCCGTGGCGCGCGGGCGCGGTCGCGGGGCTCGTCGGCGCGCTCAGGCATCAGTTCCATTACGT GCTGCTCGATCTGCCCGAGCGCGCGGGCCGGCTCGTCGACGAGGCGCTCGCCGCGTGCGCGAGCGTGTACGTGGTCGCCG ACCGCTCGGTGCACGCGGCGCGCGAGGCGGCGCGGCTGCTGCATCACGCGCAGGCGCGCGACGGCGACGCGCACGTCTCG CTGATCCTCAACAACGCGCAGCAGCCGGTGCGCGGGCGCGTCGAGCCGGCCGATTTCGCGCGGGCGGTGGGGCGCGCGTC GATGCTCGAGCTGCCGTACGAGCCGCAAACGCTCGCCGTCGCCGAGAACCTCGGCGCGGCGCTCGACGCGCCGCGCGGCG ACGGCTTCGCGGCCGGCATCGGCGCGCTCGCGCAGGGGCTCACGGGCGCCGACGCGGCGCCCGCCGCGCGCCGGCCGTGG TACGCGCGGCTCGCCGGCGGGCGGGGGGCGCGGTGA
Upstream 100 bases:
>100_bases GCGCTCGGCGCGAGCGCGGTGCGCCGCTACGACGAAGGCCGCGCGACGCCGCTGAACCCGACGTCGACGACGACGTCCGT CACGCACTAGCGGAGGCGAA
Downstream 100 bases:
>100_bases TGTTCGGCCGGCGTCCGGCCGCTTCATTCGCGCCCGGCGACGCCGGCGGCGCGCACGAGTTCGCGCCCGACGCCGCGCCG GCGGGCGCGGGCGCGGCGCC
Product: putative CpaE protein
Products: NA
Alternate protein names: Pilus Assembly Protein CpaE; Pilus Assembly Protein; Pilus Assembly ATPase CpaE; Flp Pilus Assembly Protein ATPase CpaE; Response Regulator Receiver Domain-Containing Protein; Flp Pilus Assembly Protein ATPase CpaE-Like Protein; Two-Component Response Regulator; CtpF Protein; Response Regulator Receiver; Fimbriae Assembly-Related Protein; CpaE2 Pilus Assembly Protein; TadE-Like; Component Of Type IV Pilus; Flp Pilus Assembly Protein CpaE-Like; Flp Pilus Assembly Protein ATPase; Components Of Type IV Pilus
Number of amino acids: Translated: 411; Mature: 410
Protein sequence:
>411_residues MGAFDRVGGARPVKELRDAAGGARLVAIVADAASDEVIRNLIADQAMTGAQVARGGIDDAIALMRDLSHGPQHLLVDVSG AAMPLSDLARLADVCDPSVNVIVIGERNDVGLFRSMLRIGVRDYLVKPLTVELVHRALSAADPNAAARAGKAIGFVGARG GVGVTSIAVALARHLADRTRRRVAYVDFDCHGGAACSMLGVVSNQGLVELLQNPQRLDAQLIHQAMVAQSDRLFVLSAEL PYDSEAPWRAGAVAGLVGALRHQFHYVLLDLPERAGRLVDEALAACASVYVVADRSVHAAREAARLLHHAQARDGDAHVS LILNNAQQPVRGRVEPADFARAVGRASMLELPYEPQTLAVAENLGAALDAPRGDGFAAGIGALAQGLTGADAAPAARRPW YARLAGGRGAR
Sequences:
>Translated_411_residues MGAFDRVGGARPVKELRDAAGGARLVAIVADAASDEVIRNLIADQAMTGAQVARGGIDDAIALMRDLSHGPQHLLVDVSG AAMPLSDLARLADVCDPSVNVIVIGERNDVGLFRSMLRIGVRDYLVKPLTVELVHRALSAADPNAAARAGKAIGFVGARG GVGVTSIAVALARHLADRTRRRVAYVDFDCHGGAACSMLGVVSNQGLVELLQNPQRLDAQLIHQAMVAQSDRLFVLSAEL PYDSEAPWRAGAVAGLVGALRHQFHYVLLDLPERAGRLVDEALAACASVYVVADRSVHAAREAARLLHHAQARDGDAHVS LILNNAQQPVRGRVEPADFARAVGRASMLELPYEPQTLAVAENLGAALDAPRGDGFAAGIGALAQGLTGADAAPAARRPW YARLAGGRGAR >Mature_410_residues GAFDRVGGARPVKELRDAAGGARLVAIVADAASDEVIRNLIADQAMTGAQVARGGIDDAIALMRDLSHGPQHLLVDVSGA AMPLSDLARLADVCDPSVNVIVIGERNDVGLFRSMLRIGVRDYLVKPLTVELVHRALSAADPNAAARAGKAIGFVGARGG VGVTSIAVALARHLADRTRRRVAYVDFDCHGGAACSMLGVVSNQGLVELLQNPQRLDAQLIHQAMVAQSDRLFVLSAELP YDSEAPWRAGAVAGLVGALRHQFHYVLLDLPERAGRLVDEALAACASVYVVADRSVHAAREAARLLHHAQARDGDAHVSL ILNNAQQPVRGRVEPADFARAVGRASMLELPYEPQTLAVAENLGAALDAPRGDGFAAGIGALAQGLTGADAAPAARRPWY ARLAGGRGAR
Specific function: Unknown
COG id: COG4963
COG function: function code U; Flp pilus assembly protein, ATPase CpaE
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43036; Mature: 42904
Theoretical pI: Translated: 7.40; Mature: 7.40
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGAFDRVGGARPVKELRDAAGGARLVAIVADAASDEVIRNLIADQAMTGAQVARGGIDDA CCCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHH IALMRDLSHGPQHLLVDVSGAAMPLSDLARLADVCDPSVNVIVIGERNDVGLFRSMLRIG HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHH VRDYLVKPLTVELVHRALSAADPNAAARAGKAIGFVGARGGVGVTSIAVALARHLADRTR HHHHHHCCHHHHHHHHHHHCCCCCHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH RRVAYVDFDCHGGAACSMLGVVSNQGLVELLQNPQRLDAQLIHQAMVAQSDRLFVLSAEL CEEEEEEECCCCCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEECC PYDSEAPWRAGAVAGLVGALRHQFHYVLLDLPERAGRLVDEALAACASVYVVADRSVHAA CCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHEEECCHHHHH REAARLLHHAQARDGDAHVSLILNNAQQPVRGRVEPADFARAVGRASMLELPYEPQTLAV HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCHHHEECCCCCCHHHH AENLGAALDAPRGDGFAAGIGALAQGLTGADAAPAARRPWYARLAGGRGAR HHHCCHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCC >Mature Secondary Structure GAFDRVGGARPVKELRDAAGGARLVAIVADAASDEVIRNLIADQAMTGAQVARGGIDDA CCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHH IALMRDLSHGPQHLLVDVSGAAMPLSDLARLADVCDPSVNVIVIGERNDVGLFRSMLRIG HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHH VRDYLVKPLTVELVHRALSAADPNAAARAGKAIGFVGARGGVGVTSIAVALARHLADRTR HHHHHHCCHHHHHHHHHHHCCCCCHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH RRVAYVDFDCHGGAACSMLGVVSNQGLVELLQNPQRLDAQLIHQAMVAQSDRLFVLSAEL CEEEEEEECCCCCHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEECC PYDSEAPWRAGAVAGLVGALRHQFHYVLLDLPERAGRLVDEALAACASVYVVADRSVHAA CCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHEEECCHHHHH REAARLLHHAQARDGDAHVSLILNNAQQPVRGRVEPADFARAVGRASMLELPYEPQTLAV HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCHHHEECCCCCCHHHH AENLGAALDAPRGDGFAAGIGALAQGLTGADAAPAARRPWYARLAGGRGAR HHHCCHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA