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The map label for this gene is hfq [H]

Identifier: 237812077

GI number: 237812077

Start: 1770886

End: 1771530

Strand: Reverse

Name: hfq [H]

Synonym: GBP346_A1819

Alternate gene names: 237812077

Gene position: 1771530-1770886 (Counterclockwise)

Preceding gene: 237812080

Following gene: 237812060

Centisome position: 43.22

GC content: 70.85

Gene sequence:

>645_bases
ATGGCCAATCCTGCAGAATCCCATCCGCAAAACGACTTCATCAATGCCGCGCGCAAGGAACGCAAGCGCGTCGAAATTTA
TCTCGTCAACGGTATTCGACTGACGGGTTGCATCGAGTCGTTCGACCAGTATCTGGTGATGCTGCGCACGCCCGTCGGCC
TGCAAGGCATCTATAAACGCGCCATCTCGACGATCCAGCTCGACACGGGCGGCTCCCGTCCGGGCGGACGCGGCCCGCGC
GCGGGCGGCGCCCACGGCGGCGGCGGACGCCCCGGCGGACGCGAAGGCGGCGGTCATGGCCCGTACGGCTCGCACGGCGG
CTCGCGCGAACCCCGCGGCGACGGCGGCGGCTATGGCGCTCGCGAATCGCGCGGTGACGGCGGTTATGGCTCCCGCGAAT
CGCGCGGCGACGGCGGCTACGGTTCCCGCGAACCGCGCGGCGACGGCGGTTACGGCTCCCGCGAACCGCGTGGCGACGGC
GGCTATGGCGCGCGCGAGCCGCGTGAACCGCGCGAGCCCCGCGAGTCTTACGGCGCGCCGCAAGAAGGCGCATCGACGCC
GTCCGGCACGCAGGAACGCAACGGCAACGGCCCGGTGATCGTCACGCGCCGTCGCCGTTCGCTCGGCCCGACCGACGGCC
AATAA

Upstream 100 bases:

>100_bases
CATCGGGTTCGAACAGGGTAAAATCCCGCCAAACGCTGTGTAAGTTCGCATGCGGCGAAACGCATAACTCTTAATTGACG
CCGGCACCTGCCGCTTTTTA

Downstream 100 bases:

>100_bases
AGGCAGGCCGCCAAATCGAAAGGGCAAGCCGCGACCGGCTTGCCCTTTTTTCTTGCCTGAGCGCGCAGCGCAGCGCCATC
GCGAATCCCGGAGCCGCGCA

Product: hfq protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MANPAESHPQNDFINAARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKRAISTIQLDTGGSRPGGRGPR
AGGAHGGGGRPGGREGGGHGPYGSHGGSREPRGDGGGYGARESRGDGGYGSRESRGDGGYGSREPRGDGGYGSREPRGDG
GYGAREPREPREPRESYGAPQEGASTPSGTQERNGNGPVIVTRRRRSLGPTDGQ

Sequences:

>Translated_214_residues
MANPAESHPQNDFINAARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKRAISTIQLDTGGSRPGGRGPR
AGGAHGGGGRPGGREGGGHGPYGSHGGSREPRGDGGGYGARESRGDGGYGSRESRGDGGYGSREPRGDGGYGSREPRGDG
GYGAREPREPREPRESYGAPQEGASTPSGTQERNGNGPVIVTRRRRSLGPTDGQ
>Mature_213_residues
ANPAESHPQNDFINAARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKRAISTIQLDTGGSRPGGRGPRA
GGAHGGGGRPGGREGGGHGPYGSHGGSREPRGDGGGYGARESRGDGGYGSRESRGDGGYGSREPRGDGGYGSREPRGDGG
YGAREPREPREPRESYGAPQEGASTPSGTQERNGNGPVIVTRRRRSLGPTDGQ

Specific function: RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs [H]

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hfq family [H]

Homologues:

Organism=Escherichia coli, GI1790614, Length=56, Percent_Identity=57.1428571428571, Blast_Score=73, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005001
- InterPro:   IPR010920
- InterPro:   IPR001163 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 22419; Mature: 22287

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANPAESHPQNDFINAARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKR
CCCCCCCCCCHHHHHHHHHHCCEEEEEEECCEEHHHHHHHHHHHHHHHHCCCCHHHHHHH
AISTIQLDTGGSRPGGRGPRAGGAHGGGGRPGGREGGGHGPYGSHGGSREPRGDGGGYGA
HHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RESRGDGGYGSRESRGDGGYGSREPRGDGGYGSREPRGDGGYGAREPREPREPRESYGAP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC
QEGASTPSGTQERNGNGPVIVTRRRRSLGPTDGQ
CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
>Mature Secondary Structure 
ANPAESHPQNDFINAARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKR
CCCCCCCCCHHHHHHHHHHCCEEEEEEECCEEHHHHHHHHHHHHHHHHCCCCHHHHHHH
AISTIQLDTGGSRPGGRGPRAGGAHGGGGRPGGREGGGHGPYGSHGGSREPRGDGGGYGA
HHHEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RESRGDGGYGSRESRGDGGYGSREPRGDGGYGSREPRGDGGYGAREPREPREPRESYGAP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC
QEGASTPSGTQERNGNGPVIVTRRRRSLGPTDGQ
CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA