| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is 237812003
Identifier: 237812003
GI number: 237812003
Start: 1690438
End: 1691970
Strand: Reverse
Name: 237812003
Synonym: GBP346_A1743
Alternate gene names: NA
Gene position: 1691970-1690438 (Counterclockwise)
Preceding gene: 237812005
Following gene: 237812002
Centisome position: 41.28
GC content: 64.71
Gene sequence:
>1533_bases ATGATTAATGCGAAAACGGGCTTTCTATTTTTTATTTTCGTGATGAGCCTGATCGGATGCCGCCCGGCATTCGCCCAAAC CAATACGCCGGTCACCGGCATCGATCTGGGCGGCGAAATCATCGAGATCATCAAGCAGAATCCGCAAGATCCGACACAGG CGATCAACAATTACATGTCCGGCGTCGCCGCGACGAACGTGCGCTGGGTGCGCATTCATCTCGACTGGTCGGCCATCCAG CCGGCGTCGACGTGGATCTTCACGAGCGACCCCAATCCCGGCCGGAGCAGCGGCCTCACCTGGGGCGCGACGGACATCGT CGTGCGGGCGGCCCGGAATTACGGAATACGCATTCTCGGCGTGATCACGTCGACGCCGCGCTGGGCCACCCACGCGCAAT GTCCGAGCTACTACCGGCAATCGACCGACGACGCCTACAAGCTTTGCGCGCCGAATCTCACGTCGTACACGAACTTCGCG CGCGCCGCCGCCAAGCATTACGGCAACGACAGCTACGGCGGAAAGATCGACGCGTGGGAAATCTGGAACGAGCCGAACTG CGGCCCGAACTTCATTCCTCACGATCCGGTCCTTTATACGCGGCTCGTGAAGAGCGCATACCCGGCGATCAAGCAGGCCA ATCCGTCGGCGTCCGTCTATGCGGGCGGCAGCTCGGGGTGCCTCACGTCGCCGAACAACGGCACCGGCGCGCTGCCGTCG AGCGGCGTGGCCGGCCTCGTGAACTCGACGGACGCCCGCTACCCCGCGCCCACGCAGTGGGAGCCGCGCGACTGGCTGGC CGTGATGTACGCGAACGGCGCGCGCGGGTATTTCGACGGACTCGCGCACCATCCCCACTGCCACAGCGACGACTGGCAAC TGCCGGGCGACCAGTGCCCGAGCACGACCGTCAACTCCGTGTACCCGGATTACTCGAATCCGTTCAACATCATGTGGCAC ACGTTCGCCTCGCCTTCGTACGGTTGGCCCGCTCCGACCGGCAAGACGTTCGCCAGCTATACGGGAACGAGCCTGCGCGA GCTGATGAACGCGAACGGCGACGGGGGAAAGCCGATCGTGATCACCGAGTTCGGCGTCGCGACAACCGCGTCGGACGGCG CGACCGACTTCACCGGCCAGTTGGGCGGCAGTGCGCAGCAATACGCAAACGCCGATTTTCAGACGATCGCGCCGGCGTAC CTGACGCAGGCGAATCAGGAACGCGAGTACAAGGCGCTGATCGCCTGGATCGCCAATCAGCCCTACGGCCAGTACGGCCC GGTTTACGCGTACTGCTACTCGGACATGGCGCTGTCGTCGCCGTATAGCGCGAACATCTACGAGCCGTATTTCGGCCTGA TGACGATCACCGCGTCGACGGCCACCTCCGGCACGACGGGCGCGCCCAAGATCGCCGGCGCGTATCAGGCCGCATCGGGG CAGTATTACCCGGCCTGGCCCAACTTCGGCGCCGCCGCAACGGCGGCGGCCAATCACACGCCGGGCTATGCGCCGGTCGG CCCCGGCTGGTGA
Upstream 100 bases:
>100_bases CGAAAGACACGACGACGGGCCGCCGCGCGGCCGCCCGCATCGGCCGCGCCCCGAGTCTCGAACCGACCATTCCATTCAAT TCATCAGGCCGAGTTAATTC
Downstream 100 bases:
>100_bases CGCATCGGGCAAGGCGAACGAGAAAACCGGCGGCCGCCCACCGGCGCGCGGGCGCATCGCGTCAGGCGCGGTAGCCGCCG GGCGAGCGCTTTCGGCTCCG
Product: xylann 1,4-beta-xylosidase
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 510; Mature: 510
Protein sequence:
>510_residues MINAKTGFLFFIFVMSLIGCRPAFAQTNTPVTGIDLGGEIIEIIKQNPQDPTQAINNYMSGVAATNVRWVRIHLDWSAIQ PASTWIFTSDPNPGRSSGLTWGATDIVVRAARNYGIRILGVITSTPRWATHAQCPSYYRQSTDDAYKLCAPNLTSYTNFA RAAAKHYGNDSYGGKIDAWEIWNEPNCGPNFIPHDPVLYTRLVKSAYPAIKQANPSASVYAGGSSGCLTSPNNGTGALPS SGVAGLVNSTDARYPAPTQWEPRDWLAVMYANGARGYFDGLAHHPHCHSDDWQLPGDQCPSTTVNSVYPDYSNPFNIMWH TFASPSYGWPAPTGKTFASYTGTSLRELMNANGDGGKPIVITEFGVATTASDGATDFTGQLGGSAQQYANADFQTIAPAY LTQANQEREYKALIAWIANQPYGQYGPVYAYCYSDMALSSPYSANIYEPYFGLMTITASTATSGTTGAPKIAGAYQAASG QYYPAWPNFGAAATAAANHTPGYAPVGPGW
Sequences:
