| Definition | Burkholderia pseudomallei MSHR346 chromosome I, complete genome. |
|---|---|
| Accession | NC_012695 |
| Length | 4,098,576 |
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The map label for this gene is cht60 [H]
Identifier: 237811936
GI number: 237811936
Start: 1613278
End: 1615377
Strand: Direct
Name: cht60 [H]
Synonym: GBP346_A1677
Alternate gene names: 237811936
Gene position: 1613278-1615377 (Clockwise)
Preceding gene: 237811934
Following gene: 237811939
Centisome position: 39.36
GC content: 69.95
Gene sequence:
>2100_bases ATGAAACGACGTGAATGCCGCGGGAATGCGCGCGGCAAGGATTCGGTGAAGATGCGCAAGAAAAGCTTGGTTCATTTGCC CGTCGCGCTGGCGGTGGCCGCGGCGCTCGGCGCGTGCTCGGGCGACGACGACGCGACGCTCGAGTCGCGCGCGGACGCGA TCGTCGAACGCATGACGACCCGGCAGAAGGTCGGCCAGAAACTGATGATGGCGTTCCGGTACTGGTGCCCCGACGGGCAG CCCGCGTGCACGGCCGGCATGACCGAATTTCCCGACGCCGCGCGCGACGCGCTGCGCGAGAACGGCATTGGCGGCGTGAT CCTGTTCTCGAACAACCTGACGGGCATCAAGCAGACGCGCCGGCTGATCGACGGCATTCGGGCCGCGCCCGCGGCCGACA GCCCGCTCGGGCTGATGATCGGCATCGACGAGGAGGGCGGCAACGTGTTTCGCCTGCCGCGCGTCGAGGCGACCGCGTTC GCCGGCAACATGGCGCTCGGCGCGGCGTACGAAGCGACGCGGGACGACCGGCTCGCGTACGACATGGGCCGCGTGCTCGC CGCGGAGATCGCGGCGGTCGGCTTCAACGTGAATTTCGCGCCGGACGTCGACGTCAACAGCAATCCGCTCAATCCGGTGA TCAACGTGCGCGCGTTCGGCGACGATCCGGCGACGATCGGCCTGCTCGGCCGGCGCATGGTGCAGGGCATGAAGAGCGAG CGCGTGATCGGCACGTTCAAGCATTTTCCCGGGCACGGCGACACGGATACCGATTCGCACTACGGATTGCCCGTCGTGAT CAAGTCGCGCGCCGACGCCTACGCGATCGATCTCGCGCCGTACCGGCAGGCGATCGAAGCGGGCGAGGCGCCCGACATGA TCATGACCGCGCACATCCAGTATCCGTCGCTCGACGACACCCGCGTCGCGACCCGCACGGGCGAGCAGATGATCGCGCCC GCGACGATGTCGCGGCGCATCCAGCACGATATCCTGCGCGGCGAGTTCGGCTATCAGGGCGTGACGATCACCGACGCGCT CGACATGAAGGGCATCGCCGGCTTCTTCGACGAGGACGACGCGGTCGTCAAGGTGTTCCAGGCGGACGTCGACATTGCGC TGATGCCCGTCGAGTTTCGCACCGCGGCCGATGCCGGGCGCCTGGCGGCGCTCGTCGATCGCGTCGCCGCGGCGGTCGAT TCGGGGCGGATCGATCGCGCCGAGTTCGATCGCTCGGTGCGCCGTATCGTGCTGACGAAGCTGCGCCACGGCATCGTCGC GTCGGATCGCGGCCGGCCGGTCGACGAGCTGGCATCGATCGGCGGGCCCGCGCACCGCGCGATCGAGCGCGACATCGCGC AAAAATCGATCACCGTGCTGCGCAACGAGAACGGCGCGCTGCCGCTGCAGGCCGCGGGCCGGCGCATCTTCATCCTGACG CCGTGGGGCGAGCAGGCCGAGGCGATGCGGCGGCGTTTCGTCGAGCTTGGCCATCCGCTCGTCACGGGCGCGAAGCTGAG CGCGATCACGTGGGCCGAACAGCAGCAGGCGATCGATGCGGCCGACGTCGTGATCGTCGGCACGCTGTCGACGGGCGTGA CGCCCGTCGAGCACAACGGGGATCCGAACGCGCGCGTGAGCCCGCCGGCGCCGTCGGCCGTGCGGATGCGGCAGGCCGCG CCCGCGAACGGCGAGGAGGAGGGTTCGGTGATCTTCGACCACGTCGAGCGGGCGGACGCGGCGAAGGACATCGGCGCGCG CCCGAGCGTGCTCGCGGCGATCGCGGCGCCGAGCGAGGCGCAGCAGATGCGCGACGCGATGGACTACGCGAAGGCGCGGC GCAAGACCGTGATCCACGTGACGATGCGCGCGCCGTACGACGTGATCAGCTACGACGATGTCGCGGACGCGACGCTCGCC ACCTACGCGTACTACGGCTACGAAGGCGGCTTGCGCGGCCCGTCGCTGCCCGCGGCCGTCGACGCGATGCTCGGCGTCGC GCGGCCGGTCGGCAGGCTGCCGGTCGCGATCCACGCACTGAACGCGGACGGATCGACGGGGCCGCTGCGCTACGCGCGCG GATTCGGGTTGCAGTACTGA
Upstream 100 bases:
>100_bases CATTTGACGAATTCGATGAATGGGCATTCTGAGTGAATGAATACGCGTGAAGTTCCGGAGTACCGATGAACCGAAAGCCG ATAGGGATGCCGGATGACGA
Downstream 100 bases:
>100_bases GGCCGGACGCCGGCGACGCCGCGTCGCTGTCGGCGCGGCGTCGAGCGACACGCCGCGCGCGCAGGCGGGCTGCGGCGGCG CGGCCGATCGCCGCGCGTTA
Product: glycosyl hydrolase, family 3
Products: NA
Alternate protein names: Beta-N-acetylhexosaminidase; Chitobiase; N-acetyl-beta-glucosaminidase [H]
Number of amino acids: Translated: 699; Mature: 699
Protein sequence:
>699_residues MKRRECRGNARGKDSVKMRKKSLVHLPVALAVAAALGACSGDDDATLESRADAIVERMTTRQKVGQKLMMAFRYWCPDGQ PACTAGMTEFPDAARDALRENGIGGVILFSNNLTGIKQTRRLIDGIRAAPAADSPLGLMIGIDEEGGNVFRLPRVEATAF AGNMALGAAYEATRDDRLAYDMGRVLAAEIAAVGFNVNFAPDVDVNSNPLNPVINVRAFGDDPATIGLLGRRMVQGMKSE RVIGTFKHFPGHGDTDTDSHYGLPVVIKSRADAYAIDLAPYRQAIEAGEAPDMIMTAHIQYPSLDDTRVATRTGEQMIAP ATMSRRIQHDILRGEFGYQGVTITDALDMKGIAGFFDEDDAVVKVFQADVDIALMPVEFRTAADAGRLAALVDRVAAAVD SGRIDRAEFDRSVRRIVLTKLRHGIVASDRGRPVDELASIGGPAHRAIERDIAQKSITVLRNENGALPLQAAGRRIFILT PWGEQAEAMRRRFVELGHPLVTGAKLSAITWAEQQQAIDAADVVIVGTLSTGVTPVEHNGDPNARVSPPAPSAVRMRQAA PANGEEEGSVIFDHVERADAAKDIGARPSVLAAIAAPSEAQQMRDAMDYAKARRKTVIHVTMRAPYDVISYDDVADATLA TYAYYGYEGGLRGPSLPAAVDAMLGVARPVGRLPVAIHALNADGSTGPLRYARGFGLQY
Sequences:
>Translated_699_residues MKRRECRGNARGKDSVKMRKKSLVHLPVALAVAAALGACSGDDDATLESRADAIVERMTTRQKVGQKLMMAFRYWCPDGQ PACTAGMTEFPDAARDALRENGIGGVILFSNNLTGIKQTRRLIDGIRAAPAADSPLGLMIGIDEEGGNVFRLPRVEATAF AGNMALGAAYEATRDDRLAYDMGRVLAAEIAAVGFNVNFAPDVDVNSNPLNPVINVRAFGDDPATIGLLGRRMVQGMKSE RVIGTFKHFPGHGDTDTDSHYGLPVVIKSRADAYAIDLAPYRQAIEAGEAPDMIMTAHIQYPSLDDTRVATRTGEQMIAP ATMSRRIQHDILRGEFGYQGVTITDALDMKGIAGFFDEDDAVVKVFQADVDIALMPVEFRTAADAGRLAALVDRVAAAVD SGRIDRAEFDRSVRRIVLTKLRHGIVASDRGRPVDELASIGGPAHRAIERDIAQKSITVLRNENGALPLQAAGRRIFILT PWGEQAEAMRRRFVELGHPLVTGAKLSAITWAEQQQAIDAADVVIVGTLSTGVTPVEHNGDPNARVSPPAPSAVRMRQAA PANGEEEGSVIFDHVERADAAKDIGARPSVLAAIAAPSEAQQMRDAMDYAKARRKTVIHVTMRAPYDVISYDDVADATLA TYAYYGYEGGLRGPSLPAAVDAMLGVARPVGRLPVAIHALNADGSTGPLRYARGFGLQY >Mature_699_residues MKRRECRGNARGKDSVKMRKKSLVHLPVALAVAAALGACSGDDDATLESRADAIVERMTTRQKVGQKLMMAFRYWCPDGQ PACTAGMTEFPDAARDALRENGIGGVILFSNNLTGIKQTRRLIDGIRAAPAADSPLGLMIGIDEEGGNVFRLPRVEATAF AGNMALGAAYEATRDDRLAYDMGRVLAAEIAAVGFNVNFAPDVDVNSNPLNPVINVRAFGDDPATIGLLGRRMVQGMKSE RVIGTFKHFPGHGDTDTDSHYGLPVVIKSRADAYAIDLAPYRQAIEAGEAPDMIMTAHIQYPSLDDTRVATRTGEQMIAP ATMSRRIQHDILRGEFGYQGVTITDALDMKGIAGFFDEDDAVVKVFQADVDIALMPVEFRTAADAGRLAALVDRVAAAVD SGRIDRAEFDRSVRRIVLTKLRHGIVASDRGRPVDELASIGGPAHRAIERDIAQKSITVLRNENGALPLQAAGRRIFILT PWGEQAEAMRRRFVELGHPLVTGAKLSAITWAEQQQAIDAADVVIVGTLSTGVTPVEHNGDPNARVSPPAPSAVRMRQAA PANGEEEGSVIFDHVERADAAKDIGARPSVLAAIAAPSEAQQMRDAMDYAKARRKTVIHVTMRAPYDVISYDDVADATLA TYAYYGYEGGLRGPSLPAAVDAMLGVARPVGRLPVAIHALNADGSTGPLRYARGFGLQY
Specific function: Most active towards p-nitrophenyl-N-acetyl-beta-D- glucosaminide(PNP-beta-GlcNAc) and diacetylchitobiose [H]
COG id: COG1472
COG function: function code G; Beta-glucosidase-related glycosidases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 3 family [H]
Homologues:
Organism=Escherichia coli, GI1787350, Length=259, Percent_Identity=31.2741312741313, Blast_Score=109, Evalue=6e-25, Organism=Escherichia coli, GI1788453, Length=686, Percent_Identity=23.1778425655977, Blast_Score=91, Evalue=2e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019800 - InterPro: IPR001764 - InterPro: IPR017853 [H]
Pfam domain/function: PF00933 Glyco_hydro_3 [H]
EC number: =3.2.1.52 [H]
Molecular weight: Translated: 75039; Mature: 75039
Theoretical pI: Translated: 6.59; Mature: 6.59
Prosite motif: PS00775 GLYCOSYL_HYDROL_F3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRRECRGNARGKDSVKMRKKSLVHLPVALAVAAALGACSGDDDATLESRADAIVERMTT CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH RQKVGQKLMMAFRYWCPDGQPACTAGMTEFPDAARDALRENGIGGVILFSNNLTGIKQTR HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHH RLIDGIRAAPAADSPLGLMIGIDEEGGNVFRLPRVEATAFAGNMALGAAYEATRDDRLAY HHHHHHHCCCCCCCCCEEEEEEECCCCCEEEECCCCHHHCCCCCCCCCHHHCCCCCHHHH DMGRVLAAEIAAVGFNVNFAPDVDVNSNPLNPVINVRAFGDDPATIGLLGRRMVQGMKSE HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCC RVIGTFKHFPGHGDTDTDSHYGLPVVIKSRADAYAIDLAPYRQAIEAGEAPDMIMTAHIQ CEEEHHHCCCCCCCCCCCCCCCCCEEEECCCCEEEEECHHHHHHHHCCCCCCEEEEEEEE YPSLDDTRVATRTGEQMIAPATMSRRIQHDILRGEFGYQGVTITDALDMKGIAGFFDEDD CCCCCCCHHHHHCCCHHCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCC AVVKVFQADVDIALMPVEFRTAADAGRLAALVDRVAAAVDSGRIDRAEFDRSVRRIVLTK CEEEEEECCCCEEEEEEEHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH LRHGIVASDRGRPVDELASIGGPAHRAIERDIAQKSITVLRNENGALPLQAAGRRIFILT HHHCCEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHEEEEECCCCCCCHHHCCCEEEEEC PWGEQAEAMRRRFVELGHPLVTGAKLSAITWAEQQQAIDAADVVIVGTLSTGVTPVEHNG CCCHHHHHHHHHHHHHCCCEECCCEEEEEEHHHHHHCCCCCCEEEEEECCCCCCEECCCC DPNARVSPPAPSAVRMRQAAPANGEEEGSVIFDHVERADAAKDIGARPSVLAAIAAPSEA CCCCEECCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHH QQMRDAMDYAKARRKTVIHVTMRAPYDVISYDDVADATLATYAYYGYEGGLRGPSLPAAV HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHEEECCCCCCCCCCCHHHH DAMLGVARPVGRLPVAIHALNADGSTGPLRYARGFGLQY HHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCC >Mature Secondary Structure MKRRECRGNARGKDSVKMRKKSLVHLPVALAVAAALGACSGDDDATLESRADAIVERMTT CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH RQKVGQKLMMAFRYWCPDGQPACTAGMTEFPDAARDALRENGIGGVILFSNNLTGIKQTR HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHH RLIDGIRAAPAADSPLGLMIGIDEEGGNVFRLPRVEATAFAGNMALGAAYEATRDDRLAY HHHHHHHCCCCCCCCCEEEEEEECCCCCEEEECCCCHHHCCCCCCCCCHHHCCCCCHHHH DMGRVLAAEIAAVGFNVNFAPDVDVNSNPLNPVINVRAFGDDPATIGLLGRRMVQGMKSE HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCC RVIGTFKHFPGHGDTDTDSHYGLPVVIKSRADAYAIDLAPYRQAIEAGEAPDMIMTAHIQ CEEEHHHCCCCCCCCCCCCCCCCCEEEECCCCEEEEECHHHHHHHHCCCCCCEEEEEEEE YPSLDDTRVATRTGEQMIAPATMSRRIQHDILRGEFGYQGVTITDALDMKGIAGFFDEDD CCCCCCCHHHHHCCCHHCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCC AVVKVFQADVDIALMPVEFRTAADAGRLAALVDRVAAAVDSGRIDRAEFDRSVRRIVLTK CEEEEEECCCCEEEEEEEHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH LRHGIVASDRGRPVDELASIGGPAHRAIERDIAQKSITVLRNENGALPLQAAGRRIFILT HHHCCEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHEEEEECCCCCCCHHHCCCEEEEEC PWGEQAEAMRRRFVELGHPLVTGAKLSAITWAEQQQAIDAADVVIVGTLSTGVTPVEHNG CCCHHHHHHHHHHHHHCCCEECCCEEEEEEHHHHHHCCCCCCEEEEEECCCCCCEECCCC DPNARVSPPAPSAVRMRQAAPANGEEEGSVIFDHVERADAAKDIGARPSVLAAIAAPSEA CCCCEECCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHH QQMRDAMDYAKARRKTVIHVTMRAPYDVISYDDVADATLATYAYYGYEGGLRGPSLPAAV HHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHEEECCCCCCCCCCCHHHH DAMLGVARPVGRLPVAIHALNADGSTGPLRYARGFGLQY HHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8063094 [H]