| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is mdtP [H]
Identifier: 237812047
GI number: 237812047
Start: 1738558
End: 1740054
Strand: Reverse
Name: mdtP [H]
Synonym: GBP346_A1789
Alternate gene names: 237812047
Gene position: 1740054-1738558 (Counterclockwise)
Preceding gene: 237812048
Following gene: 237812046
Centisome position: 42.46
GC content: 70.07
Gene sequence:
>1497_bases ATGAAAACCTTCCCGTTGTCCGCTTGCCGGACCGCCGTGGCCGTCGCGGTCGCCGCGCTCGCGCTCGCGGGATGCGCGAA CTATTTCGGCCTCAAGAGCGACAAGGCGATCGCTCCCGCGGCGCAGTTCGAAAGCGCGCGGAGCCTGCCCGCGCAGGGCG GCCAATGGCCGTCGCTCGACTGGGCGAACCAGTTCGGCGATCCGCAATTGCCGAAGCTGATCGACGAGGCGCTCGAAGGC AATCCGACGATCGCGCAGGCGCAGGCGCGCATCGCGAAGGCGTCGTCGTACATCGAGTCGTCGCGCTCGACGCTGCTGCC GAAGGCCGACGCGAAGTACTCGTGGACCCGCGAGCTGTACTCGGGCAACGCCCTTTTCCCGCCCCCGTACGGCGGCCAGT GGTACAGCGAGAACAACGCGCTCGCGAGCGCGTCGTGGGAGCTCGATCTGTGGGGCAAGAACCGCGCGCGCCTGAATGCG GCCGTGTCGCAGGAAAAGGCCGCCGAAGCCGACCTGCAGCAGGCGCGCGTGACGCTCGCGACGTCGGTCGCGCGCACGTA CAACCAGCTCGCGCAACTGTACGCGCTGCGCGACATCGCCGGGCGCGAGATCTCGAACCGGCAGACGGTCGGCAAGATCA CCGACGGCCGCGTCGGCGCGGGCCTCGACACGAACGTCGAGCGCCAGACCGCGCGCGGCAACATCGCGACGAGCCAGTCG ACGCTGTCCGATCTCGACGGCCAGATCACGAACGTCCGCTATCAGCTCGCCGCGCTGCTCGGCAAAGGTCCGGACCGCGG GCTGCAGATCGCCGCGCCCGTGCTGAGCGCGGGCGGCGCGGTCGCGCTGCCGGAGAACCTGCCCGCCGATCTCGTGTCGC GCCGCCCGGATCTCGTCGCCGCGCGCTGGCAGGTCGAAGCGGCGATGCACGACGTGAAGGAAGCGAAAGCCGAGTTCTTT CCGGACATCAACCTCGCGGCGGGCTTCGGCTTCGACGCGTTCGGCTGGGGCCGATTCCTGAACTTCGCGAGCCGCCAGGC GCAGTTCGGCCCCGCGATCCACCTGCCGATCTTCGACGGCGGCGCGCTGCGCGCGCAATTGAAGGGCCGCTACGCGGACT TCGATCTGTCGGTCGCGAACTACAACCAGACGCTCATCAACGCGCTGAACGACGTCGCGACGCAAGTCGCGTCGATTCGC TCGGTCGACACGCAAATGGGCGACGCGCAGCGCGCGCTCGATGCGTCGACGCGCGCCTACGAGCTCGCGGTGATCCGCTA CAAGGCGGGCCTGTCGCCGCAGTTGCAGGTGCTCAACGCGGACAGCAACCGGCTCGCCGCCGAGCAGACGGTGACGAACC TGAAGATGCGCCGCCGCGACCTGCAGATCGGCCTCGTGAAGGCGCTCGGCGGCGGCTTCGACGCGGCCGGCACACGGCTC GCCGCGCCCGCTCCCGCCTCGGCGCCGGCCGCGCCCGCGCAGCACGCATCGAACTGA
Upstream 100 bases:
>100_bases AATATTGCCATAACAAGCAATTTAGATAGATAAATGTAAGGAAATCCTTGCAGTGTCCATTATTCACTCCGAATCAGATG CCGAGCCAGGAAACCCACCG
Downstream 100 bases:
>100_bases ACCGAATCATTTCCGGCATGCCGGACCCTCGCTTCAATCGCTTAGATACAAGACGGAGAAACTCGCCATGAGCGACCCTC AACAAAACGCAGCGCCCGCG
Product: efflux transporter, outer membrane factor lipoprotein, NodT family
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 498; Mature: 498
Protein sequence:
>498_residues MKTFPLSACRTAVAVAVAALALAGCANYFGLKSDKAIAPAAQFESARSLPAQGGQWPSLDWANQFGDPQLPKLIDEALEG NPTIAQAQARIAKASSYIESSRSTLLPKADAKYSWTRELYSGNALFPPPYGGQWYSENNALASASWELDLWGKNRARLNA AVSQEKAAEADLQQARVTLATSVARTYNQLAQLYALRDIAGREISNRQTVGKITDGRVGAGLDTNVERQTARGNIATSQS TLSDLDGQITNVRYQLAALLGKGPDRGLQIAAPVLSAGGAVALPENLPADLVSRRPDLVAARWQVEAAMHDVKEAKAEFF PDINLAAGFGFDAFGWGRFLNFASRQAQFGPAIHLPIFDGGALRAQLKGRYADFDLSVANYNQTLINALNDVATQVASIR SVDTQMGDAQRALDASTRAYELAVIRYKAGLSPQLQVLNADSNRLAAEQTVTNLKMRRRDLQIGLVKALGGGFDAAGTRL AAPAPASAPAAPAQHASN
Sequences:
>Translated_498_residues MKTFPLSACRTAVAVAVAALALAGCANYFGLKSDKAIAPAAQFESARSLPAQGGQWPSLDWANQFGDPQLPKLIDEALEG NPTIAQAQARIAKASSYIESSRSTLLPKADAKYSWTRELYSGNALFPPPYGGQWYSENNALASASWELDLWGKNRARLNA AVSQEKAAEADLQQARVTLATSVARTYNQLAQLYALRDIAGREISNRQTVGKITDGRVGAGLDTNVERQTARGNIATSQS TLSDLDGQITNVRYQLAALLGKGPDRGLQIAAPVLSAGGAVALPENLPADLVSRRPDLVAARWQVEAAMHDVKEAKAEFF PDINLAAGFGFDAFGWGRFLNFASRQAQFGPAIHLPIFDGGALRAQLKGRYADFDLSVANYNQTLINALNDVATQVASIR SVDTQMGDAQRALDASTRAYELAVIRYKAGLSPQLQVLNADSNRLAAEQTVTNLKMRRRDLQIGLVKALGGGFDAAGTRL AAPAPASAPAAPAQHASN >Mature_498_residues MKTFPLSACRTAVAVAVAALALAGCANYFGLKSDKAIAPAAQFESARSLPAQGGQWPSLDWANQFGDPQLPKLIDEALEG NPTIAQAQARIAKASSYIESSRSTLLPKADAKYSWTRELYSGNALFPPPYGGQWYSENNALASASWELDLWGKNRARLNA AVSQEKAAEADLQQARVTLATSVARTYNQLAQLYALRDIAGREISNRQTVGKITDGRVGAGLDTNVERQTARGNIATSQS TLSDLDGQITNVRYQLAALLGKGPDRGLQIAAPVLSAGGAVALPENLPADLVSRRPDLVAARWQVEAAMHDVKEAKAEFF PDINLAAGFGFDAFGWGRFLNFASRQAQFGPAIHLPIFDGGALRAQLKGRYADFDLSVANYNQTLINALNDVATQVASIR SVDTQMGDAQRALDASTRAYELAVIRYKAGLSPQLQVLNADSNRLAAEQTVTNLKMRRRDLQIGLVKALGGGFDAAGTRL AAPAPASAPAAPAQHASN
Specific function: Could be involved in resistance to puromycin, acriflavine and tetraphenylarsonium chloride [H]
COG id: COG1538
COG function: function code MU; Outer membrane protein
Gene ontology:
Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]
Homologues:
Organism=Escherichia coli, GI2367348, Length=429, Percent_Identity=32.1678321678322, Blast_Score=192, Evalue=6e-50, Organism=Escherichia coli, GI1786785, Length=465, Percent_Identity=27.3118279569892, Blast_Score=123, Evalue=3e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003423 - InterPro: IPR010131 [H]
Pfam domain/function: PF02321 OEP [H]
EC number: NA
Molecular weight: Translated: 53050; Mature: 53050
Theoretical pI: Translated: 9.32; Mature: 9.32
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTFPLSACRTAVAVAVAALALAGCANYFGLKSDKAIAPAAQFESARSLPAQGGQWPSLD CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC WANQFGDPQLPKLIDEALEGNPTIAQAQARIAKASSYIESSRSTLLPKADAKYSWTRELY HHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH SGNALFPPPYGGQWYSENNALASASWELDLWGKNRARLNAAVSQEKAAEADLQQARVTLA CCCCCCCCCCCCCCCCCCCCEEECEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH TSVARTYNQLAQLYALRDIAGREISNRQTVGKITDGRVGAGLDTNVERQTARGNIATSQS HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHH TLSDLDGQITNVRYQLAALLGKGPDRGLQIAAPVLSAGGAVALPENLPADLVSRRPDLVA HHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEHHHHCCCCCEECCCCCCHHHHHCCCCCEE ARWQVEAAMHDVKEAKAEFFPDINLAAGFGFDAFGWGRFLNFASRQAQFGPAIHLPIFDG HHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECC GALRAQLKGRYADFDLSVANYNQTLINALNDVATQVASIRSVDTQMGDAQRALDASTRAY CCEEHHHCCCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCEE ELAVIRYKAGLSPQLQVLNADSNRLAAEQTVTNLKMRRRDLQIGLVKALGGGFDAAGTRL EEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE AAPAPASAPAAPAQHASN CCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKTFPLSACRTAVAVAVAALALAGCANYFGLKSDKAIAPAAQFESARSLPAQGGQWPSLD CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC WANQFGDPQLPKLIDEALEGNPTIAQAQARIAKASSYIESSRSTLLPKADAKYSWTRELY HHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH SGNALFPPPYGGQWYSENNALASASWELDLWGKNRARLNAAVSQEKAAEADLQQARVTLA CCCCCCCCCCCCCCCCCCCCEEECEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH TSVARTYNQLAQLYALRDIAGREISNRQTVGKITDGRVGAGLDTNVERQTARGNIATSQS HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCHH TLSDLDGQITNVRYQLAALLGKGPDRGLQIAAPVLSAGGAVALPENLPADLVSRRPDLVA HHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEHHHHCCCCCEECCCCCCHHHHHCCCCCEE ARWQVEAAMHDVKEAKAEFFPDINLAAGFGFDAFGWGRFLNFASRQAQFGPAIHLPIFDG HHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECC GALRAQLKGRYADFDLSVANYNQTLINALNDVATQVASIRSVDTQMGDAQRALDASTRAY CCEEHHHCCCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCEE ELAVIRYKAGLSPQLQVLNADSNRLAAEQTVTNLKMRRRDLQIGLVKALGGGFDAAGTRL EEEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE AAPAPASAPAAPAQHASN CCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]