>Translated_510_residues MINAKTGFLFFIFVMSLIGCRPAFAQTNTPVTGIDLGGEIIEIIKQNPQDPTQAINNYMSGVAATNVRWVRIHLDWSAIQ PASTWIFTSDPNPGRSSGLTWGATDIVVRAARNYGIRILGVITSTPRWATHAQCPSYYRQSTDDAYKLCAPNLTSYTNFA RAAAKHYGNDSYGGKIDAWEIWNEPNCGPNFIPHDPVLYTRLVKSAYPAIKQANPSASVYAGGSSGCLTSPNNGTGALPS SGVAGLVNSTDARYPAPTQWEPRDWLAVMYANGARGYFDGLAHHPHCHSDDWQLPGDQCPSTTVNSVYPDYSNPFNIMWH TFASPSYGWPAPTGKTFASYTGTSLRELMNANGDGGKPIVITEFGVATTASDGATDFTGQLGGSAQQYANADFQTIAPAY LTQANQEREYKALIAWIANQPYGQYGPVYAYCYSDMALSSPYSANIYEPYFGLMTITASTATSGTTGAPKIAGAYQAASG QYYPAWPNFGAAATAAANHTPGYAPVGPGW >Mature_510_residues MINAKTGFLFFIFVMSLIGCRPAFAQTNTPVTGIDLGGEIIEIIKQNPQDPTQAINNYMSGVAATNVRWVRIHLDWSAIQ PASTWIFTSDPNPGRSSGLTWGATDIVVRAARNYGIRILGVITSTPRWATHAQCPSYYRQSTDDAYKLCAPNLTSYTNFA RAAAKHYGNDSYGGKIDAWEIWNEPNCGPNFIPHDPVLYTRLVKSAYPAIKQANPSASVYAGGSSGCLTSPNNGTGALPS SGVAGLVNSTDARYPAPTQWEPRDWLAVMYANGARGYFDGLAHHPHCHSDDWQLPGDQCPSTTVNSVYPDYSNPFNIMWH TFASPSYGWPAPTGKTFASYTGTSLRELMNANGDGGKPIVITEFGVATTASDGATDFTGQLGGSAQQYANADFQTIAPAY LTQANQEREYKALIAWIANQPYGQYGPVYAYCYSDMALSSPYSANIYEPYFGLMTITASTATSGTTGAPKIAGAYQAASG QYYPAWPNFGAAATAAANHTPGYAPVGPGW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54796; Mature: 54796
Theoretical pI: Translated: 6.50; Mature: 6.50
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MINAKTGFLFFIFVMSLIGCRPAFAQTNTPVTGIDLGGEIIEIIKQNPQDPTQAINNYMS CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCCHHHHHHHHHH GVAATNVRWVRIHLDWSAIQPASTWIFTSDPNPGRSSGLTWGATDIVVRAARNYGIRILG CHHHCCEEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEE VITSTPRWATHAQCPSYYRQSTDDAYKLCAPNLTSYTNFARAAAKHYGNDSYGGKIDAWE EEECCCCCCCCCCCHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEE IWNEPNCGPNFIPHDPVLYTRLVKSAYPAIKQANPSASVYAGGSSGCLTSPNNGTGALPS ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCC SGVAGLVNSTDARYPAPTQWEPRDWLAVMYANGARGYFDGLAHHPHCHSDDWQLPGDQCP CCCEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCC STTVNSVYPDYSNPFNIMWHTFASPSYGWPAPTGKTFASYTGTSLRELMNANGDGGKPIV CCCHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCHHHHHHHCCCCCCCCEEE ITEFGVATTASDGATDFTGQLGGSAQQYANADFQTIAPAYLTQANQEREYKALIAWIANQ EEECCCEECCCCCCCCCCCCCCCCHHHHCCCCHHHHCHHHHHHCCCHHHHHHHHHHHHCC PYGQYGPVYAYCYSDMALSSPYSANIYEPYFGLMTITASTATSGTTGAPKIAGAYQAASG CCCCCCCEEEEEECCHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHCCC QYYPAWPNFGAAATAAANHTPGYAPVGPGW CCCCCCCCCCCHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MINAKTGFLFFIFVMSLIGCRPAFAQTNTPVTGIDLGGEIIEIIKQNPQDPTQAINNYMS CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCCHHHHHHHHHH GVAATNVRWVRIHLDWSAIQPASTWIFTSDPNPGRSSGLTWGATDIVVRAARNYGIRILG CHHHCCEEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEE VITSTPRWATHAQCPSYYRQSTDDAYKLCAPNLTSYTNFARAAAKHYGNDSYGGKIDAWE EEECCCCCCCCCCCHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEE IWNEPNCGPNFIPHDPVLYTRLVKSAYPAIKQANPSASVYAGGSSGCLTSPNNGTGALPS ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCC SGVAGLVNSTDARYPAPTQWEPRDWLAVMYANGARGYFDGLAHHPHCHSDDWQLPGDQCP CCCEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCCCC STTVNSVYPDYSNPFNIMWHTFASPSYGWPAPTGKTFASYTGTSLRELMNANGDGGKPIV CCCHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCHHHHHHHCCCCCCCCEEE ITEFGVATTASDGATDFTGQLGGSAQQYANADFQTIAPAYLTQANQEREYKALIAWIANQ EEECCCEECCCCCCCCCCCCCCCCHHHHCCCCHHHHCHHHHHHCCCHHHHHHHHHHHHCC PYGQYGPVYAYCYSDMALSSPYSANIYEPYFGLMTITASTATSGTTGAPKIAGAYQAASG CCCCCCCEEEEEECCHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHCCC QYYPAWPNFGAAATAAANHTPGYAPVGPGW CCCCCCCCCCCHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA